Wall clock time and date at job start Sun Mar 29 2020 22:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48496 * 109.47308 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.46683 * 29.99945 * 3 2 1 6 6 H 1.48494 * 109.46811 * 149.99980 * 3 2 1 7 7 C 1.37880 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99500 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.38180 * 120.35655 * 99.99980 * 11 10 9 13 13 C 1.40164 * 118.32281 * 180.02562 * 12 11 10 14 14 C 1.47600 * 120.53990 * 179.97438 * 13 12 11 15 15 O 1.21488 * 119.99877 * 0.02562 * 14 13 12 16 16 O 1.34724 * 120.00316 * 180.02562 * 14 13 12 17 17 C 1.39614 * 118.92589 * 359.97438 * 13 12 11 18 18 N 1.31649 * 120.58600 * 0.28043 * 17 13 12 19 19 C 1.32187 * 121.84474 * 359.42891 * 18 17 13 20 20 F 1.35102 * 119.48473 * 180.29694 * 19 18 17 21 21 H 0.96999 * 119.99572 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46923 * 60.00161 * 9 7 2 23 23 H 1.09002 * 109.47173 * 300.00544 * 9 7 2 24 24 H 1.08996 * 109.47137 * 60.00224 * 10 9 7 25 25 H 1.08999 * 109.46841 * 299.99832 * 10 9 7 26 26 H 1.08004 * 120.83806 * 0.03853 * 12 11 10 27 27 H 0.96694 * 116.99936 * 180.02562 * 16 14 13 28 28 H 1.08002 * 119.70365 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.3223 -5.6751 -1.1757 13 6 0.6139 -6.8836 -1.1274 14 6 0.4035 -7.6791 -2.3527 15 8 0.8462 -7.2881 -3.4143 16 8 -0.2795 -8.8389 -2.2940 17 6 0.1105 -7.3227 0.0986 18 7 0.2928 -6.6113 1.1912 19 6 0.9612 -5.4709 1.1774 20 9 1.1250 -4.7822 2.3281 21 1 -0.4849 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8719 -3.6044 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 1.7257 -5.3067 -2.1073 27 1 -0.3913 -9.3250 -3.1224 28 1 -0.4376 -8.2519 0.1501 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:30 Heat of formation + Delta-G solvation = -112.720450 kcal Electronic energy + Delta-G solvation = -16124.175625 eV Core-core repulsion = 13054.365858 eV Total energy + Delta-G solvation = -3069.809767 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.83427 -40.75329 -39.41607 -36.28928 -34.80665 -32.76757 -31.98211 -29.45448 -25.58747 -25.05681 -23.23242 -21.83843 -20.48754 -18.50323 -17.95679 -17.20348 -16.85743 -16.38156 -15.98958 -15.61580 -14.52421 -14.29933 -14.00641 -13.54126 -13.13218 -13.08588 -13.04080 -12.63118 -12.19652 -11.77520 -11.40419 -10.98669 -10.97926 -10.70359 -10.17904 -10.03209 -9.72506 -9.60552 -9.20842 -8.65907 -8.41464 -6.05874 -4.09682 0.34049 1.11246 2.34317 2.76150 3.29632 3.36075 3.39096 3.53378 3.61753 4.40741 4.50603 4.64965 4.71318 5.05047 5.26986 5.30303 5.59281 5.86298 5.89275 6.23004 6.34591 6.38700 6.50009 6.82997 7.48300 7.55411 7.64465 7.69048 7.90988 8.29966 8.96151 9.54954 11.05321 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.005640 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.468881 B = 4963.450664 C = 5501.151463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.895 3.105 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.524 4.524 8 H 0.058 0.942 9 C 0.027 3.973 10 C -0.077 4.077 11 C -0.138 4.138 12 C 0.011 3.989 13 C -0.199 4.199 14 C 0.539 3.461 15 O -0.510 6.510 16 O -0.512 6.512 17 C 0.180 3.820 18 N -0.522 5.522 19 C 0.342 3.658 20 F -0.096 7.096 21 H 0.262 0.738 22 H 0.019 0.981 23 H 0.020 0.980 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.159 0.841 27 H 0.415 0.585 28 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.600 -16.031 -2.332 16.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.562 4.562 8 H 0.076 0.924 9 C -0.010 4.010 10 C -0.114 4.114 11 C -0.142 4.142 12 C -0.014 4.014 13 C -0.203 4.203 14 C 0.382 3.618 15 O -0.398 6.398 16 O -0.324 6.324 17 C 0.021 3.979 18 N -0.236 5.236 19 C 0.191 3.809 20 F -0.074 7.074 21 H 0.071 0.929 22 H 0.037 0.963 23 H 0.039 0.961 24 H 0.091 0.909 25 H 0.091 0.909 26 H 0.176 0.824 27 H 0.274 0.726 28 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 0.296 -15.825 -1.397 15.889 hybrid contribution 0.559 1.037 -1.065 1.588 sum 0.855 -14.788 -2.463 15.016 Atomic orbital electron populations 1.69969 1.06109 1.26813 1.50295 1.25027 0.94866 0.99370 0.95092 0.86548 0.79829 0.83238 0.78135 1.20603 1.21177 1.19778 1.21157 0.93094 0.90618 1.51324 0.92354 1.19123 0.93614 0.90439 0.97780 1.20875 0.98564 0.89229 1.02781 1.21167 1.01648 1.00041 0.91317 1.21590 0.91057 0.89917 0.98827 1.20015 1.08746 0.98354 0.93170 1.20467 0.74275 0.78782 0.88248 1.90919 1.47819 1.69973 1.31138 1.84534 1.69894 1.34785 1.43225 1.22787 0.92778 0.97275 0.85096 1.67078 1.17094 1.06785 1.32596 1.18373 0.92683 0.87745 0.82149 1.91675 1.92161 1.76305 1.47278 0.92853 0.96261 0.96135 0.90876 0.90850 0.82372 0.72563 0.80523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.65 13.29 55.43 0.74 -25.91 15 2 C 0.06 1.65 5.46 -17.81 -0.10 1.55 15 3 Si 0.89 21.40 29.54 -169.99 -5.02 16.38 15 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 5 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 6 H -0.27 -6.37 7.11 56.52 0.40 -5.97 15 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 15 8 H 0.06 1.54 7.74 -52.49 -0.41 1.14 15 9 C 0.03 0.69 4.95 -27.88 -0.14 0.55 15 10 C -0.08 -1.50 5.02 -27.88 -0.14 -1.64 15 11 C -0.14 -2.38 5.15 -104.47 -0.54 -2.92 15 12 C 0.01 0.17 9.35 -38.88 -0.36 -0.20 15 13 C -0.20 -2.65 5.89 -104.84 -0.62 -3.27 15 14 C 0.54 6.48 8.28 34.55 0.29 6.77 15 15 O -0.51 -7.57 17.20 -19.26 -0.33 -7.90 15 16 O -0.51 -4.15 12.70 -40.56 -0.52 -4.66 15 17 C 0.18 2.30 10.79 -17.12 -0.18 2.11 15 18 N -0.52 -8.27 10.36 -13.20 -0.14 -8.40 15 19 C 0.34 5.99 8.36 -17.22 -0.14 5.85 15 20 F -0.10 -1.80 16.68 2.25 0.04 -1.76 15 21 H 0.26 7.37 8.31 -40.82 -0.34 7.03 15 22 H 0.02 0.51 8.14 -51.93 -0.42 0.09 15 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 15 24 H 0.07 1.40 7.95 -51.93 -0.41 0.99 15 25 H 0.07 1.33 8.03 -51.93 -0.42 0.91 15 26 H 0.16 2.26 7.73 -52.48 -0.41 1.86 15 27 H 0.42 1.45 9.11 45.56 0.42 1.87 15 28 H 0.18 1.65 7.62 -52.49 -0.40 1.25 15 LS Contribution 266.22 15.07 4.01 4.01 Total: -1.00 -32.44 266.22 -5.08 -37.51 By element: Atomic # 1 Polarization: -1.69 SS G_CDS: -1.61 Total: -3.30 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: -2.25 Total: -5.96 kcal Atomic # 7 Polarization: -34.91 SS G_CDS: 0.60 Total: -34.31 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: -0.85 Total: -12.57 kcal Atomic # 9 Polarization: -1.80 SS G_CDS: 0.04 Total: -1.76 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.44 -5.08 -37.51 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.209 kcal (2) G-P(sol) polarization free energy of solvation -32.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds