Wall clock time and date at job start Sun Mar 29 2020 22:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31525 * 1 3 3 Si 1.86800 * 120.00064 * 2 1 4 4 H 1.48496 * 109.47308 * 270.00217 * 3 2 1 5 5 H 1.48505 * 109.46683 * 29.99945 * 3 2 1 6 6 H 1.48494 * 109.46811 * 149.99980 * 3 2 1 7 7 C 1.37880 * 119.99650 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99500 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46916 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.46916 * 180.02562 * 10 9 7 12 12 C 1.38180 * 120.35655 * 99.99980 * 11 10 9 13 13 C 1.40164 * 118.32281 * 180.02562 * 12 11 10 14 14 C 1.47600 * 120.53990 * 179.97438 * 13 12 11 15 15 O 1.21488 * 119.99877 * 0.02562 * 14 13 12 16 16 O 1.34724 * 120.00316 * 180.02562 * 14 13 12 17 17 C 1.39614 * 118.92589 * 359.97438 * 13 12 11 18 18 N 1.31649 * 120.58600 * 0.28043 * 17 13 12 19 19 C 1.32187 * 121.84474 * 359.42891 * 18 17 13 20 20 F 1.35102 * 119.48473 * 180.29694 * 19 18 17 21 21 H 0.96999 * 119.99572 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.46923 * 60.00161 * 9 7 2 23 23 H 1.09002 * 109.47173 * 300.00544 * 9 7 2 24 24 H 1.08996 * 109.47137 * 60.00224 * 10 9 7 25 25 H 1.08999 * 109.46841 * 299.99832 * 10 9 7 26 26 H 1.08004 * 120.83806 * 0.03853 * 12 11 10 27 27 H 0.96694 * 116.99936 * 180.02562 * 16 14 13 28 28 H 1.08002 * 119.70365 * 179.97438 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 6 1.4918 -4.9672 -0.0012 12 6 1.3223 -5.6751 -1.1757 13 6 0.6139 -6.8836 -1.1274 14 6 0.4035 -7.6791 -2.3527 15 8 0.8462 -7.2881 -3.4143 16 8 -0.2795 -8.8389 -2.2940 17 6 0.1105 -7.3227 0.0986 18 7 0.2928 -6.6113 1.1912 19 6 0.9612 -5.4709 1.1774 20 9 1.1250 -4.7822 2.3281 21 1 -0.4849 0.8401 0.0004 22 1 0.6241 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 2.8719 -3.6044 0.8894 25 1 2.8719 -3.6043 -0.8905 26 1 1.7257 -5.3067 -2.1073 27 1 -0.3913 -9.3250 -3.1224 28 1 -0.4376 -8.2519 0.1501 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059939.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:29 Heat of formation + Delta-G solvation = -134.945791 kcal Electronic energy + Delta-G solvation = -16125.139388 eV Core-core repulsion = 13054.365858 eV Total energy + Delta-G solvation = -3070.773530 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.22183 -41.82593 -40.47540 -37.14793 -36.45454 -34.56514 -33.29520 -31.13285 -27.33556 -26.20667 -24.68734 -23.27815 -21.88433 -19.52285 -19.21834 -18.63358 -18.15804 -17.89734 -17.30873 -16.65240 -16.50401 -15.58447 -15.16541 -14.98980 -14.58795 -14.43602 -14.30216 -14.18896 -13.86033 -13.23374 -12.84746 -12.61666 -12.58800 -12.02762 -11.95221 -11.78025 -11.34007 -11.05228 -10.85392 -10.57498 -10.02488 -8.21610 -6.33363 -0.82410 -0.08740 1.30806 1.41177 1.42412 1.53544 1.87650 2.32783 2.39863 2.45571 3.12372 3.33838 3.46166 3.59773 3.86777 4.09748 4.46695 4.55272 4.69567 4.73913 4.90952 5.00798 5.31414 5.45626 5.51409 5.61558 5.78956 6.17762 6.32330 6.82824 6.92784 7.36361 8.90340 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.032270 B = 0.005640 C = 0.005089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 867.468881 B = 4963.450664 C = 5501.151463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.001 4.001 3 Si 0.967 3.033 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.033 3.967 10 C -0.063 4.063 11 C -0.156 4.156 12 C 0.015 3.985 13 C -0.195 4.195 14 C 0.552 3.448 15 O -0.540 6.540 16 O -0.494 6.494 17 C 0.197 3.803 18 N -0.533 5.533 19 C 0.324 3.676 20 F -0.112 7.112 21 H 0.264 0.736 22 H -0.005 1.005 23 H -0.011 1.011 24 H 0.073 0.927 25 H 0.088 0.912 26 H 0.165 0.835 27 H 0.439 0.561 28 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -17.406 -3.077 17.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.199 4.199 3 Si 0.791 3.209 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.185 1.185 7 C -0.580 4.580 8 H 0.086 0.914 9 C -0.004 4.004 10 C -0.101 4.101 11 C -0.159 4.159 12 C -0.010 4.010 13 C -0.198 4.198 14 C 0.396 3.604 15 O -0.431 6.431 16 O -0.308 6.308 17 C 0.038 3.962 18 N -0.247 5.247 19 C 0.173 3.827 20 F -0.091 7.091 21 H 0.072 0.928 22 H 0.013 0.987 23 H 0.007 0.993 24 H 0.091 0.909 25 H 0.106 0.894 26 H 0.182 0.818 27 H 0.303 0.697 28 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 0.721 -17.241 -2.147 17.389 hybrid contribution 0.340 1.288 -0.885 1.599 sum 1.061 -15.953 -3.032 16.273 Atomic orbital electron populations 1.70110 1.07919 1.27842 1.51535 1.26003 0.95742 1.03492 0.94638 0.85418 0.78677 0.78253 0.78539 1.19642 1.21015 1.18519 1.21656 0.93819 0.91837 1.50700 0.91425 1.18948 0.94044 0.92414 0.94996 1.20556 0.97456 0.88567 1.03490 1.20879 1.03067 0.99707 0.92250 1.21688 0.90780 0.90441 0.98128 1.20158 1.07624 0.97739 0.94303 1.20076 0.74000 0.79369 0.86925 1.90927 1.49251 1.70975 1.31976 1.84468 1.68317 1.33070 1.44963 1.23471 0.91226 0.97609 0.83891 1.67166 1.17200 1.06393 1.33939 1.18522 0.93772 0.88601 0.81782 1.91623 1.92478 1.76901 1.48120 0.92765 0.98700 0.99277 0.90870 0.89394 0.81797 0.69741 0.76425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.11 13.29 21.45 0.28 -56.82 15 2 C 0.00 -0.05 5.46 84.65 0.46 0.41 15 3 Si 0.97 44.05 29.54 68.60 2.03 46.08 15 4 H -0.27 -11.89 7.11 99.48 0.71 -11.18 15 5 H -0.28 -12.79 7.11 99.48 0.71 -12.09 15 6 H -0.26 -11.30 7.11 99.48 0.71 -10.59 15 7 C -0.54 -30.41 9.11 25.60 0.23 -30.18 15 8 H 0.07 3.57 7.74 -2.91 -0.02 3.55 15 9 C 0.03 1.73 4.95 29.85 0.15 1.87 15 10 C -0.06 -2.50 5.02 29.85 0.15 -2.35 15 11 C -0.16 -5.39 5.15 -19.76 -0.10 -5.49 15 12 C 0.01 0.43 9.35 22.72 0.21 0.64 15 13 C -0.19 -4.74 5.89 -20.01 -0.12 -4.86 15 14 C 0.55 11.62 8.28 70.29 0.58 12.20 15 15 O -0.54 -14.87 17.20 19.88 0.34 -14.53 15 16 O -0.49 -5.89 12.70 -56.34 -0.72 -6.60 15 17 C 0.20 4.48 10.79 85.05 0.92 5.40 15 18 N -0.53 -16.24 10.36 -195.67 -2.03 -18.27 15 19 C 0.32 11.45 8.36 84.75 0.71 12.16 15 20 F -0.11 -4.39 16.68 44.97 0.75 -3.63 15 21 H 0.26 15.15 8.31 -92.71 -0.77 14.38 15 22 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 15 23 H -0.01 -0.65 8.14 -2.39 -0.02 -0.66 15 24 H 0.07 2.86 7.95 -2.39 -0.02 2.84 15 25 H 0.09 3.17 8.03 -2.39 -0.02 3.15 15 26 H 0.16 4.56 7.73 -2.91 -0.02 4.54 15 27 H 0.44 1.15 9.11 -74.06 -0.67 0.48 15 28 H 0.22 3.07 7.62 -2.91 -0.02 3.05 15 Total: -1.00 -71.21 266.22 4.39 -66.82 By element: Atomic # 1 Polarization: -3.40 SS G_CDS: 0.53 Total: -2.86 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: 3.19 Total: -10.18 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -1.74 Total: -75.09 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.37 Total: -21.13 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.75 Total: -3.63 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.21 4.39 -66.82 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059939.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.126 kcal (2) G-P(sol) polarization free energy of solvation -71.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds