Wall clock time and date at job start Sun Mar 29 2020 22:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 C 1.50699 * 109.47083 * 240.00115 * 2 1 3 5 5 C 1.38196 * 119.60890 * 84.72405 * 4 2 1 6 6 C 1.38670 * 119.18735 * 179.77569 * 5 4 2 7 7 C 1.38601 * 118.44162 * 0.48840 * 6 5 4 8 8 C 1.50695 * 120.42665 * 179.77467 * 7 6 5 9 9 C 1.50702 * 109.47104 * 99.97693 * 8 7 6 10 10 H 1.07994 * 119.99865 * 0.02562 * 9 8 7 11 11 C 1.37881 * 119.99865 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99540 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 119.99989 * 0.02562 * 11 9 8 14 14 H 1.48506 * 109.47133 * 89.99643 * 13 11 9 15 15 H 1.48500 * 109.46984 * 209.99770 * 13 11 9 16 16 H 1.48497 * 109.47355 * 329.99473 * 13 11 9 17 17 C 1.38356 * 119.14828 * 359.75238 * 7 6 5 18 18 Cl 1.73602 * 119.63090 * 179.97438 * 17 7 6 19 19 N 1.31875 * 119.61235 * 264.99748 * 4 2 1 20 20 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 22 22 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 26 26 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 27 27 H 1.07996 * 120.40356 * 359.97438 * 5 4 2 28 28 H 1.08008 * 120.77530 * 180.22070 * 6 5 4 29 29 H 1.09001 * 109.47194 * 219.98130 * 8 7 6 30 30 H 1.08997 * 109.47013 * 339.97886 * 8 7 6 31 31 H 0.97008 * 119.99353 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.1558 -0.0145 -2.4181 6 6 2.6233 -0.6756 -3.5438 7 6 2.9410 -2.0204 -3.4352 8 6 3.4480 -2.7838 -4.6315 9 6 4.9481 -2.9039 -4.5517 10 1 5.4809 -2.4712 -3.7180 11 6 5.6402 -3.5673 -5.5428 12 7 6.9492 -3.6726 -5.4728 13 14 4.7185 -4.3164 -6.9845 14 1 4.6085 -3.3152 -8.0758 15 1 5.4553 -5.5075 -7.4779 16 1 3.3590 -4.7220 -6.5460 17 6 2.7870 -2.6528 -2.2143 18 17 3.1805 -4.3370 -2.0644 19 7 2.3438 -1.9900 -1.1626 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 3.1299 1.4426 -0.0005 25 1 1.6766 1.9563 -0.8900 26 1 1.6767 1.9564 0.8899 27 1 1.8943 1.0321 -2.4679 28 1 2.7331 -0.1559 -4.4842 29 1 3.0038 -3.7791 -4.6423 30 1 3.1740 -2.2537 -5.5436 31 1 7.4362 -4.1390 -6.1703 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058125.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:29:30 Heat of formation + Delta-G solvation = -12.429872 kcal Electronic energy + Delta-G solvation = -14599.284624 eV Core-core repulsion = 12097.993252 eV Total energy + Delta-G solvation = -2501.291371 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42377 -37.70288 -36.66349 -35.25836 -33.83068 -32.19965 -29.26837 -27.99817 -25.55372 -24.41644 -23.04310 -21.26512 -18.98183 -17.89609 -17.61036 -16.51642 -16.00494 -15.74987 -15.11789 -14.95456 -14.53786 -14.16316 -13.91922 -13.75489 -13.54509 -12.92015 -12.59579 -12.52703 -12.37610 -12.22349 -12.09128 -11.92689 -11.89018 -11.72037 -11.55277 -10.76192 -10.61614 -10.45542 -9.51205 -8.26668 -6.30695 0.03955 0.28948 1.01057 1.36641 1.40180 1.50669 2.36962 2.69278 3.08209 3.31340 3.78731 3.98147 4.08883 4.19547 4.30072 4.34492 4.42507 4.72115 4.86470 4.93121 4.99022 5.00011 5.04806 5.10665 5.25873 5.38859 5.42703 5.49296 5.55991 5.69012 6.25312 6.72472 6.82712 7.31480 8.90043 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035806 B = 0.006844 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.801426 B = 4090.079873 C = 4385.293305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C -0.143 4.143 4 C 0.122 3.878 5 C -0.154 4.154 6 C -0.073 4.073 7 C -0.101 4.101 8 C 0.024 3.976 9 C -0.503 4.503 10 H 0.025 0.975 11 C 0.014 3.986 12 N -0.948 5.948 13 Si 0.940 3.060 14 H -0.259 1.259 15 H -0.286 1.286 16 H -0.247 1.247 17 C 0.154 3.846 18 Cl -0.044 7.044 19 N -0.502 5.502 20 H 0.040 0.960 21 H 0.084 0.916 22 H 0.066 0.934 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.076 0.924 26 H 0.084 0.916 27 H 0.179 0.821 28 H 0.162 0.838 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.362 9.616 6.851 18.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.061 4.061 3 C -0.200 4.200 4 C -0.017 4.017 5 C -0.174 4.174 6 C -0.098 4.098 7 C -0.104 4.104 8 C -0.014 4.014 9 C -0.541 4.541 10 H 0.043 0.957 11 C -0.183 4.183 12 N -0.589 5.589 13 Si 0.764 3.236 14 H -0.184 1.184 15 H -0.212 1.212 16 H -0.171 1.171 17 C -0.008 4.008 18 Cl -0.016 7.016 19 N -0.214 5.214 20 H 0.059 0.941 21 H 0.103 0.897 22 H 0.085 0.915 23 H 0.095 0.905 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.102 0.898 27 H 0.196 0.804 28 H 0.179 0.821 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.267 8.935 7.570 18.458 hybrid contribution 0.656 -0.713 -1.333 1.648 sum -13.611 8.223 6.237 17.081 Atomic orbital electron populations 1.21774 0.92222 1.01685 1.03556 1.20123 0.97175 0.96128 0.92687 1.21916 1.00840 0.93247 1.03996 1.21689 0.95351 0.87793 0.96891 1.22356 1.00188 1.02939 0.91879 1.21848 0.95007 0.92003 1.00967 1.20907 0.97624 0.96221 0.95637 1.18645 0.94894 0.95852 0.91959 1.20879 0.90484 1.35196 1.07541 0.95662 1.25837 0.95400 0.96043 1.01063 1.70052 1.08491 1.44479 1.35850 0.85800 0.79807 0.78598 0.79441 1.18392 1.21238 1.17051 1.21510 1.00501 0.88124 0.90685 1.98357 1.91974 1.13162 1.98064 1.66740 1.13061 1.10675 1.30899 0.94110 0.89670 0.91484 0.90483 0.93423 0.90554 0.89753 0.80414 0.82064 0.94716 0.93801 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 9.18 71.98 0.66 -1.68 16 2 C -0.04 -0.90 3.23 -11.54 -0.04 -0.94 16 3 C -0.14 -2.25 8.62 71.98 0.62 -1.63 16 4 C 0.12 3.67 5.79 42.54 0.25 3.91 16 5 C -0.15 -4.18 9.18 22.36 0.21 -3.97 16 6 C -0.07 -2.40 9.82 22.46 0.22 -2.18 16 7 C -0.10 -4.21 5.09 -19.75 -0.10 -4.31 16 8 C 0.02 1.13 3.65 29.10 0.11 1.23 16 9 C -0.50 -28.57 9.43 25.60 0.24 -28.33 16 10 H 0.02 1.63 7.98 -2.91 -0.02 1.60 16 11 C 0.01 0.79 5.47 84.66 0.46 1.25 16 12 N -0.95 -59.15 13.96 21.45 0.30 -58.86 16 13 Si 0.94 43.27 27.47 68.60 1.88 45.15 16 14 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 15 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.25 -10.62 6.54 99.48 0.65 -9.97 16 17 C 0.15 6.54 7.26 84.70 0.62 7.16 16 18 Cl -0.04 -1.90 27.50 -2.72 -0.07 -1.97 16 19 N -0.50 -19.21 10.25 -174.84 -1.79 -21.00 16 20 H 0.04 0.85 8.14 -2.39 -0.02 0.83 16 21 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 23 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 24 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 25 H 0.08 0.96 6.49 -2.39 -0.02 0.95 16 26 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.18 3.19 6.32 -2.91 -0.02 3.17 16 28 H 0.16 4.49 8.06 -2.91 -0.02 4.47 16 29 H 0.03 1.64 6.42 -2.39 -0.02 1.62 16 30 H 0.04 1.88 7.46 -2.39 -0.02 1.86 16 31 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -68.75 276.56 4.62 -64.12 By element: Atomic # 1 Polarization: 0.97 SS G_CDS: 1.06 Total: 2.03 kcal Atomic # 6 Polarization: -32.72 SS G_CDS: 3.24 Total: -29.48 kcal Atomic # 7 Polarization: -78.36 SS G_CDS: -1.49 Total: -79.86 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.15 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.07 Total: -1.97 kcal Total: -68.75 4.62 -64.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058125.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.694 kcal (2) G-P(sol) polarization free energy of solvation -68.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds