Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39613 * 120.43478 * 97.69294 * 3 2 1 5 5 C 1.37657 * 120.20700 * 179.71771 * 4 3 2 6 6 C 1.39997 * 121.15381 * 0.51932 * 5 4 3 7 7 C 1.47830 * 119.55924 * 179.75086 * 6 5 4 8 8 N 1.31484 * 125.83911 * 179.67982 * 7 6 5 9 9 C 1.33705 * 109.25297 * 180.02562 * 8 7 6 10 10 C 1.34957 * 108.38215 * 0.02562 * 9 8 7 11 11 N 1.36454 * 125.84041 * 359.73031 * 7 6 5 12 12 H 0.97004 * 126.49341 * 359.97438 * 11 7 6 13 13 C 1.38819 * 120.88207 * 359.47468 * 6 5 4 14 14 C 1.40564 * 119.71162 * 0.25703 * 13 6 5 15 15 C 1.40848 * 120.53882 * 180.02562 * 14 13 6 16 16 H 1.08010 * 119.99893 * 150.10850 * 15 14 13 17 17 C 1.40232 * 120.00552 * 330.11398 * 15 14 13 18 18 N 1.30662 * 120.00141 * 161.90965 * 17 15 14 19 19 Si 1.86806 * 119.99751 * 341.90528 * 17 15 14 20 20 H 1.48500 * 109.46556 * 95.39537 * 19 17 15 21 21 H 1.48501 * 109.47219 * 215.39471 * 19 17 15 22 22 H 1.48496 * 109.46821 * 335.39708 * 19 17 15 23 23 H 1.07997 * 119.89251 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.42493 * 180.24958 * 5 4 3 25 25 H 1.07997 * 125.80948 * 179.97438 * 9 8 7 26 26 H 1.07999 * 126.48221 * 180.26006 * 10 9 8 27 27 H 1.08005 * 120.14113 * 180.27775 * 13 6 5 28 28 H 0.97000 * 119.99798 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 0.1621 -1.1929 5 6 4.6517 0.1678 -1.1867 6 6 5.3713 0.0026 0.0027 7 6 6.8491 0.0089 -0.0321 8 7 7.6443 -0.1290 1.0059 9 6 8.9162 -0.0724 0.5976 10 6 8.9262 0.1075 -0.7399 11 7 7.6214 0.1600 -1.1469 12 1 7.3050 0.2817 -2.0558 13 6 4.7156 -0.1614 1.2153 14 6 3.3104 -0.1675 1.2522 15 6 2.6273 -0.3321 2.4729 16 1 1.6558 0.1186 2.6131 17 6 3.2084 -1.0810 3.5063 18 7 2.7722 -0.9526 4.7312 19 14 4.6062 -2.2623 3.1316 20 1 5.9051 -1.5871 3.3809 21 1 4.4930 -3.4566 4.0068 22 1 4.5315 -2.6821 1.7092 23 1 2.7404 0.2871 -2.1229 24 1 5.1859 0.2977 -2.1163 25 1 9.7873 -0.1555 1.2305 26 1 9.7993 0.1895 -1.3703 27 1 5.2827 -0.2834 2.1263 28 1 3.1739 -1.4709 5.4460 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242016286.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = 96.833813 kcal Electronic energy + Delta-G solvation = -15549.716085 eV Core-core repulsion = 12952.055249 eV Total energy + Delta-G solvation = -2597.660836 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.61905 -37.91417 -35.24501 -34.07725 -32.32033 -31.38471 -30.71864 -28.00970 -25.74481 -23.22233 -21.91860 -20.79606 -20.11700 -18.32737 -17.68822 -17.17104 -15.35882 -14.71150 -14.49266 -14.26375 -13.70875 -13.59202 -13.44897 -12.93715 -12.70976 -12.43276 -12.04122 -11.71218 -11.54080 -11.18044 -10.96437 -10.59538 -10.26221 -9.95747 -9.83181 -9.70917 -9.36607 -8.76741 -7.99843 -7.35783 -7.29527 -4.85424 1.38328 2.42765 2.48445 3.10549 3.11996 3.20655 3.30532 3.41233 3.80500 3.83506 4.13702 4.39413 4.77664 5.16241 5.18398 5.27886 5.54464 5.61887 5.77727 5.93710 6.22776 6.36747 6.49786 6.75550 6.85754 6.96670 7.15573 7.30879 7.40871 7.58638 7.68693 7.94715 8.20600 8.35768 8.39028 8.70207 9.67632 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.010151 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.229820 B = 2757.758135 C = 3950.095085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.497 5.497 2 C 0.296 3.704 3 C -0.168 4.168 4 C -0.010 4.010 5 C -0.251 4.251 6 C 0.036 3.964 7 C 0.264 3.736 8 N -0.481 5.481 9 C -0.028 4.028 10 C -0.065 4.065 11 N -0.566 5.566 12 H 0.419 0.581 13 C -0.180 4.180 14 C 0.121 3.879 15 C -0.405 4.405 16 H 0.100 0.900 17 C 0.084 3.916 18 N -0.769 5.769 19 Si 0.904 3.096 20 H -0.245 1.245 21 H -0.285 1.285 22 H -0.239 1.239 23 H 0.108 0.892 24 H 0.097 0.903 25 H 0.167 0.833 26 H 0.174 0.826 27 H 0.126 0.874 28 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.792 -0.069 -8.024 14.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.175 5.175 2 C -0.014 4.014 3 C -0.175 4.175 4 C -0.031 4.031 5 C -0.272 4.272 6 C 0.033 3.967 7 C 0.004 3.996 8 N -0.199 5.199 9 C -0.178 4.178 10 C -0.200 4.200 11 N -0.168 5.168 12 H 0.257 0.743 13 C -0.202 4.202 14 C 0.115 3.885 15 C -0.431 4.431 16 H 0.118 0.882 17 C -0.142 4.142 18 N -0.389 5.389 19 Si 0.727 3.273 20 H -0.170 1.170 21 H -0.212 1.212 22 H -0.162 1.162 23 H 0.126 0.874 24 H 0.115 0.885 25 H 0.184 0.816 26 H 0.191 0.809 27 H 0.144 0.856 28 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 9.791 -0.215 -6.866 11.960 hybrid contribution 1.324 -0.266 -1.208 1.812 sum 11.115 -0.481 -8.074 13.746 Atomic orbital electron populations 1.81044 1.12632 1.14224 1.09625 1.25646 0.92589 0.91536 0.91632 1.16869 0.83469 1.23292 0.93824 1.20367 0.93169 0.94334 0.95260 1.19864 0.93454 1.18612 0.95232 1.17336 0.84569 1.00101 0.94659 1.21905 0.93204 1.03337 0.81194 1.70487 1.01323 1.19546 1.28577 1.22339 0.95266 1.07477 0.92764 1.22708 0.86756 1.12849 0.97655 1.43472 1.06558 1.55954 1.10857 0.74300 1.21102 0.93412 1.09271 0.96384 1.18377 0.90469 0.88827 0.90860 1.19718 1.04938 1.24522 0.93925 0.88215 1.26417 0.97287 0.96834 0.93636 1.69587 1.36570 1.31836 1.00957 0.86385 0.80712 0.78892 0.81280 1.16958 1.21191 1.16220 0.87389 0.88530 0.81565 0.80904 0.85632 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -11.76 18.54 41.84 0.78 -10.99 15 2 C 0.30 6.73 14.35 -22.47 -0.32 6.41 15 3 C -0.17 -3.66 5.95 -104.11 -0.62 -4.28 15 4 C -0.01 -0.19 9.74 -39.28 -0.38 -0.57 15 5 C -0.25 -4.38 9.62 -39.13 -0.38 -4.75 15 6 C 0.04 0.72 5.86 -105.10 -0.62 0.10 15 7 C 0.26 4.81 7.75 -154.64 -1.20 3.61 15 8 N -0.48 -9.28 10.81 -11.22 -0.12 -9.40 15 9 C -0.03 -0.42 11.84 -17.90 -0.21 -0.64 15 10 C -0.07 -0.79 12.03 -16.51 -0.20 -0.99 15 11 N -0.57 -7.65 6.06 -10.55 -0.06 -7.72 15 12 H 0.42 4.27 8.00 -40.82 -0.33 3.95 15 13 C -0.18 -4.04 6.80 -38.49 -0.26 -4.30 15 14 C 0.12 2.83 5.26 -104.69 -0.55 2.28 15 15 C -0.41 -10.27 9.02 -37.85 -0.34 -10.62 15 16 H 0.10 2.72 7.65 -52.48 -0.40 2.32 15 17 C 0.08 2.05 5.41 -17.30 -0.09 1.95 15 18 N -0.77 -19.10 13.92 55.56 0.77 -18.33 15 19 Si 0.90 19.64 24.53 -169.99 -4.17 15.47 15 20 H -0.25 -5.33 6.72 56.52 0.38 -4.96 15 21 H -0.28 -5.95 7.11 56.52 0.40 -5.55 15 22 H -0.24 -5.31 6.86 56.52 0.39 -4.92 15 23 H 0.11 1.67 8.06 -52.49 -0.42 1.25 15 24 H 0.10 1.33 7.07 -52.49 -0.37 0.96 15 25 H 0.17 1.96 8.06 -52.49 -0.42 1.54 15 26 H 0.17 1.33 8.06 -52.49 -0.42 0.91 15 27 H 0.13 2.93 4.48 -52.48 -0.24 2.69 15 28 H 0.30 6.57 8.29 -40.82 -0.34 6.23 15 LS Contribution 257.85 15.07 3.89 3.89 Total: -1.00 -28.58 257.85 -5.87 -34.45 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -1.77 Total: 4.43 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -5.17 Total: -11.79 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 1.36 Total: -46.44 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -4.17 Total: 15.47 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -28.58 -5.87 -34.45 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242016286.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.283 kcal (2) G-P(sol) polarization free energy of solvation -28.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds