Wall clock time and date at job start Sun Mar 29 2020 22:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39613 * 120.43478 * 97.69294 * 3 2 1 5 5 C 1.37657 * 120.20700 * 179.71771 * 4 3 2 6 6 C 1.39997 * 121.15381 * 0.51932 * 5 4 3 7 7 C 1.47830 * 119.55924 * 179.75086 * 6 5 4 8 8 N 1.31484 * 125.83911 * 179.67982 * 7 6 5 9 9 C 1.33705 * 109.25297 * 180.02562 * 8 7 6 10 10 C 1.34957 * 108.38215 * 0.02562 * 9 8 7 11 11 N 1.36454 * 125.84041 * 359.73031 * 7 6 5 12 12 H 0.97004 * 126.49341 * 359.97438 * 11 7 6 13 13 C 1.38819 * 120.88207 * 359.47468 * 6 5 4 14 14 C 1.40564 * 119.71162 * 0.25703 * 13 6 5 15 15 C 1.40848 * 120.53882 * 180.02562 * 14 13 6 16 16 H 1.08010 * 119.99893 * 150.10850 * 15 14 13 17 17 C 1.40232 * 120.00552 * 330.11398 * 15 14 13 18 18 N 1.30662 * 120.00141 * 161.90965 * 17 15 14 19 19 Si 1.86806 * 119.99751 * 341.90528 * 17 15 14 20 20 H 1.48500 * 109.46556 * 95.39537 * 19 17 15 21 21 H 1.48501 * 109.47219 * 215.39471 * 19 17 15 22 22 H 1.48496 * 109.46821 * 335.39708 * 19 17 15 23 23 H 1.07997 * 119.89251 * 359.97438 * 4 3 2 24 24 H 1.08000 * 119.42493 * 180.24958 * 5 4 3 25 25 H 1.07997 * 125.80948 * 179.97438 * 9 8 7 26 26 H 1.07999 * 126.48221 * 180.26006 * 10 9 8 27 27 H 1.08005 * 120.14113 * 180.27775 * 13 6 5 28 28 H 0.97000 * 119.99798 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2751 0.1621 -1.1929 5 6 4.6517 0.1678 -1.1867 6 6 5.3713 0.0026 0.0027 7 6 6.8491 0.0089 -0.0321 8 7 7.6443 -0.1290 1.0059 9 6 8.9162 -0.0724 0.5976 10 6 8.9262 0.1075 -0.7399 11 7 7.6214 0.1600 -1.1469 12 1 7.3050 0.2817 -2.0558 13 6 4.7156 -0.1614 1.2153 14 6 3.3104 -0.1675 1.2522 15 6 2.6273 -0.3321 2.4729 16 1 1.6558 0.1186 2.6131 17 6 3.2084 -1.0810 3.5063 18 7 2.7722 -0.9526 4.7312 19 14 4.6062 -2.2623 3.1316 20 1 5.9051 -1.5871 3.3809 21 1 4.4930 -3.4566 4.0068 22 1 4.5315 -2.6821 1.7092 23 1 2.7404 0.2871 -2.1229 24 1 5.1859 0.2977 -2.1163 25 1 9.7873 -0.1555 1.2305 26 1 9.7993 0.1895 -1.3703 27 1 5.2827 -0.2834 2.1263 28 1 3.1739 -1.4709 5.4460 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242016286.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:04 Heat of formation + Delta-G solvation = 78.610918 kcal Electronic energy + Delta-G solvation = -15550.506289 eV Core-core repulsion = 12952.055249 eV Total energy + Delta-G solvation = -2598.451040 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 239.075 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.78404 -39.56408 -37.06167 -35.81823 -33.54545 -32.92261 -32.34625 -29.30131 -27.46882 -24.74344 -23.38256 -22.17423 -21.37328 -19.79031 -19.34872 -18.68545 -17.03968 -16.09988 -15.89818 -15.71725 -15.39559 -14.86317 -14.64147 -14.56425 -14.43573 -13.98955 -13.76402 -13.44301 -13.27041 -12.87782 -12.66974 -12.23761 -11.97018 -11.68118 -11.10030 -11.03627 -10.93483 -10.15187 -9.67293 -9.10118 -8.72019 -6.69953 -0.17186 0.78976 1.21665 1.32450 1.40311 1.48735 1.98229 2.03130 2.07805 2.23881 2.54686 2.61360 3.46102 3.47469 3.58257 4.18108 4.26445 4.44812 4.57907 4.63290 4.73698 4.90966 5.05732 5.15809 5.26571 5.54795 5.66477 5.73621 5.91591 5.99322 6.11458 6.44462 6.56236 6.59702 6.89156 7.21495 7.95760 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.010151 C = 0.007087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.229820 B = 2757.758135 C = 3950.095085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C 0.303 3.697 3 C -0.180 4.180 4 C -0.003 4.003 5 C -0.219 4.219 6 C 0.045 3.955 7 C 0.219 3.781 8 N -0.522 5.522 9 C -0.065 4.065 10 C -0.018 4.018 11 N -0.546 5.546 12 H 0.437 0.563 13 C -0.210 4.210 14 C 0.118 3.882 15 C -0.454 4.454 16 H 0.060 0.940 17 C 0.058 3.942 18 N -0.816 5.816 19 Si 0.956 3.044 20 H -0.251 1.251 21 H -0.273 1.273 22 H -0.247 1.247 23 H 0.149 0.851 24 H 0.150 0.850 25 H 0.187 0.813 26 H 0.229 0.771 27 H 0.109 0.891 28 H 0.303 0.697 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.099 0.013 -12.104 19.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.199 5.199 2 C -0.007 4.007 3 C -0.186 4.186 4 C -0.023 4.023 5 C -0.240 4.240 6 C 0.042 3.958 7 C -0.041 4.041 8 N -0.242 5.242 9 C -0.214 4.214 10 C -0.154 4.154 11 N -0.150 5.150 12 H 0.279 0.721 13 C -0.232 4.232 14 C 0.113 3.887 15 C -0.482 4.482 16 H 0.079 0.921 17 C -0.163 4.163 18 N -0.439 5.439 19 Si 0.778 3.222 20 H -0.176 1.176 21 H -0.199 1.199 22 H -0.170 1.170 23 H 0.167 0.833 24 H 0.168 0.832 25 H 0.204 0.796 26 H 0.245 0.755 27 H 0.127 0.873 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 13.071 -0.128 -10.973 17.067 hybrid contribution 0.554 -0.171 -0.287 0.647 sum 13.626 -0.299 -11.260 17.678 Atomic orbital electron populations 1.81027 1.13346 1.15098 1.10437 1.25917 0.92910 0.90930 0.90916 1.17192 0.83038 1.23649 0.94760 1.20832 0.93739 0.92403 0.95320 1.20472 0.93192 1.13978 0.96315 1.17637 0.86335 0.97468 0.94353 1.21430 0.92507 1.07375 0.82786 1.70373 1.03590 1.19731 1.30512 1.22900 0.94461 1.09197 0.94845 1.23540 0.87314 1.07400 0.97116 1.43415 1.06577 1.54270 1.10738 0.72079 1.20974 0.92733 1.12070 0.97374 1.18478 0.91257 0.88220 0.90792 1.19543 1.04332 1.28112 0.96183 0.92141 1.26909 0.98640 0.97383 0.93323 1.69607 1.38759 1.33882 1.01632 0.85608 0.78364 0.77677 0.80544 1.17581 1.19935 1.17050 0.83312 0.83245 0.79553 0.75453 0.87309 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -25.02 18.54 19.00 0.35 -24.67 15 2 C 0.30 13.90 14.35 88.33 1.27 15.17 15 3 C -0.18 -7.72 5.95 -19.53 -0.12 -7.84 15 4 C 0.00 -0.08 9.74 22.46 0.22 0.13 15 5 C -0.22 -6.58 9.62 22.56 0.22 -6.36 15 6 C 0.04 1.67 5.86 -20.17 -0.12 1.55 15 7 C 0.22 7.27 7.75 136.51 1.06 8.33 15 8 N -0.52 -19.19 10.81 -189.40 -2.05 -21.24 15 9 C -0.06 -1.70 11.84 83.65 0.99 -0.71 15 10 C -0.02 -0.32 12.03 83.17 1.00 0.68 15 11 N -0.55 -11.67 6.06 -187.29 -1.14 -12.80 15 12 H 0.44 5.85 8.00 -92.71 -0.74 5.11 15 13 C -0.21 -9.50 6.80 22.98 0.16 -9.34 15 14 C 0.12 5.71 5.26 -19.91 -0.10 5.60 15 15 C -0.45 -24.77 9.02 23.39 0.21 -24.56 15 16 H 0.06 3.64 7.65 -2.91 -0.02 3.62 15 17 C 0.06 3.02 5.41 85.35 0.46 3.48 15 18 N -0.82 -43.54 13.92 21.87 0.30 -43.23 15 19 Si 0.96 42.59 24.53 68.60 1.68 44.27 15 20 H -0.25 -11.22 6.72 99.48 0.67 -10.55 15 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 15 22 H -0.25 -11.08 6.86 99.48 0.68 -10.40 15 23 H 0.15 3.75 8.06 -2.91 -0.02 3.73 15 24 H 0.15 2.97 7.07 -2.91 -0.02 2.95 15 25 H 0.19 3.81 8.06 -2.91 -0.02 3.78 15 26 H 0.23 1.60 8.06 -2.91 -0.02 1.57 15 27 H 0.11 5.26 4.48 -2.91 -0.01 5.24 15 28 H 0.30 14.40 8.29 -92.71 -0.77 13.63 15 Total: -1.00 -68.32 257.85 4.82 -63.51 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: 0.42 Total: 8.04 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 5.24 Total: -13.87 kcal Atomic # 7 Polarization: -99.42 SS G_CDS: -2.53 Total: -101.95 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.68 Total: 44.27 kcal Total: -68.32 4.82 -63.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242016286.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.116 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds