Wall clock time and date at job start Sun Mar 29 2020 22:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46781 * 2 1 4 4 H 1.09002 * 109.47477 * 54.99920 * 3 2 1 5 5 C 1.50699 * 109.47029 * 175.00002 * 3 2 1 6 6 H 1.08003 * 120.00016 * 120.00427 * 5 3 2 7 7 C 1.37875 * 119.99999 * 299.99395 * 5 3 2 8 8 N 1.31510 * 120.00111 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99789 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47428 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47053 * 120.00579 * 9 7 5 12 12 H 1.48511 * 109.46948 * 240.00187 * 9 7 5 13 13 N 1.46497 * 109.47005 * 294.99765 * 3 2 1 14 14 C 1.30424 * 120.00150 * 125.58448 * 13 3 2 15 15 N 1.37959 * 120.00397 * 185.63579 * 14 13 3 16 16 C 1.47565 * 119.99613 * 5.35186 * 14 13 3 17 17 N 1.30445 * 125.54671 * 265.06573 * 16 14 13 18 18 C 1.31004 * 115.84999 * 179.97438 * 17 16 14 19 19 C 1.33916 * 115.79677 * 359.97438 * 18 17 16 20 20 S 1.71071 * 109.13188 * 359.75290 * 19 18 17 21 21 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47583 * 299.99590 * 1 2 3 23 23 H 1.09001 * 109.47213 * 60.00523 * 1 2 3 24 24 H 1.08996 * 109.47583 * 240.00410 * 2 1 3 25 25 H 1.09001 * 109.47213 * 119.99477 * 2 1 3 26 26 H 0.97000 * 120.00002 * 180.02562 * 8 7 5 27 27 H 0.96993 * 120.00372 * 179.72464 * 15 14 13 28 28 H 0.97003 * 119.99073 * 359.71414 * 15 14 13 29 29 H 1.07996 * 122.09831 * 179.97438 * 18 17 16 30 30 H 1.08003 * 125.43778 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8787 1.2280 8 7 3.4062 0.3369 2.1729 9 14 6.0049 0.8816 1.3818 10 1 6.5986 1.5476 0.1947 11 1 6.3989 1.6171 2.6102 12 1 6.4971 -0.5172 1.4630 13 7 1.6523 2.0975 -1.2518 14 6 0.9887 3.2198 -1.2224 15 7 0.5228 3.7768 -2.3954 16 6 0.7308 3.8908 0.0664 17 7 -0.3513 3.7646 0.7839 18 6 -0.3794 4.4492 1.9004 19 6 0.7072 5.1883 2.1583 20 16 1.8373 4.9853 0.8902 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8293 -0.0608 2.9499 27 1 0.0258 4.6094 -2.3731 28 1 0.6924 3.3356 -3.2425 29 1 -1.2256 4.4195 2.5707 30 1 0.8494 5.8097 3.0302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156815.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:23 Heat of formation + Delta-G solvation = 63.523164 kcal Electronic energy + Delta-G solvation = -15093.753036 eV Core-core repulsion = 12630.091693 eV Total energy + Delta-G solvation = -2463.661343 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27032 -36.63656 -34.32731 -31.76409 -30.41645 -29.60059 -26.71564 -25.28124 -23.03933 -21.21651 -20.01297 -18.66099 -17.46784 -16.45623 -16.20401 -15.51869 -14.83792 -14.42787 -13.63271 -13.50841 -13.37659 -12.86499 -12.34515 -11.90569 -11.44790 -11.16986 -11.09021 -10.85244 -10.70595 -10.19767 -9.81826 -9.61978 -9.45875 -9.26414 -9.09808 -8.60540 -8.29961 -8.00329 -7.37500 -5.99561 -4.06105 1.00553 1.64028 2.17806 3.18299 3.28922 3.33696 3.37560 3.43654 4.18800 4.45131 4.78277 5.29402 5.42144 5.45237 5.80015 6.30810 6.40807 6.45711 6.56130 6.65709 7.10416 7.17327 7.44081 7.59337 7.80636 7.97490 8.00065 8.05869 8.19271 8.41546 8.92842 9.23322 9.59942 11.04946 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.010335 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.593110 B = 2708.707854 C = 3137.904021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.217 3.783 4 H 0.014 0.986 5 C -0.502 4.502 6 H 0.060 0.940 7 C 0.061 3.939 8 N -0.889 5.889 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.283 1.283 13 N -0.531 5.531 14 C 0.427 3.573 15 N -0.851 5.851 16 C 0.070 3.930 17 N -0.444 5.444 18 C 0.028 3.972 19 C -0.296 4.296 20 S 0.183 5.817 21 H 0.031 0.969 22 H 0.040 0.960 23 H 0.038 0.962 24 H 0.039 0.961 25 H 0.096 0.904 26 H 0.260 0.740 27 H 0.396 0.604 28 H 0.404 0.596 29 H 0.167 0.833 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 9.647 -2.370 11.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C 0.108 3.892 4 H 0.032 0.968 5 C -0.541 4.541 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.210 1.210 12 H -0.209 1.209 13 N -0.255 5.255 14 C 0.140 3.860 15 N -0.404 5.404 16 C -0.210 4.210 17 N -0.159 5.159 18 C -0.128 4.128 19 C -0.437 4.437 20 S 0.438 5.562 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.115 0.885 26 H 0.070 0.930 27 H 0.223 0.777 28 H 0.234 0.766 29 H 0.184 0.816 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.498 8.850 -2.983 10.366 hybrid contribution -0.074 0.443 1.513 1.579 sum -4.572 9.293 -1.470 10.461 Atomic orbital electron populations 1.21770 0.99119 0.98870 1.00189 1.21521 0.91749 0.98651 1.02436 1.19312 0.95266 0.91211 0.83392 0.96845 1.21153 0.90467 1.37455 1.05011 0.92175 1.24918 0.98230 0.95242 0.95609 1.69904 1.34732 1.38680 1.09508 0.86499 0.85561 0.77808 0.77974 1.19652 1.21042 1.20901 1.71989 1.12814 1.06599 1.34055 1.19040 0.94212 0.90963 0.81783 1.41683 1.63988 1.29047 1.05640 1.27106 0.92456 1.00646 1.00750 1.67002 1.23084 1.20299 1.05489 1.21593 0.99568 0.96236 0.95376 1.26410 0.99487 1.10433 1.07340 1.84008 1.20269 1.39248 1.12705 0.95004 0.94116 0.94238 0.94205 0.88540 0.92967 0.77673 0.76578 0.81559 0.80953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.80 37.16 0.36 -2.86 16 2 C -0.10 -2.71 5.45 -26.73 -0.15 -2.86 16 3 C 0.22 5.73 2.15 -69.08 -0.15 5.58 16 4 H 0.01 0.39 6.18 -51.93 -0.32 0.07 16 5 C -0.50 -14.18 8.84 -34.44 -0.30 -14.49 16 6 H 0.06 1.73 7.81 -52.48 -0.41 1.32 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.62 16 8 N -0.89 -25.59 11.29 55.43 0.63 -24.97 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 N -0.53 -12.49 9.66 -53.21 -0.51 -13.00 16 14 C 0.43 8.49 7.97 -154.22 -1.23 7.26 16 15 N -0.85 -12.51 9.03 32.42 0.29 -12.22 16 16 C 0.07 1.37 4.96 -14.34 -0.07 1.29 16 17 N -0.44 -8.58 10.66 -11.45 -0.12 -8.71 16 18 C 0.03 0.47 11.24 -19.42 -0.22 0.25 16 19 C -0.30 -4.52 11.07 29.21 0.32 -4.20 16 20 S 0.18 3.16 23.20 -107.50 -2.49 0.67 16 21 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 22 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 23 H 0.04 0.87 7.75 -51.93 -0.40 0.47 16 24 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 25 H 0.10 2.71 5.95 -51.93 -0.31 2.40 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.40 4.65 8.86 -40.82 -0.36 4.29 16 28 H 0.40 5.35 8.95 -40.82 -0.37 4.98 16 29 H 0.17 2.21 8.06 -52.49 -0.42 1.79 16 30 H 0.17 2.05 8.06 -52.48 -0.42 1.62 16 LS Contribution 275.83 15.07 4.16 4.16 Total: -1.00 -31.66 275.83 -8.02 -39.67 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: -3.42 Total: 6.25 kcal Atomic # 6 Polarization: -6.87 SS G_CDS: -1.52 Total: -8.39 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 0.28 Total: -58.89 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 3.16 SS G_CDS: -2.49 Total: 0.67 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -31.66 -8.02 -39.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156815.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.198 kcal (2) G-P(sol) polarization free energy of solvation -31.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds