Wall clock time and date at job start Sun Mar 29 2020 22:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48507 * 109.46800 * 269.99448 * 3 2 1 5 5 H 1.48491 * 109.47568 * 29.99900 * 3 2 1 6 6 H 1.48504 * 109.47274 * 150.00188 * 3 2 1 7 7 C 1.38950 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99390 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00365 * 180.02562 * 7 2 1 10 10 C 1.34770 * 120.00033 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00526 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99928 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47046 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99592 * 179.97438 * 13 12 10 15 15 O 1.21546 * 120.00331 * 359.97438 * 14 13 12 16 16 C 1.47871 * 119.99736 * 179.97438 * 14 13 12 17 17 N 1.34549 * 126.05131 * 179.97438 * 16 14 13 18 18 C 1.30862 * 107.27315 * 180.02562 * 17 16 14 19 19 N 1.34584 * 107.62652 * 0.02562 * 18 17 16 20 20 H 0.97000 * 125.75481 * 179.73959 * 19 18 17 21 21 N 1.28852 * 108.50061 * 359.97438 * 19 18 17 22 22 H 0.96999 * 119.99754 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99849 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.46962 * 59.99342 * 12 10 9 25 25 H 1.09001 * 109.46961 * 299.99746 * 12 10 9 26 26 H 0.97001 * 120.00109 * 359.97438 * 13 12 10 27 27 H 1.07997 * 126.19071 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0490 -3.7519 0.0026 14 6 7.3741 -3.9981 0.0031 15 8 8.1639 -3.0743 0.0028 16 6 7.8669 -5.3923 0.0041 17 7 9.1565 -5.7762 0.0042 18 6 9.1723 -7.0848 0.0046 19 7 7.8946 -7.5078 0.0042 20 1 7.6040 -8.4332 0.0007 21 7 7.1224 -6.4763 0.0041 22 1 -0.4850 0.8401 -0.0004 23 1 3.8648 -0.3633 0.0014 24 1 5.9233 -1.8571 0.8926 25 1 5.9247 -1.8564 -0.8873 26 1 5.4186 -4.4891 0.0025 27 1 10.0515 -7.7119 0.0044 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001258172160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:11 Heat of formation + Delta-G solvation = 24.153310 kcal Electronic energy + Delta-G solvation = -15965.186564 eV Core-core repulsion = 12953.524801 eV Total energy + Delta-G solvation = -3011.661762 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.080 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.65316 -39.50740 -38.21985 -34.59939 -33.83065 -33.57564 -31.86025 -31.66525 -28.15290 -25.04735 -23.73337 -22.96254 -20.37404 -19.69079 -19.15680 -18.53588 -17.43721 -16.54907 -15.86540 -15.55227 -15.21998 -14.91944 -14.74490 -13.92452 -13.85355 -13.11996 -12.51124 -12.37780 -12.17234 -12.13100 -11.22716 -10.91698 -10.69985 -10.63082 -10.20393 -10.04902 -9.94501 -9.68976 -8.95490 -8.77178 -8.29717 -6.39808 -3.92413 1.20528 1.96415 2.39199 2.93760 3.01012 3.05772 3.14058 3.36179 3.57359 4.04614 4.15398 4.26351 4.53375 4.76936 5.14793 5.62754 5.73360 5.79227 5.79552 6.03637 6.43548 6.47805 7.43461 7.52521 7.86982 8.00919 8.24790 8.46117 8.82566 9.30486 9.63927 10.72286 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.058506 B = 0.004623 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.467889 B = 6055.811060 C = 6519.135225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.045 3.955 3 Si 0.879 3.121 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.266 1.266 7 C -0.310 4.310 8 H 0.122 0.878 9 N -0.576 5.576 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.107 3.893 13 N -0.690 5.690 14 C 0.611 3.389 15 O -0.519 6.519 16 C 0.156 3.844 17 N -0.463 5.463 18 C 0.192 3.808 19 N -0.399 5.399 20 H 0.452 0.548 21 N -0.269 5.269 22 H 0.275 0.725 23 H 0.375 0.625 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.420 0.580 27 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.895 -11.671 -0.013 19.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.159 4.159 3 Si 0.705 3.295 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.438 4.438 8 H 0.139 0.861 9 N -0.213 5.213 10 C 0.224 3.776 11 O -0.460 6.460 12 C -0.021 4.021 13 N -0.345 5.345 14 C 0.392 3.608 15 O -0.391 6.391 16 C -0.125 4.125 17 N -0.187 5.187 18 C -0.106 4.106 19 N -0.122 5.122 20 H 0.298 0.702 21 N -0.110 5.110 22 H 0.086 0.914 23 H 0.208 0.792 24 H 0.108 0.892 25 H 0.108 0.892 26 H 0.259 0.741 27 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 15.448 -11.118 -0.011 19.033 hybrid contribution 0.293 0.126 0.014 0.319 sum 15.740 -10.992 0.003 19.198 Atomic orbital electron populations 1.69618 1.05718 1.27809 1.48170 1.25070 0.95545 0.98193 0.97139 0.86665 0.79934 0.83722 0.79149 1.19382 1.20001 1.19164 1.19442 0.78923 0.96816 1.48633 0.86053 1.42105 1.07702 1.06090 1.65449 1.19571 0.87905 0.84959 0.85171 1.90556 1.69098 1.30851 1.55479 1.21067 0.94074 0.83063 1.03863 1.45434 1.06078 1.09948 1.73031 1.16215 0.82504 0.84266 0.77814 1.90817 1.55536 1.43241 1.49531 1.23838 0.87143 0.94337 1.07134 1.71298 1.19813 1.09214 1.18385 1.26738 0.90026 0.92081 1.01730 1.45162 1.05577 1.09746 1.51727 0.70161 1.74386 1.22667 0.94514 1.19431 0.91392 0.79191 0.89168 0.89152 0.74103 0.75321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.98 13.96 55.50 0.77 -24.21 15 2 C 0.04 1.20 5.50 -17.47 -0.10 1.10 15 3 Si 0.88 19.01 27.74 -169.99 -4.71 14.29 15 4 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 5 H -0.27 -5.96 7.11 56.52 0.40 -5.56 15 6 H -0.27 -5.26 6.52 56.52 0.37 -4.89 15 7 C -0.31 -8.54 10.16 -14.93 -0.15 -8.70 15 8 H 0.12 3.81 7.39 -52.48 -0.39 3.42 15 9 N -0.58 -13.40 5.09 -10.96 -0.06 -13.45 15 10 C 0.44 9.71 7.85 -10.98 -0.09 9.62 15 11 O -0.58 -14.72 15.24 5.55 0.08 -14.64 15 12 C 0.11 1.88 6.15 -5.19 -0.03 1.85 15 13 N -0.69 -11.90 5.53 -62.42 -0.34 -12.25 15 14 C 0.61 10.63 7.83 -12.32 -0.10 10.53 15 15 O -0.52 -10.25 17.09 5.33 0.09 -10.16 15 16 C 0.16 2.37 7.96 -156.35 -1.24 1.12 15 17 N -0.46 -6.28 11.41 -12.37 -0.14 -6.42 15 18 C 0.19 1.46 13.14 -90.49 -1.19 0.27 15 19 N -0.40 -2.98 6.93 29.56 0.20 -2.78 15 20 H 0.45 1.25 8.96 -190.21 -1.71 -0.46 15 21 N -0.27 -3.40 11.98 32.07 0.38 -3.01 15 22 H 0.28 7.26 8.31 -40.82 -0.34 6.92 15 23 H 0.37 7.66 5.76 -40.82 -0.24 7.42 15 24 H 0.09 1.45 8.14 -51.93 -0.42 1.03 15 25 H 0.09 1.45 8.14 -51.93 -0.42 1.02 15 26 H 0.42 7.38 7.14 -40.82 -0.29 7.09 15 27 H 0.23 0.41 8.06 -52.49 -0.42 -0.02 15 LS Contribution 256.19 15.07 3.86 3.86 Total: -1.00 -36.47 256.19 -5.81 -42.28 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -3.06 Total: 10.68 kcal Atomic # 6 Polarization: 18.70 SS G_CDS: -2.90 Total: 15.81 kcal Atomic # 7 Polarization: -62.94 SS G_CDS: 0.82 Total: -62.12 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: 0.18 Total: -24.80 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.71 Total: 14.29 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -36.47 -5.81 -42.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258172160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.433 kcal (2) G-P(sol) polarization free energy of solvation -36.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.280 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds