Wall clock time and date at job start Sun Mar 29 2020 22:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00437 * 2 1 4 4 H 1.48505 * 109.46877 * 270.00258 * 3 2 1 5 5 H 1.48503 * 109.46646 * 29.99796 * 3 2 1 6 6 H 1.48494 * 109.47217 * 150.00212 * 3 2 1 7 7 C 1.37881 * 119.99881 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00142 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00298 * 180.02562 * 7 2 1 10 10 N 1.46495 * 109.47217 * 179.97438 * 9 7 2 11 11 C 1.34784 * 120.00133 * 179.97438 * 10 9 7 12 12 O 1.21575 * 119.99732 * 0.02562 * 11 10 9 13 13 C 1.47696 * 120.00467 * 180.02562 * 11 10 9 14 14 C 1.39723 * 120.13780 * 359.97438 * 13 11 10 15 15 C 1.37851 * 119.97871 * 180.02562 * 14 13 11 16 16 C 1.38411 * 120.26969 * 0.02674 * 15 14 13 17 17 C 1.38625 * 120.28671 * 359.97438 * 16 15 14 18 18 O 1.35967 * 119.99210 * 179.73077 * 17 16 15 19 19 C 1.38810 * 120.01244 * 359.97438 * 17 16 15 20 20 F 1.35101 * 120.13232 * 179.97438 * 19 17 16 21 21 H 0.97001 * 119.99600 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.47276 * 59.99700 * 9 7 2 23 23 H 1.09007 * 109.46903 * 299.99836 * 9 7 2 24 24 H 0.96993 * 120.00506 * 0.02562 * 10 9 7 25 25 H 1.07994 * 120.00869 * 0.02822 * 14 13 11 26 26 H 1.07994 * 119.85987 * 179.97438 * 15 14 13 27 27 H 1.08003 * 119.86059 * 179.97438 * 16 15 14 28 28 H 0.96695 * 114.00280 * 89.99361 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1149 -1.8978 0.0004 13 6 5.8172 -4.2143 -0.0008 14 6 4.9118 -5.2785 -0.0009 15 6 5.3749 -6.5769 -0.0010 16 6 6.7352 -6.8324 -0.0005 17 6 7.6433 -5.7850 -0.0004 18 8 8.9783 -6.0429 0.0056 19 6 7.1900 -4.4730 -0.0014 20 9 8.0729 -3.4504 -0.0008 21 1 -0.4849 0.8401 0.0004 22 1 3.8745 -0.6810 0.8905 23 1 3.8752 -0.6798 -0.8895 24 1 3.3695 -3.3127 -0.0009 25 1 3.8495 -5.0839 -0.0009 26 1 4.6734 -7.3979 -0.0006 27 1 7.0908 -7.8522 -0.0002 28 1 9.3679 -6.1205 -0.8760 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001297149205.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:25 Heat of formation + Delta-G solvation = -98.059747 kcal Electronic energy + Delta-G solvation = -16242.074939 eV Core-core repulsion = 13172.900908 eV Total energy + Delta-G solvation = -3069.174031 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.75756 -39.94271 -38.70954 -36.70608 -34.43414 -32.47675 -31.12037 -29.89301 -27.89889 -24.27752 -22.82416 -21.88883 -20.30581 -18.92274 -17.50968 -17.25832 -16.73251 -16.27098 -15.75173 -15.00480 -14.98812 -14.65527 -14.40356 -14.14779 -13.58790 -13.10603 -12.64366 -12.50730 -12.36132 -12.01885 -11.82319 -11.06776 -11.05169 -10.80058 -10.00203 -9.54806 -9.40933 -9.16056 -8.82273 -8.80054 -8.23143 -6.25063 -4.27932 0.59332 0.88041 2.88603 3.25217 3.31956 3.40972 3.52874 3.75395 3.94431 4.17597 4.30931 4.64440 4.66682 4.88078 5.10439 5.13856 5.43858 5.72259 5.82672 5.92829 6.06344 6.42495 6.75490 7.01524 7.10377 7.30792 7.31803 8.04581 8.40968 8.67581 8.79649 9.34467 10.86671 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.045328 B = 0.005609 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.565332 B = 4990.750006 C = 5590.640843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.079 3.921 3 Si 0.876 3.124 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.546 4.546 8 H 0.080 0.920 9 C 0.220 3.780 10 N -0.695 5.695 11 C 0.539 3.461 12 O -0.539 6.539 13 C -0.148 4.148 14 C -0.066 4.066 15 C -0.123 4.123 16 C -0.099 4.099 17 C 0.058 3.942 18 O -0.486 6.486 19 C 0.130 3.870 20 F -0.108 7.108 21 H 0.268 0.732 22 H 0.029 0.971 23 H 0.024 0.976 24 H 0.396 0.604 25 H 0.144 0.856 26 H 0.140 0.860 27 H 0.141 0.859 28 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.541 -14.896 -1.650 18.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.098 3.902 10 N -0.344 5.344 11 C 0.324 3.676 12 O -0.418 6.418 13 C -0.152 4.152 14 C -0.085 4.085 15 C -0.141 4.141 16 C -0.118 4.118 17 C 0.012 3.988 18 O -0.296 6.296 19 C 0.109 3.891 20 F -0.086 7.086 21 H 0.078 0.922 22 H 0.046 0.954 23 H 0.042 0.958 24 H 0.231 0.769 25 H 0.161 0.839 26 H 0.158 0.842 27 H 0.159 0.841 28 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 11.869 -14.004 -1.035 18.386 hybrid contribution 0.221 0.666 -0.521 0.874 sum 12.090 -13.338 -1.556 18.069 Atomic orbital electron populations 1.69874 1.06203 1.27510 1.49208 1.24780 0.94798 0.99182 0.93754 0.86822 0.80625 0.83188 0.79122 1.19787 1.20824 1.18437 1.21054 0.88323 0.95301 1.53667 0.90179 1.19570 0.95386 0.78125 0.97121 1.46103 1.05084 1.11402 1.71770 1.17986 0.83662 0.87318 0.78600 1.90803 1.55390 1.45171 1.50470 1.20316 0.92041 0.95794 1.07047 1.21397 1.00028 0.91495 0.95562 1.21044 0.95057 0.96926 1.01085 1.21457 0.92845 0.98957 0.98524 1.18323 0.84600 0.90015 1.05833 1.84903 1.17818 1.93100 1.33761 1.18167 0.86478 0.84227 1.00216 1.91591 1.66939 1.57441 1.92669 0.92190 0.95359 0.95816 0.76881 0.83881 0.84186 0.84135 0.75299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.17 13.96 55.43 0.77 -25.40 15 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 15 3 Si 0.88 21.36 27.47 -169.99 -4.67 16.69 15 4 H -0.27 -6.55 7.11 56.52 0.40 -6.14 15 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 15 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 15 7 C -0.55 -14.79 9.83 -34.44 -0.34 -15.13 15 8 H 0.08 2.23 7.84 -52.49 -0.41 1.82 15 9 C 0.22 5.41 4.50 -5.20 -0.02 5.39 15 10 N -0.69 -14.21 5.50 -62.48 -0.34 -14.55 15 11 C 0.54 10.96 7.77 -12.39 -0.10 10.86 15 12 O -0.54 -13.06 15.34 5.30 0.08 -12.98 15 13 C -0.15 -2.34 5.88 -104.93 -0.62 -2.95 15 14 C -0.07 -0.78 9.54 -39.17 -0.37 -1.15 15 15 C -0.12 -1.11 10.02 -39.66 -0.40 -1.51 15 16 C -0.10 -0.92 9.97 -39.37 -0.39 -1.31 15 17 C 0.06 0.70 6.70 -39.23 -0.26 0.43 15 18 O -0.49 -5.17 13.37 -19.64 -0.26 -5.43 15 19 C 0.13 2.03 7.29 -38.83 -0.28 1.74 15 20 F -0.11 -1.98 15.39 2.25 0.03 -1.95 15 21 H 0.27 7.38 8.31 -40.82 -0.34 7.04 15 22 H 0.03 0.74 7.20 -51.93 -0.37 0.36 15 23 H 0.02 0.61 7.57 -51.93 -0.39 0.22 15 24 H 0.40 6.89 6.35 -40.82 -0.26 6.63 15 25 H 0.14 1.46 6.40 -52.49 -0.34 1.12 15 26 H 0.14 0.83 8.06 -52.49 -0.42 0.41 15 27 H 0.14 0.90 8.06 -52.48 -0.42 0.48 15 28 H 0.39 2.19 9.06 45.56 0.41 2.61 15 LS Contribution 257.60 15.07 3.88 3.88 Total: -1.00 -34.26 257.60 -4.76 -39.02 By element: Atomic # 1 Polarization: 3.60 SS G_CDS: -1.37 Total: 2.23 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: -2.88 Total: -1.51 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: 0.43 Total: -39.95 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.18 Total: -18.41 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.03 Total: -1.95 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.67 Total: 16.69 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.26 -4.76 -39.02 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001297149205.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.041 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds