Wall clock time and date at job start Sun Mar 29 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99533 * 2 1 4 4 H 1.48495 * 109.47356 * 269.99746 * 3 2 1 5 5 H 1.48498 * 109.47435 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.47058 * 150.00024 * 3 2 1 7 7 C 1.37876 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47075 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47144 * 180.02562 * 11 10 9 13 13 C 1.38137 * 120.02393 * 265.00292 * 12 11 10 14 14 C 1.38247 * 120.08496 * 180.30151 * 13 12 11 15 15 C 1.38426 * 120.13349 * 359.43661 * 14 13 12 16 16 Cl 1.73599 * 119.97180 * 180.29940 * 15 14 13 17 17 C 1.38190 * 120.05090 * 0.56125 * 15 14 13 18 18 C 1.38895 * 120.02606 * 85.01903 * 12 11 10 19 19 N 1.39677 * 120.06595 * 359.96220 * 18 12 11 20 20 H 0.96993 * 120.00251 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46989 * 59.99459 * 9 7 2 22 22 H 1.08998 * 109.46963 * 300.00113 * 9 7 2 23 23 H 1.09002 * 109.47069 * 60.00021 * 10 9 7 24 24 H 1.08998 * 109.47392 * 299.99941 * 10 9 7 25 25 H 1.09002 * 109.47219 * 60.00087 * 11 10 9 26 26 H 1.08998 * 109.46985 * 300.00164 * 11 10 9 27 27 H 1.08002 * 119.95392 * 0.02562 * 13 12 11 28 28 H 1.08001 * 119.92841 * 179.70442 * 14 13 12 29 29 H 1.08007 * 120.04517 * 179.74046 * 17 15 14 30 30 H 0.96997 * 120.00173 * 359.97438 * 19 18 12 31 31 H 0.97002 * 119.99915 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4599 -6.1325 0.0005 13 6 2.8308 -6.7254 -1.1907 14 6 3.7243 -7.7803 -1.1911 15 6 4.2592 -8.2383 0.0007 16 17 5.3869 -9.5582 -0.0054 17 6 3.8922 -7.6492 1.1956 18 6 2.9901 -6.5929 1.1989 19 7 2.6171 -5.9949 2.4048 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 2.8721 -3.6042 0.8905 24 1 2.8721 -3.6043 -0.8894 25 1 0.8542 -5.0446 -0.8903 26 1 0.8536 -5.0451 0.8896 27 1 2.4187 -6.3673 -2.1226 28 1 4.0089 -8.2451 -2.1235 29 1 4.3064 -8.0094 2.1258 30 1 1.9875 -5.2570 2.4059 31 1 2.9882 -6.3170 3.2411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250066375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:20 Heat of formation + Delta-G solvation = -11.559966 kcal Electronic energy + Delta-G solvation = -14132.098348 eV Core-core repulsion = 11630.844699 eV Total energy + Delta-G solvation = -2501.253649 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.59301 -36.64447 -34.71747 -34.17745 -32.53199 -30.27239 -28.72728 -26.59770 -23.64972 -22.41120 -21.04276 -20.00705 -17.30169 -17.03785 -16.29742 -15.39986 -14.52373 -14.36320 -14.13315 -13.73249 -13.68751 -13.35543 -12.44077 -12.28238 -11.84806 -11.64255 -11.28452 -11.16853 -10.89302 -10.76159 -10.70318 -10.47556 -10.31318 -9.69128 -9.36549 -9.12125 -8.49818 -8.36026 -7.40645 -6.01194 -4.03496 1.33848 1.62581 2.17432 3.31055 3.37402 3.40878 3.83750 3.99382 4.45280 4.91117 5.13689 5.22376 5.34620 5.46719 5.65759 5.78774 5.88611 6.05594 6.18914 6.34597 6.41035 6.53248 6.79939 6.85028 6.89068 7.11920 7.53614 7.66336 7.79788 7.85085 7.99021 8.42148 9.03832 9.60842 11.09982 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.045608 B = 0.004245 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.785859 B = 6593.969706 C = 6646.602929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.020 3.980 10 C -0.104 4.104 11 C -0.077 4.077 12 C -0.138 4.138 13 C -0.061 4.061 14 C -0.170 4.170 15 C 0.005 3.995 16 Cl -0.086 7.086 17 C -0.196 4.196 18 C 0.232 3.768 19 N -0.871 5.871 20 H 0.260 0.740 21 H 0.016 0.984 22 H 0.014 0.986 23 H 0.047 0.953 24 H 0.049 0.951 25 H 0.070 0.930 26 H 0.062 0.938 27 H 0.131 0.869 28 H 0.125 0.875 29 H 0.126 0.874 30 H 0.407 0.593 31 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -16.334 1.709 17.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.017 4.017 10 C -0.142 4.142 11 C -0.115 4.115 12 C -0.143 4.143 13 C -0.080 4.080 14 C -0.191 4.191 15 C -0.022 4.022 16 Cl -0.057 7.057 17 C -0.219 4.219 18 C 0.126 3.874 19 N -0.410 5.410 20 H 0.070 0.930 21 H 0.034 0.966 22 H 0.033 0.967 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.089 0.911 26 H 0.080 0.920 27 H 0.148 0.852 28 H 0.143 0.857 29 H 0.144 0.856 30 H 0.238 0.762 31 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 6.029 -16.333 1.696 17.492 hybrid contribution 0.506 0.996 0.347 1.170 sum 6.535 -15.336 2.043 16.796 Atomic orbital electron populations 1.69960 1.06036 1.26578 1.50991 1.25019 0.94833 0.99221 0.95353 0.86616 0.79857 0.83531 0.78142 1.20646 1.21238 1.19908 1.21266 0.93039 0.91126 1.50414 0.92764 1.19125 0.93984 0.91395 0.97172 1.21648 0.98960 0.92956 1.00637 1.20628 0.95927 0.92642 1.02288 1.19784 1.02652 1.00361 0.91503 1.20806 0.95666 0.93976 0.97582 1.20730 1.01625 1.00287 0.96467 1.20476 0.95033 0.91915 0.94822 1.98341 1.60912 1.47460 1.98978 1.20278 1.04062 1.00336 0.97273 1.17421 0.92169 0.90998 0.86804 1.42606 1.52688 1.40570 1.05169 0.93024 0.96572 0.96722 0.93433 0.93169 0.91124 0.91980 0.85159 0.85671 0.85622 0.76215 0.77661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.08 5.13 -26.73 -0.14 -2.22 16 11 C -0.08 -1.26 4.78 -27.88 -0.13 -1.39 16 12 C -0.14 -2.04 5.15 -104.42 -0.54 -2.58 16 13 C -0.06 -0.84 9.67 -39.62 -0.38 -1.22 16 14 C -0.17 -2.18 9.83 -39.51 -0.39 -2.57 16 15 C 0.00 0.06 6.32 -39.53 -0.25 -0.19 16 16 Cl -0.09 -0.99 28.95 -51.86 -1.50 -2.49 16 17 C -0.20 -2.52 9.68 -39.35 -0.38 -2.90 16 18 C 0.23 3.19 6.73 -83.79 -0.56 2.62 16 19 N -0.87 -10.27 8.99 32.41 0.29 -9.97 16 20 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 21 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 23 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.07 1.13 8.05 -51.93 -0.42 0.71 16 26 H 0.06 0.96 6.81 -51.93 -0.35 0.61 16 27 H 0.13 1.59 8.06 -52.49 -0.42 1.16 16 28 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 29 H 0.13 1.39 8.06 -52.48 -0.42 0.97 16 30 H 0.41 5.04 6.94 -40.82 -0.28 4.75 16 31 H 0.40 3.63 8.84 -40.82 -0.36 3.27 16 LS Contribution 282.36 15.07 4.26 4.26 Total: -1.00 -29.94 282.36 -8.48 -38.43 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -3.92 Total: 2.70 kcal Atomic # 6 Polarization: -20.17 SS G_CDS: -3.32 Total: -23.50 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 1.03 Total: -35.95 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -0.99 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.94 -8.48 -38.43 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.865 kcal (2) G-P(sol) polarization free energy of solvation -29.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds