Wall clock time and date at job start Sun Mar 29 2020 22:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46781 * 2 1 4 4 H 1.09002 * 109.47477 * 54.99920 * 3 2 1 5 5 C 1.50699 * 109.47029 * 175.00002 * 3 2 1 6 6 H 1.08003 * 120.00016 * 120.00427 * 5 3 2 7 7 C 1.37875 * 119.99999 * 299.99395 * 5 3 2 8 8 N 1.31510 * 120.00111 * 0.02562 * 7 5 3 9 9 Si 1.86805 * 119.99789 * 180.02562 * 7 5 3 10 10 H 1.48497 * 109.47428 * 0.02562 * 9 7 5 11 11 H 1.48496 * 109.47053 * 120.00579 * 9 7 5 12 12 H 1.48511 * 109.46948 * 240.00187 * 9 7 5 13 13 N 1.46497 * 109.47005 * 294.99765 * 3 2 1 14 14 C 1.30424 * 120.00150 * 125.58448 * 13 3 2 15 15 N 1.37959 * 120.00397 * 185.63579 * 14 13 3 16 16 C 1.47565 * 119.99613 * 5.35186 * 14 13 3 17 17 N 1.30445 * 125.54671 * 265.06573 * 16 14 13 18 18 C 1.31004 * 115.84999 * 179.97438 * 17 16 14 19 19 C 1.33916 * 115.79677 * 359.97438 * 18 17 16 20 20 S 1.71071 * 109.13188 * 359.75290 * 19 18 17 21 21 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47583 * 299.99590 * 1 2 3 23 23 H 1.09001 * 109.47213 * 60.00523 * 1 2 3 24 24 H 1.08996 * 109.47583 * 240.00410 * 2 1 3 25 25 H 1.09001 * 109.47213 * 119.99477 * 2 1 3 26 26 H 0.97000 * 120.00002 * 180.02562 * 8 7 5 27 27 H 0.96993 * 120.00372 * 179.72464 * 15 14 13 28 28 H 0.97003 * 119.99073 * 359.71414 * 15 14 13 29 29 H 1.07996 * 122.09831 * 179.97438 * 18 17 16 30 30 H 1.08003 * 125.43778 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1471 1.8891 -0.6523 7 6 4.1432 0.8787 1.2280 8 7 3.4062 0.3369 2.1729 9 14 6.0049 0.8816 1.3818 10 1 6.5986 1.5476 0.1947 11 1 6.3989 1.6171 2.6102 12 1 6.4971 -0.5172 1.4630 13 7 1.6523 2.0975 -1.2518 14 6 0.9887 3.2198 -1.2224 15 7 0.5228 3.7768 -2.3954 16 6 0.7308 3.8908 0.0664 17 7 -0.3513 3.7646 0.7839 18 6 -0.3794 4.4492 1.9004 19 6 0.7072 5.1883 2.1583 20 16 1.8373 4.9853 0.8902 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.8934 -0.5137 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 3.8293 -0.0608 2.9499 27 1 0.0258 4.6094 -2.3731 28 1 0.6924 3.3356 -3.2425 29 1 -1.2256 4.4195 2.5707 30 1 0.8494 5.8097 3.0302 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156815.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:23 Heat of formation + Delta-G solvation = 40.435061 kcal Electronic energy + Delta-G solvation = -15094.754211 eV Core-core repulsion = 12630.091693 eV Total energy + Delta-G solvation = -2464.662518 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.65186 -38.26915 -36.10859 -33.74776 -32.04244 -31.01585 -28.66613 -26.72464 -24.99741 -22.74861 -21.74609 -20.09182 -19.04766 -18.27826 -17.86229 -16.99104 -16.52274 -16.08536 -15.17796 -15.05953 -14.90233 -14.49331 -14.15738 -13.78463 -13.15146 -13.07368 -12.74544 -12.57563 -12.39051 -12.13932 -11.75645 -11.62547 -11.12945 -10.90401 -10.61624 -10.48931 -9.85724 -9.66138 -8.98230 -8.08461 -6.23743 -0.34757 0.25741 0.86388 1.38411 1.40524 1.52300 1.78296 1.88004 2.41889 2.82212 3.15426 3.37775 4.09717 4.33818 4.46402 4.53838 4.59035 4.73506 4.91725 5.12483 5.23107 5.23577 5.47013 5.59868 5.73976 6.02406 6.31851 6.60415 6.66827 6.70858 6.89009 7.40562 7.70298 8.93860 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.020897 B = 0.010335 C = 0.008921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.593110 B = 2708.707854 C = 3137.904021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.230 3.770 4 H -0.011 1.011 5 C -0.519 4.519 6 H 0.045 0.955 7 C 0.019 3.981 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.270 1.270 11 H -0.276 1.276 12 H -0.278 1.278 13 N -0.575 5.575 14 C 0.443 3.557 15 N -0.826 5.826 16 C 0.034 3.966 17 N -0.461 5.461 18 C 0.009 3.991 19 C -0.275 4.275 20 S 0.181 5.819 21 H 0.053 0.947 22 H 0.028 0.972 23 H 0.042 0.958 24 H 0.029 0.971 25 H 0.069 0.931 26 H 0.262 0.738 27 H 0.413 0.587 28 H 0.413 0.587 29 H 0.197 0.803 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.810 10.905 -2.085 12.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.142 4.142 3 C 0.120 3.880 4 H 0.006 0.994 5 C -0.558 4.558 6 H 0.064 0.936 7 C -0.181 4.181 8 N -0.554 5.554 9 Si 0.779 3.221 10 H -0.194 1.194 11 H -0.201 1.201 12 H -0.204 1.204 13 N -0.302 5.302 14 C 0.156 3.844 15 N -0.380 5.380 16 C -0.244 4.244 17 N -0.176 5.176 18 C -0.145 4.145 19 C -0.415 4.415 20 S 0.435 5.565 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.061 0.939 24 H 0.048 0.952 25 H 0.088 0.912 26 H 0.072 0.928 27 H 0.244 0.756 28 H 0.245 0.755 29 H 0.214 0.786 30 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -4.790 10.148 -2.737 11.551 hybrid contribution -0.083 0.196 1.433 1.448 sum -4.873 10.345 -1.305 11.509 Atomic orbital electron populations 1.21568 0.96802 1.00153 0.99652 1.21406 0.93807 0.98581 1.00453 1.18946 0.93940 0.91156 0.83964 0.99355 1.21370 0.91949 1.37612 1.04844 0.93635 1.25634 1.02408 0.94784 0.95226 1.70021 1.36353 1.39134 1.09876 0.85577 0.80495 0.77955 0.78107 1.19419 1.20124 1.20418 1.71923 1.17075 1.09057 1.32146 1.19312 0.91866 0.89836 0.83379 1.41646 1.62434 1.29240 1.04648 1.27015 0.93569 1.02561 1.01287 1.66971 1.23437 1.20728 1.06499 1.22093 1.01085 0.96206 0.95164 1.26861 0.97824 1.09541 1.07271 1.83975 1.20521 1.38477 1.13540 0.92754 0.95252 0.93928 0.95210 0.91215 0.92843 0.75644 0.75478 0.78585 0.77176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.63 9.80 71.98 0.71 -4.93 16 2 C -0.10 -5.47 5.45 30.59 0.17 -5.30 16 3 C 0.23 12.35 2.15 44.25 0.10 12.44 16 4 H -0.01 -0.64 6.18 -2.39 -0.01 -0.65 16 5 C -0.52 -29.87 8.84 25.60 0.23 -29.65 16 6 H 0.05 2.68 7.81 -2.91 -0.02 2.65 16 7 C 0.02 1.05 5.29 84.65 0.45 1.49 16 8 N -0.91 -53.31 11.29 21.45 0.24 -53.06 16 9 Si 0.95 44.35 29.54 68.60 2.03 46.38 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 N -0.58 -27.30 9.66 -322.26 -3.11 -30.42 16 14 C 0.44 17.41 7.97 136.24 1.09 18.49 16 15 N -0.83 -23.11 9.03 -51.34 -0.46 -23.57 16 16 C 0.03 1.31 4.96 87.36 0.43 1.75 16 17 N -0.46 -17.32 10.66 -190.12 -2.03 -19.35 16 18 C 0.01 0.29 11.24 83.83 0.94 1.23 16 19 C -0.27 -7.66 11.07 66.84 0.74 -6.92 16 20 S 0.18 6.04 23.20 -56.49 -1.31 4.73 16 21 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 22 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 23 H 0.04 1.87 7.75 -2.39 -0.02 1.85 16 24 H 0.03 1.56 8.14 -2.39 -0.02 1.55 16 25 H 0.07 4.02 5.95 -2.39 -0.01 4.01 16 26 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 27 H 0.41 8.89 8.86 -92.71 -0.82 8.07 16 28 H 0.41 10.31 8.95 -92.71 -0.83 9.48 16 29 H 0.20 4.66 8.06 -2.91 -0.02 4.63 16 30 H 0.21 4.12 8.06 -2.91 -0.02 4.09 16 Total: -1.00 -68.82 275.83 -0.28 -69.10 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -0.48 Total: 17.58 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: 4.84 Total: -11.39 kcal Atomic # 7 Polarization: -121.04 SS G_CDS: -5.36 Total: -126.40 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 6.04 SS G_CDS: -1.31 Total: 4.73 kcal Total: -68.82 -0.28 -69.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156815.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.536 kcal (2) G-P(sol) polarization free energy of solvation -68.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.101 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds