Wall clock time and date at job start Sun Mar 29 2020 21:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31399 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48506 * 109.47158 * 269.99660 * 3 2 1 5 5 H 1.48499 * 109.47144 * 29.99413 * 3 2 1 6 6 H 1.48504 * 109.47383 * 150.00039 * 3 2 1 7 7 C 1.38957 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.07993 * 119.99787 * 0.02562 * 7 2 1 9 9 N 1.37100 * 120.00210 * 180.02562 * 7 2 1 10 10 C 1.34773 * 120.00045 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00184 * 0.02562 * 10 9 7 12 12 C 1.50699 * 120.00209 * 180.02562 * 10 9 7 13 13 N 1.46491 * 109.47312 * 180.02562 * 12 10 9 14 14 C 1.34783 * 119.99898 * 179.97438 * 13 12 10 15 15 O 1.21683 * 120.00090 * 0.02562 * 14 13 12 16 16 C 1.46725 * 119.99562 * 179.97438 * 14 13 12 17 17 C 1.36344 * 126.63753 * 179.97438 * 16 14 13 18 18 N 1.33698 * 107.44973 * 179.74164 * 17 16 14 19 19 C 1.30615 * 108.99562 * 0.24745 * 18 17 16 20 20 O 1.33670 * 109.15519 * 359.97438 * 19 18 17 21 21 H 0.97004 * 119.99860 * 0.02562 * 1 2 3 22 22 H 0.97006 * 119.99724 * 0.02562 * 9 7 2 23 23 H 1.09000 * 109.46948 * 59.99376 * 12 10 9 24 24 H 1.09001 * 109.46680 * 300.00082 * 12 10 9 25 25 H 0.97000 * 120.00053 * 359.97438 * 13 12 10 26 26 H 1.08002 * 126.27901 * 0.02562 * 17 16 14 27 27 H 1.07996 * 125.42194 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4455 2.6527 0.6999 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 0.0005 8 1 1.4688 -2.1386 0.0005 9 7 3.3798 -1.2034 0.0011 10 6 4.0536 -2.3706 0.0011 11 8 3.4472 -3.4210 0.0001 12 6 5.5606 -2.3707 0.0022 13 7 6.0489 -3.7518 0.0014 14 6 7.3740 -3.9981 0.0017 15 8 8.1648 -3.0733 0.0031 16 6 7.8630 -5.3815 0.0014 17 6 9.1656 -5.7840 0.0011 18 7 9.1721 -7.1210 0.0067 19 6 7.9392 -7.5522 0.0049 20 8 7.1084 -6.5050 -0.0012 21 1 -0.4850 0.8401 -0.0004 22 1 3.8648 -0.3633 0.0014 23 1 5.9232 -1.8572 0.8927 24 1 5.9246 -1.8565 -0.8873 25 1 5.4185 -4.4891 0.0006 26 1 10.0333 -5.1409 0.0015 27 1 7.6389 -8.5895 0.0088 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322789600.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:04 Heat of formation + Delta-G solvation = -40.415320 kcal Electronic energy + Delta-G solvation = -15992.849038 eV Core-core repulsion = 12946.094619 eV Total energy + Delta-G solvation = -3046.754419 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.61485 -39.70703 -38.35702 -35.27816 -34.59701 -33.86437 -31.87782 -30.86438 -28.08432 -24.88106 -23.57197 -22.81697 -20.74165 -19.80163 -19.05597 -18.25665 -17.09258 -17.01873 -16.05716 -15.49777 -15.39955 -14.98449 -14.49017 -14.19563 -14.00877 -13.60015 -13.20343 -12.59432 -12.25551 -12.24434 -11.73768 -11.28607 -11.12958 -10.69049 -10.43678 -10.11206 -9.76037 -9.43092 -9.06116 -8.86379 -8.36751 -6.45990 -3.99012 0.64855 2.23113 2.26610 2.94830 2.98729 3.00173 3.07303 3.11830 3.48014 3.91749 3.98731 4.42645 4.71040 4.72606 5.08163 5.29354 5.35244 5.55349 5.65511 5.67284 5.94458 6.26227 7.20303 7.37621 7.48931 7.90601 8.01313 8.38401 8.75772 9.23390 9.55780 10.65943 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.057898 B = 0.004635 C = 0.004302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 483.493949 B = 6039.059794 C = 6507.408472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.046 3.954 3 Si 0.880 3.120 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.267 1.267 7 C -0.312 4.312 8 H 0.122 0.878 9 N -0.573 5.573 10 C 0.435 3.565 11 O -0.578 6.578 12 C 0.105 3.895 13 N -0.692 5.692 14 C 0.605 3.395 15 O -0.524 6.524 16 C -0.100 4.100 17 C 0.047 3.953 18 N -0.497 5.497 19 C 0.198 3.802 20 O -0.186 6.186 21 H 0.276 0.724 22 H 0.375 0.625 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.418 0.582 26 H 0.197 0.803 27 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.438 -7.993 -0.009 16.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.159 4.159 3 Si 0.706 3.294 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.192 1.192 7 C -0.440 4.440 8 H 0.140 0.860 9 N -0.211 5.211 10 C 0.221 3.779 11 O -0.462 6.462 12 C -0.023 4.023 13 N -0.345 5.345 14 C 0.389 3.611 15 O -0.402 6.402 16 C -0.156 4.156 17 C -0.095 4.095 18 N -0.225 5.225 19 C -0.027 4.027 20 O -0.072 6.072 21 H 0.087 0.913 22 H 0.208 0.792 23 H 0.109 0.891 24 H 0.109 0.891 25 H 0.257 0.743 26 H 0.214 0.786 27 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 14.757 -8.284 -0.006 16.924 hybrid contribution -0.363 1.336 0.011 1.385 sum 14.395 -6.948 0.006 15.984 Atomic orbital electron populations 1.69612 1.05736 1.27909 1.47794 1.25078 0.95551 0.98225 0.97030 0.86663 0.79907 0.83699 0.79175 1.19340 1.19916 1.19207 1.19444 0.78872 0.96850 1.48840 0.86032 1.42109 1.07747 1.06076 1.65156 1.19543 0.87856 0.84997 0.85475 1.90556 1.69058 1.30860 1.55731 1.21093 0.94276 0.83023 1.03897 1.45610 1.06388 1.10124 1.72399 1.16302 0.82754 0.84347 0.77661 1.90888 1.55650 1.42172 1.51532 1.23227 0.91425 0.86793 1.14130 1.23591 0.96464 0.90738 0.98752 1.70454 1.22412 1.10757 1.18914 1.28433 0.82901 0.94284 0.97077 1.84562 1.39273 1.14932 1.68388 0.91303 0.79180 0.89092 0.89090 0.74301 0.78566 0.72801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.54 13.96 55.50 0.77 -23.77 15 2 C 0.05 1.21 5.50 -17.47 -0.10 1.11 15 3 Si 0.88 18.59 27.74 -169.99 -4.71 13.87 15 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 15 5 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 6 H -0.27 -5.13 6.52 56.52 0.37 -4.76 15 7 C -0.31 -8.44 10.16 -14.93 -0.15 -8.59 15 8 H 0.12 3.76 7.39 -52.49 -0.39 3.37 15 9 N -0.57 -12.99 5.09 -10.96 -0.06 -13.04 15 10 C 0.44 9.31 7.85 -10.99 -0.09 9.23 15 11 O -0.58 -14.37 15.24 5.55 0.08 -14.28 15 12 C 0.10 1.72 6.15 -5.20 -0.03 1.69 15 13 N -0.69 -10.91 5.52 -62.79 -0.35 -11.26 15 14 C 0.60 9.11 7.79 -12.83 -0.10 9.01 15 15 O -0.52 -8.85 16.89 5.20 0.09 -8.76 15 16 C -0.10 -1.30 7.18 -36.84 -0.26 -1.56 15 17 C 0.05 0.56 11.66 -17.42 -0.20 0.35 15 18 N -0.50 -5.52 11.26 -14.67 -0.17 -5.69 15 19 C 0.20 1.72 13.21 52.25 0.69 2.41 15 20 O -0.19 -2.14 10.57 4.42 0.05 -2.10 15 21 H 0.28 7.16 8.31 -40.82 -0.34 6.82 15 22 H 0.37 7.42 5.76 -40.82 -0.24 7.18 15 23 H 0.09 1.37 8.14 -51.93 -0.42 0.94 15 24 H 0.09 1.36 8.14 -51.93 -0.42 0.93 15 25 H 0.42 6.74 7.23 -40.82 -0.30 6.45 15 26 H 0.20 1.95 8.06 -52.49 -0.42 1.52 15 27 H 0.26 0.80 8.06 -52.49 -0.42 0.38 15 LS Contribution 257.59 15.07 3.88 3.88 Total: -1.00 -32.81 257.59 -2.43 -35.24 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -1.78 Total: 12.26 kcal Atomic # 6 Polarization: 13.89 SS G_CDS: -0.24 Total: 13.65 kcal Atomic # 7 Polarization: -53.96 SS G_CDS: 0.21 Total: -53.76 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: 0.22 Total: -25.14 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -4.71 Total: 13.87 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -32.81 -2.43 -35.24 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322789600.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.179 kcal (2) G-P(sol) polarization free energy of solvation -32.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds