Wall clock time and date at job start Sun Mar 29 2020 22:03:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31409 * 1 3 3 Si 1.86800 * 119.99952 * 2 1 4 4 H 1.48507 * 109.46800 * 269.99448 * 3 2 1 5 5 H 1.48491 * 109.47568 * 29.99900 * 3 2 1 6 6 H 1.48504 * 109.47274 * 150.00188 * 3 2 1 7 7 C 1.38950 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99390 * 0.02562 * 7 2 1 9 9 N 1.37095 * 120.00365 * 180.02562 * 7 2 1 10 10 C 1.34770 * 120.00033 * 180.02562 * 9 7 2 11 11 O 1.21289 * 120.00526 * 359.97438 * 10 9 7 12 12 C 1.50708 * 119.99928 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47046 * 179.97438 * 12 10 9 14 14 C 1.34778 * 119.99592 * 179.97438 * 13 12 10 15 15 O 1.21546 * 120.00331 * 359.97438 * 14 13 12 16 16 C 1.47871 * 119.99736 * 179.97438 * 14 13 12 17 17 N 1.34549 * 126.05131 * 179.97438 * 16 14 13 18 18 C 1.30862 * 107.27315 * 180.02562 * 17 16 14 19 19 N 1.34584 * 107.62652 * 0.02562 * 18 17 16 20 20 H 0.97000 * 125.75481 * 179.73959 * 19 18 17 21 21 N 1.28852 * 108.50061 * 359.97438 * 19 18 17 22 22 H 0.96999 * 119.99754 * 0.02562 * 1 2 3 23 23 H 0.97003 * 119.99849 * 0.02562 * 9 7 2 24 24 H 1.08996 * 109.46962 * 59.99342 * 12 10 9 25 25 H 1.09001 * 109.46961 * 299.99746 * 12 10 9 26 26 H 0.97001 * 120.00109 * 359.97438 * 13 12 10 27 27 H 1.07997 * 126.19071 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4002 5 1 1.4456 2.6527 0.7000 6 1 3.5457 1.4402 0.7000 7 6 2.0089 -1.2033 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0011 12 6 5.5607 -2.3706 0.0022 13 7 6.0490 -3.7519 0.0026 14 6 7.3741 -3.9981 0.0031 15 8 8.1639 -3.0743 0.0028 16 6 7.8669 -5.3923 0.0041 17 7 9.1565 -5.7762 0.0042 18 6 9.1723 -7.0848 0.0046 19 7 7.8946 -7.5078 0.0042 20 1 7.6040 -8.4332 0.0007 21 7 7.1224 -6.4763 0.0041 22 1 -0.4850 0.8401 -0.0004 23 1 3.8648 -0.3633 0.0014 24 1 5.9233 -1.8571 0.8926 25 1 5.9247 -1.8564 -0.8873 26 1 5.4186 -4.4891 0.0025 27 1 10.0515 -7.7119 0.0044 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258172160.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:03:10 Heat of formation + Delta-G solvation = -7.238487 kcal Electronic energy + Delta-G solvation = -15966.547814 eV Core-core repulsion = 12953.524801 eV Total energy + Delta-G solvation = -3013.023013 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.080 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.47661 -41.00738 -39.92650 -36.33454 -35.47949 -34.44863 -33.84132 -32.63558 -29.66371 -26.72099 -25.04318 -23.77350 -21.58523 -21.49347 -20.60981 -19.81858 -18.71590 -17.48526 -17.45182 -17.07547 -16.62034 -16.60321 -15.77186 -15.41895 -15.40961 -14.85749 -14.31487 -14.04066 -13.69256 -13.21106 -12.96139 -12.43767 -11.99157 -11.78240 -11.69692 -11.57708 -11.44621 -10.81987 -10.67484 -10.35782 -10.27307 -8.44918 -6.07112 0.22464 1.15692 1.32518 1.35427 1.45034 1.54138 1.78523 1.98647 2.20181 2.21665 2.80525 3.11163 3.19327 3.51997 3.95635 4.07318 4.37512 4.38844 4.86065 5.06524 5.25598 5.48416 5.88052 5.94477 6.26161 6.48616 6.78305 6.85171 7.05150 7.28810 7.77931 8.71407 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.058506 B = 0.004623 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 478.467889 B = 6055.811060 C = 6519.135225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.009 4.009 3 Si 0.960 3.040 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.231 1.231 7 C -0.331 4.331 8 H 0.063 0.937 9 N -0.576 5.576 10 C 0.445 3.555 11 O -0.614 6.614 12 C 0.117 3.883 13 N -0.692 5.692 14 C 0.613 3.387 15 O -0.548 6.548 16 C 0.124 3.876 17 N -0.509 5.509 18 C 0.222 3.778 19 N -0.378 5.378 20 H 0.473 0.527 21 N -0.283 5.283 22 H 0.281 0.719 23 H 0.393 0.607 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.417 0.583 27 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.764 -11.702 0.024 22.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.209 4.209 3 Si 0.779 3.221 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.154 1.154 7 C -0.460 4.460 8 H 0.081 0.919 9 N -0.216 5.216 10 C 0.232 3.768 11 O -0.500 6.500 12 C -0.010 4.010 13 N -0.347 5.347 14 C 0.396 3.604 15 O -0.423 6.423 16 C -0.155 4.155 17 N -0.235 5.235 18 C -0.075 4.075 19 N -0.104 5.104 20 H 0.325 0.675 21 N -0.126 5.126 22 H 0.091 0.909 23 H 0.229 0.771 24 H 0.131 0.869 25 H 0.132 0.868 26 H 0.256 0.744 27 H 0.305 0.695 Dipole moment (debyes) X Y Z Total from point charges 18.329 -11.200 0.027 21.481 hybrid contribution -0.598 -0.134 -0.002 0.613 sum 17.732 -11.334 0.025 21.045 Atomic orbital electron populations 1.69781 1.08049 1.29473 1.49205 1.26086 0.96458 1.02656 0.95676 0.85434 0.79625 0.76903 0.80104 1.18059 1.19852 1.15434 1.19028 0.80922 0.95292 1.50797 0.91869 1.41893 1.06138 1.07360 1.66178 1.20412 0.89871 0.83949 0.82522 1.90543 1.70696 1.32359 1.56358 1.21033 0.89907 0.84003 1.06072 1.45445 1.06316 1.09611 1.73288 1.16467 0.81878 0.85304 0.76724 1.90781 1.56015 1.44534 1.51014 1.23378 0.88236 0.93720 1.10175 1.71234 1.19400 1.12309 1.20552 1.27761 0.91157 0.90792 0.97752 1.45182 1.05422 1.09884 1.49931 0.67534 1.74286 1.23769 0.95126 1.19430 0.90913 0.77080 0.86890 0.86789 0.74397 0.69530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.52 13.96 21.66 0.30 -54.21 15 2 C -0.01 -0.48 5.50 84.93 0.47 -0.01 15 3 Si 0.96 38.14 27.74 68.60 1.90 40.04 15 4 H -0.26 -9.70 7.11 99.48 0.71 -8.99 15 5 H -0.27 -10.80 7.11 99.48 0.71 -10.10 15 6 H -0.23 -7.81 6.52 99.48 0.65 -7.16 15 7 C -0.33 -18.90 10.16 84.04 0.85 -18.05 15 8 H 0.06 4.26 7.39 -2.91 -0.02 4.24 15 9 N -0.58 -26.59 5.09 -306.99 -1.56 -28.16 15 10 C 0.45 19.71 7.85 87.66 0.69 20.40 15 11 O -0.61 -32.34 15.24 -3.06 -0.05 -32.39 15 12 C 0.12 3.94 6.15 85.64 0.53 4.46 15 13 N -0.69 -23.57 5.53 -469.67 -2.60 -26.17 15 14 C 0.61 21.06 7.83 86.79 0.68 21.74 15 15 O -0.55 -21.36 17.09 -3.86 -0.07 -21.42 15 16 C 0.12 3.66 7.96 137.13 1.09 4.75 15 17 N -0.51 -12.89 11.41 -193.04 -2.20 -15.09 15 18 C 0.22 2.58 13.14 180.30 2.37 4.95 15 19 N -0.38 -4.55 6.93 -60.38 -0.42 -4.96 15 20 H 0.47 0.99 8.96 -219.80 -1.97 -0.98 15 21 N -0.28 -6.76 11.98 -52.44 -0.63 -7.39 15 22 H 0.28 15.13 8.31 -92.71 -0.77 14.36 15 23 H 0.39 15.12 5.76 -92.71 -0.53 14.59 15 24 H 0.11 3.37 8.14 -2.39 -0.02 3.35 15 25 H 0.11 3.38 8.14 -2.39 -0.02 3.36 15 26 H 0.42 14.80 7.14 -92.71 -0.66 14.14 15 27 H 0.29 -0.63 8.06 -2.91 -0.02 -0.65 15 Total: -1.00 -84.77 256.19 -0.60 -85.37 By element: Atomic # 1 Polarization: 28.10 SS G_CDS: -1.96 Total: 26.14 kcal Atomic # 6 Polarization: 31.57 SS G_CDS: 6.68 Total: 38.25 kcal Atomic # 7 Polarization: -128.88 SS G_CDS: -7.10 Total: -135.98 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -0.11 Total: -53.81 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -84.77 -0.60 -85.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258172160.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.129 kcal (2) G-P(sol) polarization free energy of solvation -84.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds