Wall clock time and date at job start Sun Mar 29 2020 22:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35692 * 116.99653 * 2 1 4 4 N 1.32421 * 119.64164 * 359.97438 * 3 2 1 5 5 C 1.32073 * 121.84185 * 180.02562 * 4 3 2 6 6 C 1.37765 * 120.91758 * 0.02562 * 5 4 3 7 7 C 1.39667 * 119.18577 * 359.97438 * 6 5 4 8 8 S 1.76197 * 120.84060 * 180.02562 * 7 6 5 9 9 C 1.81405 * 103.00078 * 359.97438 * 8 7 6 10 10 C 1.38532 * 119.63775 * 179.97438 * 3 2 1 11 11 C 1.50696 * 120.49630 * 0.25427 * 10 3 2 12 12 C 1.50700 * 109.47207 * 269.72297 * 11 10 3 13 13 H 1.08000 * 120.00194 * 359.97438 * 12 11 10 14 14 C 1.37877 * 120.00083 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00030 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99975 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.47243 * 90.00517 * 16 14 12 18 18 H 1.48501 * 109.47179 * 210.00219 * 16 14 12 19 19 H 1.48504 * 109.47203 * 330.00000 * 16 14 12 20 20 H 1.08999 * 109.47175 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.47624 * 299.99723 * 1 2 3 22 22 H 1.09006 * 109.46961 * 60.00222 * 1 2 3 23 23 H 1.07997 * 119.54037 * 180.02562 * 5 4 3 24 24 H 1.07997 * 120.40330 * 179.97438 * 6 5 4 25 25 H 1.08994 * 109.47478 * 180.02562 * 9 8 7 26 26 H 1.09002 * 109.46660 * 300.00520 * 9 8 7 27 27 H 1.09005 * 109.46769 * 59.99913 * 9 8 7 28 28 H 1.09008 * 109.47240 * 29.72298 * 11 10 3 29 29 H 1.09003 * 109.47630 * 149.71665 * 11 10 3 30 30 H 0.96997 * 119.99700 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2091 0.0000 4 7 1.3167 2.3151 -0.0005 5 6 1.8706 3.5140 -0.0010 6 6 3.2404 3.6609 -0.0016 7 6 4.0477 2.5212 -0.0011 8 16 5.8043 2.6584 -0.0011 9 6 6.0735 4.4523 -0.0027 10 6 3.4288 1.2729 0.0005 11 6 4.2526 0.0110 -0.0046 12 6 4.5327 -0.4119 1.4144 13 1 4.1526 0.1747 2.2377 14 6 5.2742 -1.5476 1.6617 15 7 5.5182 -1.9170 2.9001 16 14 5.9311 -2.5626 0.2377 17 1 7.2779 -2.0669 -0.1437 18 1 6.0256 -3.9869 0.6472 19 1 5.0119 -2.4410 -0.9223 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8901 23 1 1.2410 4.3915 -0.0010 24 1 3.6846 4.6454 -0.0024 25 1 7.1436 4.6592 -0.0032 26 1 5.6192 4.8870 -0.8931 27 1 5.6191 4.8887 0.8870 28 1 3.7040 -0.7790 -0.5177 29 1 5.1944 0.1940 -0.5219 30 1 6.0402 -2.7158 3.0740 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058076.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:01 Heat of formation + Delta-G solvation = -27.054300 kcal Electronic energy + Delta-G solvation = -14884.594461 eV Core-core repulsion = 12384.712633 eV Total energy + Delta-G solvation = -2499.881828 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.51339 -38.74052 -35.77835 -33.90921 -32.56724 -29.76230 -29.58296 -28.09450 -25.33952 -24.11956 -22.53796 -19.65153 -18.98795 -18.14322 -17.18995 -16.88355 -16.71061 -16.09056 -15.23067 -15.17761 -14.72797 -14.50640 -14.34225 -14.15014 -13.73738 -13.55457 -13.25304 -12.70921 -12.59198 -12.27602 -12.16540 -11.91562 -11.67661 -11.25504 -11.19975 -10.76185 -10.41885 -9.28563 -8.51239 -8.26099 -6.28003 0.13359 0.27820 0.53436 1.35060 1.36782 1.48722 1.59189 2.32006 2.37186 2.78555 3.08344 3.44990 4.01034 4.13050 4.17337 4.34478 4.36041 4.45751 4.46157 4.66456 4.69629 4.74072 4.90147 4.99361 5.08146 5.41637 5.44067 5.59046 6.25284 6.40038 6.71903 6.91767 7.32766 8.90908 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.017836 B = 0.011599 C = 0.007752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.442032 B = 2413.333982 C = 3611.084255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.321 6.321 3 C 0.312 3.688 4 N -0.555 5.555 5 C 0.137 3.863 6 C -0.217 4.217 7 C -0.030 4.030 8 S -0.120 6.120 9 C -0.145 4.145 10 C -0.134 4.134 11 C 0.042 3.958 12 C -0.495 4.495 13 H 0.021 0.979 14 C 0.014 3.986 15 N -0.948 5.948 16 Si 0.939 3.061 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.253 1.253 20 H 0.114 0.886 21 H 0.053 0.947 22 H 0.065 0.935 23 H 0.203 0.797 24 H 0.172 0.828 25 H 0.127 0.873 26 H 0.103 0.897 27 H 0.094 0.906 28 H 0.026 0.974 29 H 0.031 0.969 30 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.473 13.220 -9.259 16.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.228 6.228 3 C 0.134 3.866 4 N -0.280 5.280 5 C -0.020 4.020 6 C -0.244 4.244 7 C -0.150 4.150 8 S 0.122 5.878 9 C -0.312 4.312 10 C -0.143 4.143 11 C 0.004 3.996 12 C -0.533 4.533 13 H 0.040 0.960 14 C -0.183 4.183 15 N -0.589 5.589 16 Si 0.762 3.238 17 H -0.186 1.186 18 H -0.205 1.205 19 H -0.176 1.176 20 H 0.132 0.868 21 H 0.072 0.928 22 H 0.084 0.916 23 H 0.220 0.780 24 H 0.189 0.811 25 H 0.145 0.855 26 H 0.122 0.878 27 H 0.113 0.887 28 H 0.044 0.956 29 H 0.049 0.951 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.244 11.943 -9.159 15.637 hybrid contribution -0.011 0.193 0.068 0.205 sum -4.255 12.136 -9.091 15.749 Atomic orbital electron populations 1.23028 0.76195 1.04219 1.02224 1.86337 1.24131 1.24738 1.87604 1.19543 0.88636 0.85157 0.93281 1.67392 1.40623 0.99014 1.21014 1.22895 0.92858 0.93915 0.92322 1.22254 0.95102 0.98324 1.08703 1.22124 0.98603 0.95088 0.99233 1.86325 0.99002 1.11746 1.90703 1.23900 1.08076 0.92381 1.06887 1.19801 0.92098 0.96228 1.06128 1.18302 0.94138 0.90893 0.96278 1.20832 1.32504 1.09163 0.90786 0.96036 1.25795 0.95985 0.98282 0.98217 1.70041 1.41428 1.26258 1.21154 0.85822 0.79822 0.77961 0.80193 1.18628 1.20487 1.17641 0.86769 0.92799 0.91623 0.78017 0.81084 0.85508 0.87825 0.88737 0.95625 0.95063 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.17 10.38 113.37 1.18 2.35 16 2 O -0.32 -13.88 9.53 -90.11 -0.86 -14.74 16 3 C 0.31 13.50 7.46 84.67 0.63 14.14 16 4 N -0.55 -19.93 9.21 -309.18 -2.85 -22.78 16 5 C 0.14 3.85 11.17 84.54 0.94 4.79 16 6 C -0.22 -6.24 9.43 22.50 0.21 -6.03 16 7 C -0.03 -1.14 6.16 22.88 0.14 -1.00 16 8 S -0.12 -4.22 20.95 -56.49 -1.18 -5.41 16 9 C -0.14 -2.84 9.19 113.37 1.04 -1.80 16 10 C -0.13 -6.16 5.12 -19.53 -0.10 -6.26 16 11 C 0.04 2.19 3.56 29.10 0.10 2.29 16 12 C -0.49 -30.20 9.65 25.60 0.25 -29.95 16 13 H 0.02 1.47 7.98 -2.91 -0.02 1.45 16 14 C 0.01 0.85 5.47 84.65 0.46 1.31 16 15 N -0.95 -61.23 13.96 21.45 0.30 -60.93 16 16 Si 0.94 46.26 27.47 68.60 1.88 48.14 16 17 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.25 -11.88 6.54 99.48 0.65 -11.23 16 20 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 21 H 0.05 1.63 8.10 -2.39 -0.02 1.61 16 22 H 0.07 1.80 8.10 -2.38 -0.02 1.78 16 23 H 0.20 3.54 8.06 -2.91 -0.02 3.52 16 24 H 0.17 3.35 6.07 -2.91 -0.02 3.33 16 25 H 0.13 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.10 1.58 7.80 -2.39 -0.02 1.56 16 27 H 0.09 1.67 7.79 -2.39 -0.02 1.66 16 28 H 0.03 1.36 6.60 -2.38 -0.02 1.35 16 29 H 0.03 1.59 6.34 -2.39 -0.02 1.58 16 30 H 0.27 16.00 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -76.61 270.88 3.24 -73.37 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.08 Total: 2.50 kcal Atomic # 6 Polarization: -25.01 SS G_CDS: 4.86 Total: -20.15 kcal Atomic # 7 Polarization: -81.16 SS G_CDS: -2.55 Total: -83.71 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.86 Total: -14.74 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 1.88 Total: 48.14 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -1.18 Total: -5.41 kcal Total: -76.61 3.24 -73.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058076.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.314 kcal (2) G-P(sol) polarization free energy of solvation -76.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds