Wall clock time and date at job start Sun Mar 29 2020 22:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47415 * 2 1 4 4 C 1.53001 * 109.47030 * 120.00480 * 2 1 3 5 5 C 1.50699 * 109.47076 * 185.00326 * 4 2 1 6 6 C 1.38264 * 119.99683 * 89.99539 * 5 4 2 7 7 C 1.38220 * 120.02583 * 179.97438 * 6 5 4 8 8 C 1.38232 * 120.01498 * 0.02562 * 7 6 5 9 9 C 1.38335 * 119.98779 * 359.97438 * 8 7 6 10 10 Cl 1.73595 * 120.01468 * 179.72696 * 9 8 7 11 11 C 1.38189 * 119.99118 * 269.99129 * 5 4 2 12 12 N 1.46502 * 109.47456 * 239.99850 * 2 1 3 13 13 C 1.36938 * 119.99763 * 84.99721 * 12 2 1 14 14 H 1.08001 * 120.00380 * 0.02562 * 13 12 2 15 15 C 1.38818 * 119.99830 * 180.02562 * 13 12 2 16 16 N 1.31622 * 120.00145 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 119.99721 * 180.02562 * 15 13 12 18 18 H 1.48506 * 109.47208 * 90.00376 * 17 15 13 19 19 H 1.48506 * 109.47304 * 209.99828 * 17 15 13 20 20 H 1.48499 * 109.47508 * 330.00345 * 17 15 13 21 21 H 1.09002 * 109.46989 * 179.97438 * 1 2 3 22 22 H 1.08989 * 109.47153 * 300.00156 * 1 2 3 23 23 H 1.09001 * 109.46775 * 60.00179 * 1 2 3 24 24 H 1.08997 * 109.47749 * 64.99853 * 4 2 1 25 25 H 1.09003 * 109.46923 * 304.99775 * 4 2 1 26 26 H 1.08000 * 119.98449 * 0.02562 * 6 5 4 27 27 H 1.08002 * 119.99055 * 179.97438 * 7 6 5 28 28 H 1.08002 * 120.00683 * 180.02562 * 8 7 6 29 29 H 1.08001 * 120.01014 * 359.97438 * 11 5 4 30 30 H 0.96997 * 120.00240 * 265.00534 * 12 2 1 31 31 H 0.96993 * 119.99657 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5418 -0.6150 1.3127 6 6 4.1323 0.4495 1.9685 7 6 5.5098 0.5474 2.0276 8 6 6.2979 -0.4187 1.4306 9 6 5.7078 -1.4839 0.7744 10 17 6.6968 -2.6938 0.0184 11 6 4.3287 -1.5814 0.7156 12 7 2.0184 -0.6906 -1.1961 13 6 2.1492 -0.0075 -2.3757 14 1 1.8926 1.0405 -2.4242 15 6 2.6114 -0.6620 -3.5093 16 7 2.9236 -1.9393 -3.4504 17 14 2.7905 0.2700 -5.1181 18 1 4.1532 0.8542 -5.2029 19 1 2.5795 -0.6609 -6.2558 20 1 1.7812 1.3579 -5.1750 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 1.7516 -1.7716 1.2056 25 1 1.6053 -0.2619 2.1370 26 1 3.5169 1.2043 2.4354 27 1 5.9704 1.3793 2.5396 28 1 7.3742 -0.3423 1.4772 29 1 3.8674 -2.4131 0.2039 30 1 2.2491 -1.6318 -1.1526 31 1 3.2463 -2.3967 -4.2425 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258737014.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:34:47 Heat of formation + Delta-G solvation = -1.757637 kcal Electronic energy + Delta-G solvation = -14776.489521 eV Core-core repulsion = 12275.660932 eV Total energy + Delta-G solvation = -2500.828588 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.077 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.34466 -37.76354 -37.11426 -34.47341 -32.38959 -31.56895 -30.32757 -27.35006 -25.67702 -23.50939 -22.63170 -21.24764 -19.20151 -17.79967 -16.85767 -16.37485 -16.27554 -15.45293 -15.40093 -14.81475 -14.47986 -14.32389 -13.74754 -13.51800 -13.13609 -12.83742 -12.80366 -12.60565 -12.33781 -12.20832 -12.15090 -12.05290 -11.69913 -11.60609 -11.48106 -10.90276 -9.67853 -9.48623 -8.91119 -7.87681 -5.13167 0.32660 0.47079 1.26774 1.45874 1.46955 1.54536 2.58944 2.79697 3.46169 3.85972 3.94575 4.04483 4.24405 4.33083 4.46894 4.55492 4.60869 4.77271 4.77998 4.99473 5.07090 5.07936 5.18238 5.37811 5.40962 5.47746 5.56357 5.62778 5.74822 6.03209 6.34338 7.40996 8.19810 8.41611 9.35324 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.017877 B = 0.009410 C = 0.007111 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1565.915020 B = 2974.945980 C = 3936.760495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.169 3.831 3 H 0.044 0.956 4 C -0.080 4.080 5 C -0.063 4.063 6 C -0.118 4.118 7 C -0.106 4.106 8 C -0.129 4.129 9 C -0.049 4.049 10 Cl -0.088 7.088 11 C -0.106 4.106 12 N -0.731 5.731 13 C -0.227 4.227 14 H 0.071 0.929 15 C -0.073 4.073 16 N -0.964 5.964 17 Si 0.959 3.041 18 H -0.293 1.293 19 H -0.299 1.299 20 H -0.270 1.270 21 H 0.041 0.959 22 H 0.076 0.924 23 H 0.032 0.968 24 H 0.065 0.935 25 H 0.110 0.890 26 H 0.154 0.846 27 H 0.164 0.836 28 H 0.145 0.855 29 H 0.105 0.895 30 H 0.371 0.629 31 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.067 4.460 14.105 15.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.061 3.939 3 H 0.062 0.938 4 C -0.117 4.117 5 C -0.063 4.063 6 C -0.136 4.136 7 C -0.124 4.124 8 C -0.148 4.148 9 C -0.075 4.075 10 Cl -0.059 7.059 11 C -0.125 4.125 12 N -0.371 5.371 13 C -0.360 4.360 14 H 0.088 0.912 15 C -0.266 4.266 16 N -0.615 5.615 17 Si 0.790 3.210 18 H -0.221 1.221 19 H -0.226 1.226 20 H -0.195 1.195 21 H 0.061 0.939 22 H 0.095 0.905 23 H 0.052 0.948 24 H 0.083 0.917 25 H 0.128 0.872 26 H 0.172 0.828 27 H 0.181 0.819 28 H 0.163 0.837 29 H 0.123 0.877 30 H 0.203 0.797 31 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.137 4.505 13.923 14.966 hybrid contribution 0.371 -0.535 -1.629 1.755 sum 3.508 3.969 12.294 13.386 Atomic orbital electron populations 1.22300 0.97443 1.00893 1.00891 1.20473 0.92677 0.95106 0.85629 0.93835 1.20929 0.90121 1.01693 0.98993 1.19950 0.96321 0.94085 0.95965 1.21453 0.95576 0.97441 0.99097 1.21418 0.93436 0.98664 0.98910 1.21249 1.01410 0.93347 0.98758 1.21114 0.91655 0.93716 1.01051 1.98337 1.70139 1.56135 1.81327 1.20924 0.91943 1.00539 0.99138 1.42599 1.78246 1.10171 1.06113 1.19516 1.34208 0.93860 0.88395 0.91153 1.25377 1.03540 0.96773 1.00890 1.69797 1.52912 1.09903 1.28900 0.85341 0.77624 0.77622 0.80446 1.22069 1.22572 1.19509 0.93937 0.90507 0.94833 0.91676 0.87160 0.82825 0.81892 0.83709 0.87697 0.79656 0.94496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.14 9.49 71.98 0.68 -4.46 16 2 C 0.17 6.29 2.88 44.99 0.13 6.42 16 3 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 4 C -0.08 -2.38 4.89 29.85 0.15 -2.24 16 5 C -0.06 -2.02 4.95 -19.87 -0.10 -2.11 16 6 C -0.12 -3.05 9.70 22.27 0.22 -2.83 16 7 C -0.11 -2.55 10.05 22.26 0.22 -2.32 16 8 C -0.13 -3.63 9.83 22.29 0.22 -3.41 16 9 C -0.05 -1.70 6.32 22.33 0.14 -1.56 16 10 Cl -0.09 -3.06 28.96 -2.72 -0.08 -3.14 16 11 C -0.11 -3.98 8.88 22.29 0.20 -3.78 16 12 N -0.73 -35.91 4.57 -322.94 -1.48 -37.39 16 13 C -0.23 -12.58 9.93 84.03 0.83 -11.75 16 14 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 15 C -0.07 -4.26 5.50 84.86 0.47 -3.79 16 16 N -0.96 -59.58 13.06 21.65 0.28 -59.29 16 17 Si 0.96 47.21 29.55 68.60 2.03 49.24 16 18 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 19 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 23 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.06 2.03 8.08 -2.39 -0.02 2.01 16 25 H 0.11 2.42 8.09 -2.39 -0.02 2.41 16 26 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.16 2.61 8.06 -2.91 -0.02 2.59 16 28 H 0.15 3.37 8.06 -2.91 -0.02 3.35 16 29 H 0.10 4.42 7.57 -2.91 -0.02 4.40 16 30 H 0.37 19.80 7.02 -92.71 -0.65 19.15 16 31 H 0.25 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -65.55 283.46 4.38 -61.17 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.47 Total: 21.25 kcal Atomic # 6 Polarization: -35.00 SS G_CDS: 3.16 Total: -31.84 kcal Atomic # 7 Polarization: -95.49 SS G_CDS: -1.19 Total: -96.68 kcal Atomic # 14 Polarization: 47.21 SS G_CDS: 2.03 Total: 49.24 kcal Atomic # 17 Polarization: -3.06 SS G_CDS: -0.08 Total: -3.14 kcal Total: -65.55 4.38 -61.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258737014.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -65.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds