Wall clock time and date at job start Sun Mar 29 2020 21:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36026 * 116.99546 * 2 1 4 4 C 1.35406 * 120.46738 * 359.72847 * 3 2 1 5 5 O 1.33905 * 121.02411 * 179.69263 * 4 3 2 6 6 C 1.34360 * 122.00509 * 0.61575 * 5 4 3 7 7 C 1.47693 * 119.59648 * 179.69538 * 6 5 4 8 8 O 1.21611 * 120.00057 * 179.97438 * 7 6 5 9 9 N 1.34772 * 119.99926 * 359.97438 * 7 6 5 10 10 C 1.36454 * 120.00117 * 180.02562 * 9 7 6 11 11 H 1.07994 * 119.99477 * 359.97438 * 10 9 7 12 12 C 1.39336 * 120.00137 * 180.02562 * 10 9 7 13 13 N 1.31180 * 120.00277 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99948 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.47003 * 89.99898 * 14 12 10 16 16 H 1.48501 * 109.46892 * 209.99799 * 14 12 10 17 17 H 1.48499 * 109.47164 * 329.99751 * 14 12 10 18 18 C 1.36074 * 120.80697 * 359.67220 * 6 5 4 19 19 C 1.41963 * 118.89466 * 0.02562 * 18 6 5 20 20 O 1.22158 * 120.90625 * 179.97438 * 19 18 6 21 21 H 1.09001 * 109.47103 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47054 * 299.99764 * 1 2 3 23 23 H 1.09000 * 109.47187 * 59.99820 * 1 2 3 24 24 H 1.08000 * 119.48527 * 359.97438 * 4 3 2 25 25 H 0.96999 * 120.00123 * 0.02562 * 9 7 6 26 26 H 0.96995 * 120.00360 * 179.97438 * 13 12 10 27 27 H 1.08000 * 120.55102 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2120 0.0000 4 6 1.3182 2.3536 -0.0055 5 8 1.9144 3.5526 0.0006 6 6 3.2517 3.6829 0.0001 7 6 3.8530 5.0319 0.0002 8 8 5.0625 5.1584 0.0003 9 7 3.0614 6.1226 0.0002 10 6 3.6170 7.3689 -0.0002 11 1 4.6911 7.4812 -0.0002 12 6 2.7985 8.4966 0.0003 13 7 1.4938 8.3601 0.0008 14 14 3.5591 10.2027 0.0004 15 1 3.7602 10.6551 -1.3997 16 1 2.6535 11.1483 0.7010 17 1 4.8684 10.1610 0.7000 18 6 4.0587 2.5874 0.0000 19 6 3.4648 1.2979 -0.0001 20 8 4.1543 0.2895 -0.0006 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2398 2.2961 -0.0104 25 1 2.0967 6.0217 0.0005 26 1 0.9241 9.1451 0.0015 27 1 5.1331 2.6970 0.0001 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321649324.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:41 Heat of formation + Delta-G solvation = -121.267101 kcal Electronic energy + Delta-G solvation = -16411.048623 eV Core-core repulsion = 13328.495456 eV Total energy + Delta-G solvation = -3082.553167 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.12475 -40.52880 -39.88818 -39.15255 -36.42747 -33.71209 -33.55772 -32.30047 -28.69308 -27.81128 -25.56148 -24.86864 -22.15729 -20.48003 -19.89405 -19.77337 -18.51616 -17.83105 -17.18898 -16.87978 -16.44443 -16.11216 -15.92031 -15.73981 -15.33096 -15.32858 -15.13180 -14.75737 -13.71987 -13.59489 -13.02867 -12.62490 -12.42278 -12.37335 -12.11796 -11.73676 -11.17543 -10.82329 -10.73545 -10.31684 -9.36956 -8.74240 -6.12867 -0.68034 -0.09544 1.10593 1.37876 1.44973 1.57204 1.83325 2.04890 2.18999 2.37027 2.69641 3.06871 3.28048 3.37279 3.86753 4.02471 4.32957 4.36516 4.41118 4.50547 4.76743 4.91598 5.21337 5.62475 5.89916 6.02185 6.28736 6.55022 6.81437 7.15312 7.71998 8.40407 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.044361 B = 0.005707 C = 0.005070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.035472 B = 4905.402449 C = 5521.291959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.000 4.000 2 O -0.311 6.311 3 C -0.072 4.072 4 C 0.025 3.975 5 O -0.192 6.192 6 C 0.141 3.859 7 C 0.446 3.554 8 O -0.609 6.609 9 N -0.505 5.505 10 C -0.334 4.334 11 H 0.098 0.902 12 C 0.004 3.996 13 N -0.880 5.880 14 Si 1.004 2.996 15 H -0.265 1.265 16 H -0.264 1.264 17 H -0.268 1.268 18 C -0.277 4.277 19 C 0.402 3.598 20 O -0.527 6.527 21 H 0.123 0.877 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.253 0.747 25 H 0.407 0.593 26 H 0.293 0.707 27 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 -6.031 -0.020 11.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 O -0.226 6.226 3 C -0.119 4.119 4 C -0.041 4.041 5 O -0.093 6.093 6 C 0.088 3.912 7 C 0.234 3.766 8 O -0.499 6.499 9 N -0.137 5.137 10 C -0.464 4.464 11 H 0.116 0.884 12 C -0.202 4.202 13 N -0.516 5.516 14 Si 0.825 3.175 15 H -0.190 1.190 16 H -0.189 1.189 17 H -0.192 1.192 18 C -0.301 4.301 19 C 0.295 3.705 20 O -0.417 6.417 21 H 0.141 0.859 22 H 0.096 0.904 23 H 0.096 0.904 24 H 0.269 0.731 25 H 0.243 0.757 26 H 0.103 0.897 27 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -9.076 -6.256 -0.015 11.023 hybrid contribution -0.143 0.450 -0.006 0.472 sum -9.218 -5.806 -0.021 10.894 Atomic orbital electron populations 1.23631 0.75734 1.06749 1.03246 1.86239 1.23806 1.23361 1.89199 1.20694 0.94119 0.87238 1.09837 1.24739 0.99726 0.79595 1.00044 1.83055 1.19609 1.31993 1.74654 1.22420 0.80059 0.95598 0.93171 1.17100 0.86586 0.82321 0.90583 1.90682 1.14103 1.84357 1.60779 1.41907 1.09888 1.05070 1.56802 1.20055 0.94779 0.82151 1.49418 0.88445 1.26384 0.95506 1.04138 0.94180 1.69540 1.04137 1.34402 1.43552 0.84765 0.78373 0.75114 0.79234 1.19015 1.18861 1.19214 1.22714 1.02891 0.90991 1.13471 1.17341 0.87779 0.89113 0.76261 1.90756 1.66503 1.39023 1.45412 0.85866 0.90378 0.90360 0.73123 0.75729 0.89691 0.82643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.00 9.82 113.37 1.11 1.11 15 2 O -0.31 -8.48 10.35 -79.28 -0.82 -9.30 15 3 C -0.07 -2.17 6.72 22.57 0.15 -2.02 15 4 C 0.02 0.58 10.43 67.17 0.70 1.28 15 5 O -0.19 -5.99 9.06 0.74 0.01 -5.99 15 6 C 0.14 5.50 6.90 24.27 0.17 5.67 15 7 C 0.45 21.25 7.74 86.74 0.67 21.92 15 8 O -0.61 -33.33 15.83 -4.06 -0.06 -33.40 15 9 N -0.51 -24.27 5.26 -309.84 -1.63 -25.90 15 10 C -0.33 -17.15 9.68 84.24 0.82 -16.33 15 11 H 0.10 5.29 7.15 -2.91 -0.02 5.26 15 12 C 0.00 0.19 5.51 85.05 0.47 0.66 15 13 N -0.88 -41.29 13.04 21.73 0.28 -41.01 15 14 Si 1.00 37.26 29.56 68.60 2.03 39.28 15 15 H -0.27 -9.57 7.11 99.48 0.71 -8.86 15 16 H -0.26 -9.18 7.11 99.48 0.71 -8.47 15 17 H -0.27 -10.10 7.11 99.48 0.71 -9.40 15 18 C -0.28 -11.10 9.56 22.69 0.22 -10.88 15 19 C 0.40 15.71 6.81 24.15 0.16 15.88 15 20 O -0.53 -24.04 17.74 8.73 0.15 -23.89 15 21 H 0.12 1.15 8.14 -2.39 -0.02 1.14 15 22 H 0.08 0.71 7.68 -2.38 -0.02 0.70 15 23 H 0.08 0.71 7.65 -2.39 -0.02 0.69 15 24 H 0.25 2.99 6.21 -2.91 -0.02 2.97 15 25 H 0.41 18.24 7.28 -92.71 -0.68 17.56 15 26 H 0.29 12.56 8.30 -92.71 -0.77 11.79 15 27 H 0.16 6.63 7.57 -2.91 -0.02 6.61 15 Total: -1.00 -67.90 255.29 4.99 -62.92 By element: Atomic # 1 Polarization: 19.44 SS G_CDS: 0.56 Total: 20.00 kcal Atomic # 6 Polarization: 12.82 SS G_CDS: 4.47 Total: 17.29 kcal Atomic # 7 Polarization: -65.57 SS G_CDS: -1.35 Total: -66.91 kcal Atomic # 8 Polarization: -71.85 SS G_CDS: -0.72 Total: -72.57 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.28 kcal Total: -67.90 4.99 -62.92 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321649324.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.350 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds