Wall clock time and date at job start Sun Mar 29 2020 22:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35692 * 116.99653 * 2 1 4 4 N 1.32421 * 119.64164 * 359.97438 * 3 2 1 5 5 C 1.32073 * 121.84185 * 180.02562 * 4 3 2 6 6 C 1.37765 * 120.91758 * 0.02562 * 5 4 3 7 7 C 1.39667 * 119.18577 * 359.97438 * 6 5 4 8 8 S 1.76197 * 120.84060 * 180.02562 * 7 6 5 9 9 C 1.81405 * 103.00078 * 359.97438 * 8 7 6 10 10 C 1.38532 * 119.63775 * 179.97438 * 3 2 1 11 11 C 1.50696 * 120.49630 * 0.25427 * 10 3 2 12 12 C 1.50700 * 109.47207 * 269.72297 * 11 10 3 13 13 H 1.08000 * 120.00194 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00030 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99975 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47243 * 90.00517 * 16 14 12 18 18 H 1.48501 * 109.47179 * 210.00219 * 16 14 12 19 19 H 1.48504 * 109.47203 * 330.00000 * 16 14 12 20 20 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47624 * 299.99723 * 1 2 3 22 22 H 1.09006 * 109.46961 * 60.00222 * 1 2 3 23 23 H 1.07997 * 119.54037 * 180.02562 * 5 4 3 24 24 H 1.07997 * 120.40330 * 179.97438 * 6 5 4 25 25 H 1.08994 * 109.47478 * 180.02562 * 9 8 7 26 26 H 1.09002 * 109.46660 * 300.00520 * 9 8 7 27 27 H 1.09005 * 109.46769 * 59.99913 * 9 8 7 28 28 H 1.09008 * 109.47240 * 29.72298 * 11 10 3 29 29 H 1.09003 * 109.47630 * 149.71665 * 11 10 3 30 30 H 0.96997 * 119.99700 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 7 1.3167 2.3151 -0.0005 5 6 1.8706 3.5140 -0.0010 6 6 3.2404 3.6609 -0.0016 7 6 4.0477 2.5212 -0.0011 8 16 5.8043 2.6584 -0.0011 9 6 6.0735 4.4523 -0.0027 10 6 3.4288 1.2729 0.0005 11 6 4.2526 0.0110 -0.0046 12 6 4.5327 -0.4119 1.4144 13 1 4.1526 0.1747 2.2377 14 6 5.2742 -1.5476 1.6617 15 7 5.5182 -1.9170 2.9001 16 14 5.9311 -2.5626 0.2377 17 1 7.2779 -2.0669 -0.1437 18 1 6.0256 -3.9869 0.6472 19 1 5.0119 -2.4410 -0.9223 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.2410 4.3915 -0.0010 24 1 3.6846 4.6454 -0.0024 25 1 7.1436 4.6592 -0.0032 26 1 5.6192 4.8870 -0.8931 27 1 5.6191 4.8887 0.8870 28 1 3.7040 -0.7790 -0.5177 29 1 5.1944 0.1940 -0.5219 30 1 6.0402 -2.7158 3.0740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058076.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:02 Heat of formation + Delta-G solvation = -3.119960 kcal Electronic energy + Delta-G solvation = -14883.556590 eV Core-core repulsion = 12384.712633 eV Total energy + Delta-G solvation = -2498.843957 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.07737 -37.30831 -33.89670 -31.99865 -31.09785 -28.65666 -27.87198 -26.78115 -23.53674 -22.68064 -20.79591 -18.25146 -16.76878 -16.70099 -15.80978 -15.41602 -15.22099 -14.21847 -13.85751 -13.67855 -13.51152 -13.22766 -12.93371 -12.54454 -12.23003 -11.87662 -11.70168 -11.27926 -10.84722 -10.69193 -10.45429 -10.08595 -10.00362 -9.70955 -9.31007 -8.99114 -8.47726 -7.82397 -7.08535 -5.98171 -3.95338 1.57120 1.69062 1.82670 2.77439 3.36053 3.42750 3.47240 3.69637 4.21028 4.50356 4.74327 5.18088 5.20422 5.26762 5.38541 5.42311 5.59090 5.64763 5.66659 5.76292 5.92076 6.16021 6.18553 6.46759 6.73445 7.09580 7.31893 7.73827 7.80656 8.32150 8.56827 9.04900 9.62096 11.15112 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.011599 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.442032 B = 2413.333982 C = 3611.084255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.287 6.287 3 C 0.330 3.670 4 N -0.550 5.550 5 C 0.127 3.873 6 C -0.226 4.226 7 C -0.031 4.031 8 S -0.045 6.045 9 C -0.168 4.168 10 C -0.079 4.079 11 C 0.027 3.973 12 C -0.497 4.497 13 H 0.071 0.929 14 C 0.073 3.927 15 N -0.901 5.901 16 Si 0.871 3.129 17 H -0.275 1.275 18 H -0.287 1.287 19 H -0.264 1.264 20 H 0.091 0.909 21 H 0.054 0.946 22 H 0.051 0.949 23 H 0.152 0.848 24 H 0.129 0.871 25 H 0.104 0.896 26 H 0.078 0.922 27 H 0.081 0.919 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.224 10.879 -7.620 13.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.193 6.193 3 C 0.150 3.850 4 N -0.275 5.275 5 C -0.029 4.029 6 C -0.253 4.253 7 C -0.151 4.151 8 S 0.197 5.803 9 C -0.337 4.337 10 C -0.088 4.088 11 C -0.011 4.011 12 C -0.535 4.535 13 H 0.089 0.911 14 C -0.128 4.128 15 N -0.540 5.540 16 Si 0.698 3.302 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.188 1.188 20 H 0.109 0.891 21 H 0.073 0.927 22 H 0.070 0.930 23 H 0.169 0.831 24 H 0.146 0.854 25 H 0.123 0.877 26 H 0.097 0.903 27 H 0.100 0.900 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.983 9.602 -7.509 12.824 hybrid contribution -0.032 0.693 -0.506 0.858 sum -4.015 10.295 -8.015 13.650 Atomic orbital electron populations 1.22769 0.78568 1.02421 1.01645 1.86404 1.21516 1.23976 1.87429 1.19440 0.88705 0.84323 0.92581 1.67277 1.40877 0.98726 1.20665 1.21942 0.92013 0.93507 0.95469 1.21773 0.95215 0.97703 1.10589 1.21904 0.97963 0.94977 1.00301 1.86176 0.98795 1.04480 1.90822 1.23804 1.06239 0.98509 1.05100 1.19879 0.91386 0.96106 1.01471 1.18643 0.93677 0.89444 0.99337 1.20722 1.33250 1.09778 0.89790 0.91116 1.24887 0.95632 0.96946 0.95357 1.69891 1.40054 1.25305 1.18736 0.86894 0.79949 0.79723 0.83607 1.20037 1.21276 1.18840 0.89056 0.92708 0.93034 0.83087 0.85352 0.87713 0.90340 0.90006 0.94347 0.95289 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.65 10.38 101.05 1.05 1.70 16 2 O -0.29 -6.06 9.53 -18.78 -0.18 -6.23 16 3 C 0.33 7.05 7.46 -17.19 -0.13 6.92 16 4 N -0.55 -10.31 9.21 -13.43 -0.12 -10.44 16 5 C 0.13 2.02 11.17 -17.62 -0.20 1.82 16 6 C -0.23 -3.63 9.43 -39.22 -0.37 -4.00 16 7 C -0.03 -0.61 6.16 -38.64 -0.24 -0.85 16 8 S -0.05 -0.81 20.95 -107.50 -2.25 -3.07 16 9 C -0.17 -1.98 9.19 101.05 0.93 -1.05 16 10 C -0.08 -1.79 5.12 -104.11 -0.53 -2.32 16 11 C 0.03 0.68 3.56 -29.04 -0.10 0.58 16 12 C -0.50 -14.47 9.65 -34.44 -0.33 -14.80 16 13 H 0.07 2.27 7.98 -52.49 -0.42 1.86 16 14 C 0.07 2.15 5.47 -17.82 -0.10 2.05 16 15 N -0.90 -28.04 13.96 55.43 0.77 -27.26 16 16 Si 0.87 21.96 27.47 -169.99 -4.67 17.29 16 17 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 18 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 19 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 20 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 21 H 0.05 0.83 8.10 -51.93 -0.42 0.41 16 22 H 0.05 0.73 8.10 -51.93 -0.42 0.31 16 23 H 0.15 1.77 8.06 -52.49 -0.42 1.35 16 24 H 0.13 1.62 6.07 -52.49 -0.32 1.30 16 25 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.08 0.80 7.80 -51.92 -0.40 0.39 16 27 H 0.08 0.91 7.79 -51.92 -0.40 0.50 16 28 H 0.04 0.99 6.60 -51.92 -0.34 0.65 16 29 H 0.03 0.72 6.34 -51.93 -0.33 0.39 16 30 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 270.88 15.07 4.08 4.08 Total: -1.00 -33.00 270.88 -5.88 -38.88 By element: Atomic # 1 Polarization: 0.18 SS G_CDS: -3.50 Total: -3.31 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -0.02 Total: -9.95 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.65 Total: -37.70 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -0.18 Total: -6.23 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.67 Total: 17.29 kcal Atomic # 16 Polarization: -0.81 SS G_CDS: -2.25 Total: -3.07 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -33.00 -5.88 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058076.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.763 kcal (2) G-P(sol) polarization free energy of solvation -32.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds