Wall clock time and date at job start Sun Mar 29 2020 21:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48496 * 109.46681 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47048 * 299.99727 * 3 2 1 6 6 H 1.48501 * 109.47100 * 60.00176 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 C 1.50696 * 109.47259 * 179.72770 * 12 10 9 14 14 C 1.39008 * 120.84900 * 269.71598 * 13 12 10 15 15 O 1.35543 * 120.47366 * 0.02562 * 14 13 12 16 16 N 1.32964 * 119.05145 * 179.76608 * 14 13 12 17 17 C 1.31759 * 120.86242 * 0.52413 * 16 14 13 18 18 N 1.31757 * 121.87241 * 359.73028 * 17 16 14 19 19 C 1.32970 * 120.86326 * 359.97438 * 18 17 16 20 20 O 1.35540 * 120.47632 * 179.97438 * 19 18 17 21 21 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 22 22 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 24 24 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 25 25 H 0.96707 * 114.00041 * 89.99971 * 15 14 13 26 26 H 1.07996 * 119.06694 * 179.70469 * 17 16 14 27 27 H 0.96695 * 114.00392 * 270.02698 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3463 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 6 2.2227 -6.0084 -0.0047 14 6 2.6761 -6.5515 -1.2013 15 8 2.2440 -6.0580 -2.3875 16 7 3.5436 -7.5585 -1.1657 17 6 3.9647 -8.0475 -0.0170 18 7 3.5544 -7.5633 1.1376 19 6 2.6917 -6.5525 1.1855 20 8 2.2743 -6.0608 2.3776 21 1 -0.4850 0.8401 -0.0004 22 1 0.3532 -2.3906 0.0016 23 1 0.6209 -4.9225 0.8949 24 1 0.6128 -4.9187 -0.8850 25 1 2.7903 -5.3410 -2.7377 26 1 4.6659 -8.8689 -0.0219 27 1 1.4816 -6.4919 2.7251 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001292650913.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:15 Heat of formation + Delta-G solvation = -68.314261 kcal Electronic energy + Delta-G solvation = -16672.794074 eV Core-core repulsion = 13624.829866 eV Total energy + Delta-G solvation = -3047.964208 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.23258 -38.24365 -38.03128 -36.91958 -34.10932 -32.56331 -32.42896 -31.27878 -27.95814 -24.96543 -23.79202 -23.00811 -19.60087 -19.35748 -18.41714 -17.97951 -17.68559 -16.06717 -15.78081 -15.24263 -14.71412 -14.43178 -14.31606 -13.88804 -13.56331 -13.34003 -12.53050 -12.49814 -11.68851 -11.61724 -11.50991 -11.10295 -10.45502 -10.38877 -10.27124 -10.20853 -9.60859 -9.37334 -9.14308 -8.47459 -8.06132 -6.49284 -3.90580 0.91357 0.95091 3.11487 3.23155 3.30181 3.37089 3.43450 3.76339 3.81906 4.12604 4.36981 4.74945 4.94760 5.06311 5.19822 5.32763 5.35105 5.85871 6.03823 6.12821 6.30355 6.92110 7.39651 7.48436 7.49426 7.96802 8.08364 8.50469 9.09077 9.44110 9.94274 10.68038 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.039708 B = 0.006143 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.986238 B = 4556.762954 C = 4757.270973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.024 3.976 3 Si 0.930 3.070 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.302 4.302 8 H 0.104 0.896 9 N -0.556 5.556 10 C 0.445 3.555 11 O -0.595 6.595 12 C -0.084 4.084 13 C -0.174 4.174 14 C 0.381 3.619 15 O -0.475 6.475 16 N -0.546 5.546 17 C 0.328 3.672 18 N -0.547 5.547 19 C 0.380 3.620 20 O -0.464 6.464 21 H 0.272 0.728 22 H 0.394 0.606 23 H 0.093 0.907 24 H 0.099 0.901 25 H 0.415 0.585 26 H 0.203 0.797 27 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 -11.770 -0.060 11.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.178 4.178 3 Si 0.757 3.243 4 H -0.192 1.192 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.431 4.431 8 H 0.121 0.879 9 N -0.191 5.191 10 C 0.231 3.769 11 O -0.481 6.481 12 C -0.126 4.126 13 C -0.182 4.182 14 C 0.195 3.805 15 O -0.284 6.284 16 N -0.272 5.272 17 C 0.040 3.960 18 N -0.273 5.273 19 C 0.194 3.806 20 O -0.271 6.271 21 H 0.082 0.918 22 H 0.227 0.773 23 H 0.112 0.888 24 H 0.117 0.883 25 H 0.275 0.725 26 H 0.220 0.780 27 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.122 -12.251 -0.065 12.303 hybrid contribution -0.830 1.657 0.050 1.854 sum 0.292 -10.594 -0.015 10.598 Atomic orbital electron populations 1.69616 1.05955 1.28239 1.50106 1.25280 0.95646 0.99794 0.97052 0.85793 0.79724 0.81011 0.77796 1.19205 1.20656 1.20648 1.19762 0.93410 0.82142 1.47797 0.87858 1.41844 1.09270 1.04496 1.63507 1.19566 0.88096 0.84393 0.84887 1.90539 1.13875 1.87228 1.56478 1.20287 0.96561 0.91134 1.04571 1.21400 1.03316 1.00484 0.92960 1.19035 0.87358 0.88722 0.85420 1.84568 1.53738 1.56031 1.34066 1.67962 1.12968 1.13886 1.32405 1.24455 0.94751 0.96281 0.80542 1.67943 1.14429 1.12835 1.32061 1.19060 0.89159 0.87165 0.85209 1.84830 1.49146 1.59707 1.33372 0.91781 0.77280 0.88832 0.88272 0.72467 0.78037 0.73846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.89 13.05 55.50 0.72 -23.17 15 2 C 0.02 0.64 5.50 -17.47 -0.10 0.54 15 3 Si 0.93 20.72 29.55 -169.99 -5.02 15.70 15 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 15 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 7 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 15 8 H 0.10 2.99 7.16 -52.48 -0.38 2.62 15 9 N -0.56 -13.69 5.29 -10.96 -0.06 -13.75 15 10 C 0.44 10.19 7.78 -10.98 -0.09 10.10 15 11 O -0.60 -15.92 15.61 5.54 0.09 -15.83 15 12 C -0.08 -1.43 5.47 -29.03 -0.16 -1.59 15 13 C -0.17 -2.95 4.43 -104.05 -0.46 -3.41 15 14 C 0.38 6.29 7.80 -16.78 -0.13 6.15 15 15 O -0.48 -7.11 12.74 -18.32 -0.23 -7.34 15 16 N -0.55 -8.57 10.46 -14.71 -0.15 -8.72 15 17 C 0.33 4.56 12.28 -92.22 -1.13 3.42 15 18 N -0.55 -8.57 10.46 -14.71 -0.15 -8.73 15 19 C 0.38 6.27 7.80 -16.77 -0.13 6.14 15 20 O -0.46 -6.93 12.74 -18.32 -0.23 -7.16 15 21 H 0.27 6.83 8.31 -40.82 -0.34 6.49 15 22 H 0.39 9.21 7.90 -40.82 -0.32 8.89 15 23 H 0.09 1.36 7.63 -51.93 -0.40 0.97 15 24 H 0.10 1.51 7.62 -51.93 -0.40 1.12 15 25 H 0.41 5.11 9.06 45.56 0.41 5.52 15 26 H 0.20 1.88 8.06 -52.49 -0.42 1.46 15 27 H 0.40 3.41 9.06 45.56 0.41 3.83 15 LS Contribution 256.75 15.07 3.87 3.87 Total: -1.00 -34.63 256.75 -3.74 -38.37 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -0.22 Total: 13.79 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -2.34 Total: 12.97 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: 0.36 Total: -54.36 kcal Atomic # 8 Polarization: -29.95 SS G_CDS: -0.38 Total: -30.33 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -34.63 -3.74 -38.37 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001292650913.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.948 kcal (2) G-P(sol) polarization free energy of solvation -34.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds