Wall clock time and date at job start Sun Mar 29 2020 22:20:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86792 * 120.00395 * 2 1 4 4 H 1.48511 * 109.47038 * 240.00112 * 3 2 1 5 5 H 1.48501 * 109.47203 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47239 * 120.00176 * 3 2 1 7 7 C 1.37882 * 119.99644 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00049 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00039 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46873 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.46576 * 179.97438 * 10 9 7 12 12 C 1.50704 * 109.46805 * 179.97438 * 11 10 9 13 13 C 1.38121 * 120.03355 * 264.99990 * 12 11 10 14 14 C 1.38363 * 120.06737 * 179.97438 * 13 12 11 15 15 Cl 1.73591 * 119.94276 * 180.02562 * 14 13 12 16 16 C 1.38403 * 120.11828 * 0.02562 * 14 13 12 17 17 C 1.38091 * 120.06292 * 0.03709 * 16 14 13 18 18 C 1.38885 * 120.02818 * 85.29372 * 12 11 10 19 19 N 1.39735 * 120.06407 * 0.02650 * 18 12 11 20 20 H 0.97001 * 119.99840 * 359.97438 * 1 2 3 21 21 H 1.08994 * 109.47244 * 59.99718 * 9 7 2 22 22 H 1.09000 * 109.46905 * 299.99733 * 9 7 2 23 23 H 1.09003 * 109.47360 * 60.00123 * 10 9 7 24 24 H 1.09000 * 109.47296 * 299.99688 * 10 9 7 25 25 H 1.08994 * 109.47273 * 60.00078 * 11 10 9 26 26 H 1.09000 * 109.47173 * 299.99910 * 11 10 9 27 27 H 1.08007 * 119.97047 * 0.02562 * 13 12 11 28 28 H 1.07999 * 119.96739 * 180.02562 * 16 14 13 29 29 H 1.08002 * 120.02785 * 179.97438 * 17 16 14 30 30 H 0.96998 * 119.99908 * 180.27260 * 19 18 12 31 31 H 0.97003 * 120.00116 * 0.27599 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6962 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 6 1.4800 -4.9872 0.0012 12 6 2.4592 -6.1327 0.0005 13 6 2.8283 -6.7259 -1.1909 14 6 3.7278 -7.7774 -1.1923 15 17 4.1899 -8.5202 -2.6917 16 6 4.2597 -8.2379 -0.0005 17 6 3.8932 -7.6494 1.1938 18 6 2.9867 -6.5968 1.1986 19 7 2.6100 -6.0029 2.4060 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5571 -0.8896 22 1 0.6239 -2.5567 0.8903 23 1 2.8718 -3.6045 0.8905 24 1 2.8718 -3.6045 -0.8895 25 1 0.8530 -5.0451 -0.8885 26 1 0.8536 -5.0446 0.8914 27 1 2.4152 -6.3683 -2.1225 28 1 4.9618 -9.0585 -0.0045 29 1 4.3083 -8.0095 2.1236 30 1 2.9820 -6.3252 3.2419 31 1 1.9764 -5.2684 2.4084 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065998.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:16 Heat of formation + Delta-G solvation = -28.601693 kcal Electronic energy + Delta-G solvation = -14166.429394 eV Core-core repulsion = 11664.436760 eV Total energy + Delta-G solvation = -2501.992634 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.63162 -37.50093 -36.36116 -35.11770 -34.40338 -31.93436 -29.59500 -28.27092 -25.45177 -23.39201 -22.50475 -21.51193 -18.52158 -18.10773 -17.97416 -16.84551 -16.49277 -15.58169 -15.17042 -14.98076 -14.77178 -14.53936 -13.99242 -13.76564 -13.33820 -12.98445 -12.89908 -12.63722 -12.43173 -12.40671 -12.23804 -11.73475 -11.46770 -11.29633 -11.12363 -11.02465 -10.53833 -9.74030 -8.33649 -8.18497 -6.30003 0.41660 0.51009 1.38407 1.39905 1.42405 1.50445 2.41282 2.80453 3.04276 3.13795 3.84021 3.92966 4.21991 4.34195 4.52889 4.54377 4.63737 4.81146 4.96572 5.09474 5.15779 5.27146 5.30579 5.39692 5.51508 5.54847 5.77824 5.81921 5.89321 6.27257 6.55670 6.86693 6.99168 7.39089 8.91982 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.031895 B = 0.004782 C = 0.004456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.666228 B = 5853.273566 C = 6282.460940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.065 4.065 12 C -0.155 4.155 13 C -0.072 4.072 14 C -0.104 4.104 15 Cl -0.086 7.086 16 C -0.067 4.067 17 C -0.187 4.187 18 C 0.221 3.779 19 N -0.865 5.865 20 H 0.263 0.737 21 H -0.010 1.010 22 H -0.002 1.002 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.070 0.930 27 H 0.126 0.874 28 H 0.151 0.849 29 H 0.155 0.845 30 H 0.410 0.590 31 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.645 -17.005 2.656 18.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.013 4.013 10 C -0.125 4.125 11 C -0.102 4.102 12 C -0.160 4.160 13 C -0.092 4.092 14 C -0.133 4.133 15 Cl -0.058 7.058 16 C -0.086 4.086 17 C -0.210 4.210 18 C 0.113 3.887 19 N -0.405 5.405 20 H 0.072 0.928 21 H 0.008 0.992 22 H 0.016 0.984 23 H 0.069 0.931 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.088 0.912 27 H 0.144 0.856 28 H 0.169 0.831 29 H 0.173 0.827 30 H 0.240 0.760 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 7.539 -16.964 2.523 18.735 hybrid contribution -0.049 1.210 -0.058 1.212 sum 7.490 -15.755 2.465 17.618 Atomic orbital electron populations 1.70079 1.07678 1.27775 1.51666 1.25926 0.95733 1.03143 0.94760 0.85567 0.78358 0.78412 0.79122 1.19473 1.20725 1.19129 1.21674 0.93383 0.92616 1.50567 0.92639 1.19031 0.94386 0.92863 0.95008 1.21387 0.97760 0.93039 1.00272 1.20387 0.95948 0.91431 1.02447 1.19419 1.03901 1.00681 0.92032 1.20781 0.96132 0.94247 0.98011 1.20652 1.04687 1.00563 0.87392 1.98323 1.91805 1.82037 1.33586 1.20976 0.98453 0.99383 0.89815 1.20769 1.02174 0.98833 0.99256 1.17869 0.92464 0.91798 0.86525 1.42657 1.51855 1.40528 1.05420 0.92779 0.99154 0.98395 0.93075 0.94025 0.91689 0.91192 0.85575 0.83148 0.82733 0.75996 0.76829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 44.33 29.54 68.60 2.03 46.35 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 7 C -0.54 -31.12 9.11 25.60 0.23 -30.89 16 8 H 0.06 3.07 7.74 -2.91 -0.02 3.05 16 9 C 0.02 1.26 4.97 29.85 0.15 1.41 16 10 C -0.09 -3.55 5.14 30.60 0.16 -3.39 16 11 C -0.06 -2.15 4.79 29.85 0.14 -2.00 16 12 C -0.16 -4.55 5.15 -19.74 -0.10 -4.65 16 13 C -0.07 -2.06 9.46 22.27 0.21 -1.85 16 14 C -0.10 -2.66 6.32 22.34 0.14 -2.51 16 15 Cl -0.09 -2.04 28.95 -2.72 -0.08 -2.12 16 16 C -0.07 -1.44 9.82 22.27 0.22 -1.22 16 17 C -0.19 -3.89 9.90 22.40 0.22 -3.67 16 18 C 0.22 5.50 6.74 38.20 0.26 5.76 16 19 N -0.87 -18.27 8.99 -51.34 -0.46 -18.73 16 20 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 21 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 22 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 23 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 25 H 0.06 2.19 8.05 -2.39 -0.02 2.17 16 26 H 0.07 2.19 6.79 -2.39 -0.02 2.17 16 27 H 0.13 3.56 8.06 -2.91 -0.02 3.54 16 28 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 29 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 30 H 0.41 6.14 8.84 -92.71 -0.82 5.32 16 31 H 0.40 9.37 6.93 -92.71 -0.64 8.73 16 Total: -1.00 -64.20 282.34 3.54 -60.66 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -0.32 Total: 12.53 kcal Atomic # 6 Polarization: -44.52 SS G_CDS: 2.09 Total: -42.42 kcal Atomic # 7 Polarization: -74.81 SS G_CDS: -0.18 Total: -74.99 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 17 Polarization: -2.04 SS G_CDS: -0.08 Total: -2.12 kcal Total: -64.20 3.54 -60.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065998.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.054 kcal (2) G-P(sol) polarization free energy of solvation -64.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds