Wall clock time and date at job start Sun Mar 29 2020 22:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38196 * 119.60890 * 84.72405 * 4 2 1 6 6 C 1.38670 * 119.18735 * 179.77569 * 5 4 2 7 7 C 1.38601 * 118.44162 * 0.48840 * 6 5 4 8 8 C 1.50695 * 120.42665 * 179.77467 * 7 6 5 9 9 C 1.50702 * 109.47104 * 99.97693 * 8 7 6 10 10 H 1.07994 * 119.99865 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99540 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99989 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47133 * 89.99643 * 13 11 9 15 15 H 1.48500 * 109.46984 * 209.99770 * 13 11 9 16 16 H 1.48497 * 109.47355 * 329.99473 * 13 11 9 17 17 C 1.38356 * 119.14828 * 359.75238 * 7 6 5 18 18 Cl 1.73602 * 119.63090 * 179.97438 * 17 7 6 19 19 N 1.31875 * 119.61235 * 264.99748 * 4 2 1 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.07996 * 120.40356 * 359.97438 * 5 4 2 28 28 H 1.08008 * 120.77530 * 180.22070 * 6 5 4 29 29 H 1.09001 * 109.47194 * 219.98130 * 8 7 6 30 30 H 1.08997 * 109.47013 * 339.97886 * 8 7 6 31 31 H 0.97008 * 119.99353 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1558 -0.0145 -2.4181 6 6 2.6233 -0.6756 -3.5438 7 6 2.9410 -2.0204 -3.4352 8 6 3.4480 -2.7838 -4.6315 9 6 4.9481 -2.9039 -4.5517 10 1 5.4809 -2.4712 -3.7180 11 6 5.6402 -3.5673 -5.5428 12 7 6.9492 -3.6726 -5.4728 13 14 4.7185 -4.3164 -6.9845 14 1 4.6085 -3.3152 -8.0758 15 1 5.4553 -5.5075 -7.4779 16 1 3.3590 -4.7220 -6.5460 17 6 2.7870 -2.6528 -2.2143 18 17 3.1805 -4.3370 -2.0644 19 7 2.3438 -1.9900 -1.1626 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.8943 1.0321 -2.4679 28 1 2.7331 -0.1559 -4.4842 29 1 3.0038 -3.7791 -4.6423 30 1 3.1740 -2.2537 -5.5436 31 1 7.4362 -4.1390 -6.1703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:30 Heat of formation + Delta-G solvation = 5.843511 kcal Electronic energy + Delta-G solvation = -14598.492230 eV Core-core repulsion = 12097.993252 eV Total energy + Delta-G solvation = -2500.498978 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.05303 -36.27456 -35.32282 -33.52427 -32.09972 -30.67172 -27.59938 -27.20969 -23.94383 -23.02651 -21.46469 -20.02938 -16.85512 -16.47502 -16.32097 -14.93218 -14.46446 -14.34836 -13.93962 -13.62619 -12.95710 -12.79000 -12.67115 -12.24511 -11.93240 -11.81841 -11.29962 -11.27182 -10.97947 -10.83566 -10.71284 -10.51046 -10.26188 -10.07753 -9.51990 -9.13565 -9.03512 -8.59487 -8.01314 -6.08885 -4.08183 1.45001 1.69141 2.53505 3.26467 3.35272 3.37717 4.08773 4.39647 4.49468 4.85664 5.14371 5.18846 5.29343 5.32952 5.41923 5.52394 5.55428 5.70881 5.78297 5.79786 5.94152 6.13155 6.21119 6.26324 6.45429 6.55297 6.87171 7.03497 7.19312 7.62535 8.21455 8.44634 8.94427 9.50450 11.04029 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035806 B = 0.006844 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.801426 B = 4090.079873 C = 4385.293305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 C -0.146 4.146 4 C 0.121 3.879 5 C -0.169 4.169 6 C -0.073 4.073 7 C -0.066 4.066 8 C 0.017 3.983 9 C -0.507 4.507 10 H 0.073 0.927 11 C 0.074 3.926 12 N -0.897 5.897 13 Si 0.873 3.127 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.263 1.263 17 C 0.176 3.824 18 Cl -0.026 7.026 19 N -0.482 5.482 20 H 0.057 0.943 21 H 0.059 0.941 22 H 0.055 0.945 23 H 0.087 0.913 24 H 0.058 0.942 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.133 0.867 28 H 0.139 0.861 29 H 0.040 0.960 30 H 0.027 0.973 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.013 7.510 7.152 15.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.060 4.060 3 C -0.204 4.204 4 C -0.017 4.017 5 C -0.189 4.189 6 C -0.099 4.099 7 C -0.069 4.069 8 C -0.021 4.021 9 C -0.545 4.545 10 H 0.091 0.909 11 C -0.128 4.128 12 N -0.535 5.535 13 Si 0.699 3.301 14 H -0.202 1.202 15 H -0.211 1.211 16 H -0.188 1.188 17 C 0.012 3.988 18 Cl 0.003 6.997 19 N -0.193 5.193 20 H 0.076 0.924 21 H 0.078 0.922 22 H 0.074 0.926 23 H 0.105 0.895 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.157 0.843 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.900 6.824 7.862 15.811 hybrid contribution -0.062 -0.195 -1.596 1.609 sum -11.961 6.629 6.267 15.043 Atomic orbital electron populations 1.21794 0.94018 1.02202 1.01713 1.19951 0.95828 0.95162 0.95087 1.21912 1.01570 0.94939 1.01949 1.20807 0.97348 0.88727 0.94816 1.21913 1.02394 1.01164 0.93408 1.21502 0.95997 0.93338 0.99051 1.20988 0.94887 0.94591 0.96466 1.18837 0.98050 0.95297 0.89907 1.20746 0.88061 1.36252 1.09411 0.90891 1.24915 0.94665 0.95442 0.97783 1.69891 1.06456 1.42809 1.34371 0.86883 0.80691 0.79354 0.83127 1.20157 1.21139 1.18793 1.21447 0.99029 0.88404 0.89937 1.98381 1.91674 1.11669 1.97997 1.66693 1.12199 1.09035 1.31346 0.92381 0.92220 0.92591 0.89514 0.92248 0.92182 0.92128 0.84876 0.84317 0.94247 0.95468 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.18 37.16 0.34 -1.11 16 2 C -0.04 -0.50 3.23 -91.77 -0.30 -0.80 16 3 C -0.15 -1.45 8.62 37.16 0.32 -1.13 16 4 C 0.12 1.95 5.79 -82.59 -0.48 1.47 16 5 C -0.17 -2.56 9.18 -39.44 -0.36 -2.93 16 6 C -0.07 -1.29 9.82 -39.29 -0.39 -1.67 16 7 C -0.07 -1.40 5.09 -104.45 -0.53 -1.93 16 8 C 0.02 0.39 3.65 -29.04 -0.11 0.29 16 9 C -0.51 -14.03 9.43 -34.44 -0.32 -14.36 16 10 H 0.07 2.24 7.98 -52.49 -0.42 1.82 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 12 N -0.90 -27.15 13.96 55.43 0.77 -26.38 16 13 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 16 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 17 C 0.18 3.68 7.26 -17.45 -0.13 3.55 16 18 Cl -0.03 -0.54 27.50 -51.86 -1.43 -1.96 16 19 N -0.48 -9.27 10.25 -6.62 -0.07 -9.34 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 21 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 22 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 23 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.54 6.49 -51.93 -0.34 0.20 16 26 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.13 1.56 6.32 -52.49 -0.33 1.23 16 28 H 0.14 2.15 8.06 -52.48 -0.42 1.73 16 29 H 0.04 0.94 6.42 -51.93 -0.33 0.60 16 30 H 0.03 0.60 7.46 -51.93 -0.39 0.22 16 31 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 276.56 15.07 4.17 4.17 Total: -1.00 -30.46 276.56 -7.20 -37.67 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -3.93 Total: -3.92 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -2.05 Total: -16.60 kcal Atomic # 7 Polarization: -36.43 SS G_CDS: 0.71 Total: -35.72 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.43 Total: -1.96 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.46 -7.20 -37.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.511 kcal (2) G-P(sol) polarization free energy of solvation -30.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds