Wall clock time and date at job start Sun Mar 29 2020 22:20:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.38963 * 120.55234 * 53.25526 * 3 2 1 5 5 C 1.39660 * 119.78213 * 179.97438 * 4 3 2 6 6 C 1.47360 * 119.52196 * 180.02562 * 5 4 3 7 7 N 1.31767 * 125.85239 * 359.97438 * 6 5 4 8 8 C 1.33455 * 109.25062 * 180.02562 * 7 6 5 9 9 C 1.35308 * 108.41411 * 0.02562 * 8 7 6 10 10 N 1.36647 * 107.05300 * 0.02562 * 9 8 7 11 11 H 0.96999 * 126.50691 * 179.97438 * 10 9 8 12 12 C 1.40246 * 120.95261 * 0.27747 * 5 4 3 13 13 C 1.35878 * 121.16162 * 359.42920 * 12 5 4 14 14 C 1.41109 * 120.13775 * 0.56557 * 13 12 5 15 15 C 1.40318 * 120.46742 * 179.74091 * 14 13 12 16 16 H 1.08006 * 119.99830 * 154.44098 * 15 14 13 17 17 C 1.40287 * 119.99795 * 334.44332 * 15 14 13 18 18 N 1.30640 * 120.00134 * 343.15882 * 17 15 14 19 19 Si 1.86794 * 119.99881 * 163.16277 * 17 15 14 20 20 H 1.48500 * 109.47571 * 89.99896 * 19 17 15 21 21 H 1.48499 * 109.47349 * 209.99920 * 19 17 15 22 22 H 1.48508 * 109.47322 * 329.99755 * 19 17 15 23 23 H 1.08001 * 120.10637 * 359.95755 * 4 3 2 24 24 H 1.07992 * 125.79672 * 179.97438 * 8 7 6 25 25 H 1.07996 * 126.46905 * 180.26399 * 9 8 7 26 26 H 1.07995 * 119.41505 * 179.72428 * 12 5 4 27 27 H 1.08003 * 119.92882 * 180.26337 * 13 12 5 28 28 H 0.96996 * 120.00317 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2747 -0.7150 -0.9589 5 6 4.6712 -0.7027 -0.9442 6 6 5.4148 -1.4631 -1.9641 7 7 4.8822 -2.1846 -2.9295 8 6 5.8568 -2.7296 -3.6604 9 6 7.0460 -2.3431 -3.1434 10 7 6.7749 -1.5426 -2.0697 11 1 7.4246 -1.1119 -1.4923 12 6 5.3759 0.0187 0.0304 13 6 4.7241 0.7364 0.9824 14 6 3.3134 0.7572 1.0120 15 6 2.6332 1.4916 1.9952 16 1 1.6330 1.8521 1.8047 17 6 3.2522 1.7576 3.2257 18 7 4.2990 1.0676 3.5930 19 14 2.5796 3.0983 4.3390 20 1 1.5663 2.5180 5.2564 21 1 3.6887 3.6845 5.1337 22 1 1.9491 4.1585 3.5120 23 1 2.7457 -1.2790 -1.7129 24 1 5.7197 -3.3710 -4.5184 25 1 8.0244 -2.6129 -3.5123 26 1 6.4558 0.0073 0.0212 27 1 5.2868 1.2881 1.7209 28 1 4.7268 1.2513 4.4440 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242015910.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:06 Heat of formation + Delta-G solvation = 76.821865 kcal Electronic energy + Delta-G solvation = -15277.011794 eV Core-core repulsion = 12678.483175 eV Total energy + Delta-G solvation = -2598.528619 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.56408 -39.42108 -37.00090 -35.95790 -33.37758 -32.55889 -31.61263 -29.78233 -27.20779 -24.15371 -23.58001 -22.25719 -21.17216 -19.84255 -19.31674 -17.80701 -17.24228 -15.93797 -15.81560 -15.71658 -15.15829 -14.57948 -14.55610 -14.51002 -14.28133 -13.77901 -13.52590 -13.44684 -13.12780 -12.85204 -12.63188 -12.29288 -11.75948 -11.60609 -11.26743 -10.89860 -10.81200 -10.00130 -9.55304 -8.96999 -8.67852 -6.54112 0.33486 0.60480 1.31826 1.38760 1.50839 1.65339 2.00843 2.12518 2.21739 2.41290 2.54807 2.74298 3.55949 3.65379 3.82841 4.34181 4.41156 4.46871 4.66037 4.75049 4.89535 5.01004 5.19128 5.33524 5.43359 5.67133 5.79288 5.90919 6.03500 6.11211 6.36144 6.56416 6.65028 6.76722 6.94057 7.37115 7.99395 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.031902 B = 0.006520 C = 0.005493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.470954 B = 4293.263009 C = 5096.420851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C 0.305 3.695 3 C -0.209 4.209 4 C 0.020 3.980 5 C -0.171 4.171 6 C 0.266 3.734 7 N -0.542 5.542 8 C -0.060 4.060 9 C -0.051 4.051 10 N -0.562 5.562 11 H 0.430 0.570 12 C -0.049 4.049 13 C -0.173 4.173 14 C 0.136 3.864 15 C -0.444 4.444 16 H 0.075 0.925 17 C 0.046 3.954 18 N -0.770 5.770 19 Si 0.979 3.021 20 H -0.266 1.266 21 H -0.249 1.249 22 H -0.261 1.261 23 H 0.111 0.889 24 H 0.184 0.816 25 H 0.218 0.782 26 H 0.127 0.873 27 H 0.128 0.872 28 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.343 -0.308 -2.601 11.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.206 5.206 2 C -0.004 4.004 3 C -0.215 4.215 4 C -0.003 4.003 5 C -0.175 4.175 6 C 0.007 3.993 7 N -0.262 5.262 8 C -0.209 4.209 9 C -0.185 4.185 10 N -0.166 5.166 11 H 0.271 0.729 12 C -0.069 4.069 13 C -0.192 4.192 14 C 0.131 3.869 15 C -0.470 4.470 16 H 0.093 0.907 17 C -0.177 4.177 18 N -0.392 5.392 19 Si 0.799 3.201 20 H -0.191 1.191 21 H -0.172 1.172 22 H -0.185 1.185 23 H 0.129 0.871 24 H 0.201 0.799 25 H 0.234 0.766 26 H 0.145 0.855 27 H 0.145 0.855 28 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 8.968 -0.523 -2.613 9.355 hybrid contribution 0.993 0.562 0.787 1.386 sum 9.961 0.038 -1.826 10.127 Atomic orbital electron populations 1.80993 1.13071 1.13856 1.12663 1.25908 0.92878 0.90881 0.90696 1.16883 0.83091 1.13768 1.07793 1.20567 0.93014 0.92849 0.93820 1.16850 0.91277 1.09645 0.99758 1.21371 0.80798 1.00067 0.97088 1.70341 1.34262 1.14135 1.07472 1.22798 0.88726 1.05954 1.03387 1.23369 1.02048 1.00642 0.92471 1.43387 1.07529 1.39634 1.26048 0.72916 1.20551 0.98955 0.94651 0.92780 1.20849 0.93035 1.04604 1.00693 1.18776 0.92643 0.86703 0.88827 1.19952 1.01836 1.26824 0.98413 0.90718 1.26808 0.94102 0.97433 0.99341 1.69673 1.16043 1.31792 1.21662 0.85211 0.79520 0.77772 0.77599 1.19053 1.17238 1.18462 0.87125 0.79870 0.76580 0.85538 0.85450 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.53 -26.34 18.54 19.00 0.35 -25.98 15 2 C 0.31 14.97 14.29 88.33 1.26 16.23 15 3 C -0.21 -9.90 5.93 -19.65 -0.12 -10.02 15 4 C 0.02 0.90 9.38 22.79 0.21 1.11 15 5 C -0.17 -6.87 5.88 -20.04 -0.12 -6.99 15 6 C 0.27 9.67 7.74 136.23 1.05 10.73 15 7 N -0.54 -20.66 10.81 -189.44 -2.05 -22.71 15 8 C -0.06 -1.75 11.85 83.77 0.99 -0.75 15 9 C -0.05 -1.16 12.04 83.27 1.00 -0.16 15 10 N -0.56 -14.87 6.06 -187.25 -1.14 -16.00 15 11 H 0.43 8.54 7.99 -92.71 -0.74 7.80 15 12 C -0.05 -1.84 9.55 22.21 0.21 -1.63 15 13 C -0.17 -7.40 8.62 22.43 0.19 -7.21 15 14 C 0.14 6.51 5.73 -19.86 -0.11 6.40 15 15 C -0.44 -21.29 8.54 23.27 0.20 -21.09 15 16 H 0.07 3.70 7.38 -2.91 -0.02 3.68 15 17 C 0.05 1.98 5.16 85.37 0.44 2.42 15 18 N -0.77 -32.78 10.96 21.88 0.24 -32.54 15 19 Si 0.98 32.96 29.59 68.60 2.03 34.99 15 20 H -0.27 -9.02 7.11 99.48 0.71 -8.31 15 21 H -0.25 -7.52 7.11 99.48 0.71 -6.81 15 22 H -0.26 -8.99 7.11 99.48 0.71 -8.28 15 23 H 0.11 4.87 7.79 -2.91 -0.02 4.84 15 24 H 0.18 4.19 8.06 -2.91 -0.02 4.16 15 25 H 0.22 2.68 8.06 -2.91 -0.02 2.66 15 26 H 0.13 3.68 7.06 -2.91 -0.02 3.66 15 27 H 0.13 5.42 6.20 -2.91 -0.02 5.40 15 28 H 0.31 11.35 8.29 -92.71 -0.77 10.58 15 Total: -1.00 -58.97 262.82 5.14 -53.82 By element: Atomic # 1 Polarization: 18.90 SS G_CDS: 0.48 Total: 19.38 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: 5.22 Total: -10.96 kcal Atomic # 7 Polarization: -94.64 SS G_CDS: -2.59 Total: -97.23 kcal Atomic # 14 Polarization: 32.96 SS G_CDS: 2.03 Total: 34.99 kcal Total: -58.97 5.14 -53.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242015910.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.647 kcal (2) G-P(sol) polarization free energy of solvation -58.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds