Wall clock time and date at job start Sun Mar 29 2020 22:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99533 * 2 1 4 4 H 1.48495 * 109.47356 * 269.99746 * 3 2 1 5 5 H 1.48498 * 109.47435 * 29.99874 * 3 2 1 6 6 H 1.48500 * 109.47058 * 150.00024 * 3 2 1 7 7 C 1.37876 * 120.00207 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99978 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.52994 * 109.47075 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46989 * 180.02562 * 10 9 7 12 12 C 1.50701 * 109.47144 * 180.02562 * 11 10 9 13 13 C 1.38137 * 120.02393 * 265.00292 * 12 11 10 14 14 C 1.38247 * 120.08496 * 180.30151 * 13 12 11 15 15 C 1.38426 * 120.13349 * 359.43661 * 14 13 12 16 16 Cl 1.73599 * 119.97180 * 180.29940 * 15 14 13 17 17 C 1.38190 * 120.05090 * 0.56125 * 15 14 13 18 18 C 1.38895 * 120.02606 * 85.01903 * 12 11 10 19 19 N 1.39677 * 120.06595 * 359.96220 * 18 12 11 20 20 H 0.96993 * 120.00251 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46989 * 59.99459 * 9 7 2 22 22 H 1.08998 * 109.46963 * 300.00113 * 9 7 2 23 23 H 1.09002 * 109.47069 * 60.00021 * 10 9 7 24 24 H 1.08998 * 109.47392 * 299.99941 * 10 9 7 25 25 H 1.09002 * 109.47219 * 60.00087 * 11 10 9 26 26 H 1.08998 * 109.46985 * 300.00164 * 11 10 9 27 27 H 1.08002 * 119.95392 * 0.02562 * 13 12 11 28 28 H 1.08001 * 119.92841 * 179.70442 * 14 13 12 29 29 H 1.08007 * 120.04517 * 179.74046 * 17 15 14 30 30 H 0.96997 * 120.00173 * 359.97438 * 19 18 12 31 31 H 0.97002 * 119.99915 * 180.02562 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4992 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 6 2.4599 -6.1325 0.0005 13 6 2.8308 -6.7254 -1.1907 14 6 3.7243 -7.7803 -1.1911 15 6 4.2592 -8.2383 0.0007 16 17 5.3869 -9.5582 -0.0054 17 6 3.8922 -7.6492 1.1956 18 6 2.9901 -6.5929 1.1989 19 7 2.6171 -5.9949 2.4048 20 1 -0.4850 0.8400 -0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5567 0.8903 23 1 2.8721 -3.6042 0.8905 24 1 2.8721 -3.6043 -0.8894 25 1 0.8542 -5.0446 -0.8903 26 1 0.8536 -5.0451 0.8896 27 1 2.4187 -6.3673 -2.1226 28 1 4.0089 -8.2451 -2.1235 29 1 4.3064 -8.0094 2.1258 30 1 1.9875 -5.2570 2.4059 31 1 2.9882 -6.3170 3.2411 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250066375.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:20 Heat of formation + Delta-G solvation = -28.243090 kcal Electronic energy + Delta-G solvation = -14132.821782 eV Core-core repulsion = 11630.844699 eV Total energy + Delta-G solvation = -2501.977084 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.63755 -37.63429 -36.30803 -35.26474 -34.35565 -31.75375 -29.83506 -28.20552 -25.36568 -23.45458 -22.49924 -21.49441 -18.52550 -18.20973 -18.04660 -16.62179 -16.35872 -15.58440 -15.23357 -15.11042 -14.79959 -14.55347 -14.17438 -13.84121 -13.25588 -12.94347 -12.83017 -12.67224 -12.35452 -12.32583 -12.18653 -11.82503 -11.47397 -11.28916 -11.27709 -11.06974 -10.53702 -9.56804 -8.42689 -8.18467 -6.29540 0.29166 0.61704 1.19848 1.40404 1.41002 1.52124 2.41504 2.79593 3.04330 3.14165 3.89773 3.98312 4.19557 4.37300 4.54140 4.56755 4.62790 4.84868 4.92728 5.02636 5.17076 5.28321 5.29847 5.42106 5.55260 5.63804 5.80843 5.81364 5.90601 6.28094 6.54620 6.87641 6.96346 7.39655 8.92393 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.045608 B = 0.004245 C = 0.004212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.785859 B = 6593.969706 C = 6646.602929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.087 4.087 11 C -0.065 4.065 12 C -0.160 4.160 13 C -0.065 4.065 14 C -0.174 4.174 15 C 0.000 4.000 16 Cl -0.073 7.073 17 C -0.199 4.199 18 C 0.227 3.773 19 N -0.866 5.866 20 H 0.263 0.737 21 H -0.008 1.008 22 H -0.004 1.004 23 H 0.048 0.952 24 H 0.044 0.956 25 H 0.069 0.931 26 H 0.066 0.934 27 H 0.140 0.860 28 H 0.143 0.857 29 H 0.143 0.857 30 H 0.404 0.596 31 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 -16.854 1.892 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.125 4.125 11 C -0.103 4.103 12 C -0.165 4.165 13 C -0.084 4.084 14 C -0.195 4.195 15 C -0.027 4.027 16 Cl -0.044 7.044 17 C -0.222 4.222 18 C 0.120 3.880 19 N -0.406 5.406 20 H 0.072 0.928 21 H 0.010 0.990 22 H 0.015 0.985 23 H 0.066 0.934 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.085 0.915 27 H 0.158 0.842 28 H 0.160 0.840 29 H 0.161 0.839 30 H 0.234 0.766 31 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 7.361 -16.871 1.896 18.505 hybrid contribution 0.107 1.092 0.295 1.136 sum 7.468 -15.779 2.191 17.594 Atomic orbital electron populations 1.70082 1.07657 1.27698 1.51793 1.25921 0.95730 1.03130 0.94817 0.85515 0.78701 0.78786 0.78472 1.19873 1.20661 1.18944 1.21709 0.93394 0.92642 1.50362 0.92650 1.19040 0.94410 0.92855 0.95048 1.21390 0.97756 0.93065 1.00305 1.20401 0.95962 0.91384 1.02534 1.19673 1.03519 1.00719 0.92617 1.20984 0.95646 0.94077 0.97653 1.20929 1.01272 1.00030 0.97291 1.20661 0.94965 0.92087 0.94967 1.98346 1.60366 1.46743 1.98964 1.20472 1.03730 0.99941 0.98097 1.17541 0.92234 0.91278 0.86964 1.42601 1.52393 1.40218 1.05361 0.92792 0.98951 0.98518 0.93362 0.93715 0.91197 0.91549 0.84209 0.83956 0.83924 0.76603 0.76200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.25 13.29 21.45 0.28 -55.97 16 2 C 0.00 0.10 5.46 84.65 0.46 0.56 16 3 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 7 C -0.54 -30.83 9.11 25.60 0.23 -30.59 16 8 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 9 C 0.02 1.21 4.97 29.85 0.15 1.36 16 10 C -0.09 -3.50 5.13 30.59 0.16 -3.35 16 11 C -0.07 -2.11 4.78 29.85 0.14 -1.97 16 12 C -0.16 -4.58 5.15 -19.73 -0.10 -4.68 16 13 C -0.06 -1.68 9.67 22.25 0.22 -1.46 16 14 C -0.17 -4.14 9.83 22.32 0.22 -3.92 16 15 C 0.00 0.01 6.32 22.30 0.14 0.15 16 16 Cl -0.07 -1.53 28.95 -2.72 -0.08 -1.61 16 17 C -0.20 -4.71 9.68 22.42 0.22 -4.50 16 18 C 0.23 5.90 6.73 38.21 0.26 6.15 16 19 N -0.87 -19.31 8.99 -51.38 -0.46 -19.77 16 20 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 21 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 22 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 23 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 25 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 26 H 0.07 2.06 6.81 -2.39 -0.02 2.04 16 27 H 0.14 3.24 8.06 -2.91 -0.02 3.22 16 28 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 29 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 30 H 0.40 9.69 6.94 -92.71 -0.64 9.04 16 31 H 0.41 6.83 8.84 -92.71 -0.82 6.01 16 Total: -1.00 -63.02 282.36 3.54 -59.47 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: -0.32 Total: 13.95 kcal Atomic # 6 Polarization: -44.34 SS G_CDS: 2.09 Total: -42.24 kcal Atomic # 7 Polarization: -75.56 SS G_CDS: -0.18 Total: -75.74 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -63.02 3.54 -59.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250066375.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.232 kcal (2) G-P(sol) polarization free energy of solvation -63.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds