Wall clock time and date at job start Sun Mar 29 2020 21:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.34968 * 119.69960 * 2 1 4 4 C 1.38389 * 119.01008 * 179.97438 * 3 2 1 5 5 C 1.47223 * 120.74773 * 180.02562 * 4 3 2 6 6 O 1.21641 * 120.00671 * 174.76885 * 5 4 3 7 7 N 1.34775 * 119.99508 * 354.76621 * 5 4 3 8 8 C 1.36955 * 120.00169 * 185.10860 * 7 5 4 9 9 H 1.08001 * 119.99628 * 0.02562 * 8 7 5 10 10 C 1.38983 * 120.00235 * 180.02562 * 8 7 5 11 11 N 1.31408 * 119.99915 * 180.02562 * 10 8 7 12 12 Si 1.86799 * 120.00057 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.46796 * 90.00166 * 12 10 8 14 14 H 1.48502 * 109.47344 * 209.99839 * 12 10 8 15 15 H 1.48492 * 109.47391 * 330.00302 * 12 10 8 16 16 C 1.42141 * 118.51370 * 0.02562 * 4 3 2 17 17 O 1.35019 * 120.33417 * 180.02562 * 16 4 3 18 18 N 1.32202 * 119.32939 * 0.02562 * 16 4 3 19 19 C 1.33325 * 120.94174 * 359.71842 * 18 16 4 20 20 O 1.21907 * 119.19637 * 180.29838 * 19 18 16 21 21 H 1.08997 * 109.47371 * 90.00458 * 1 2 3 22 22 H 1.08998 * 109.47874 * 329.99714 * 1 2 3 23 23 H 1.09002 * 109.46712 * 209.99956 * 1 2 3 24 24 H 1.07996 * 120.49995 * 0.02562 * 3 2 1 25 25 H 0.97004 * 120.00061 * 5.10800 * 7 5 4 26 26 H 0.97006 * 119.99949 * 180.02562 * 11 10 8 27 27 H 0.96695 * 113.99790 * 180.02562 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1337 1.1724 0.0000 4 6 3.5174 1.1557 0.0005 5 6 4.2853 2.4119 0.0011 6 8 5.4976 2.3838 0.0976 7 7 3.6450 3.5930 -0.1053 8 6 4.3633 4.7543 -0.2102 9 1 5.4429 4.7236 -0.2080 10 6 3.7030 5.9724 -0.3194 11 7 4.3923 7.0867 -0.4205 12 14 1.8358 6.0256 -0.3240 13 1 1.3413 6.1649 1.0693 14 1 1.3755 7.1843 -1.1307 15 1 1.3063 4.7700 -0.9140 16 6 4.1809 -0.1013 0.0005 17 8 5.5298 -0.1605 0.0016 18 7 3.4639 -1.2120 -0.0005 19 6 2.1314 -1.1677 0.0041 20 8 1.5017 -2.2115 0.0085 21 1 -0.3634 -0.0001 -1.0276 22 1 -0.3635 0.8899 0.5138 23 1 -0.3633 -0.8900 0.5138 24 1 1.5969 2.1095 0.0004 25 1 2.6754 3.6206 -0.1077 26 1 3.9315 7.9369 -0.4964 27 1 5.8840 -1.0602 0.0011 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325093795.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:58:43 Heat of formation + Delta-G solvation = -85.436846 kcal Electronic energy + Delta-G solvation = -16778.247729 eV Core-core repulsion = 13729.541029 eV Total energy + Delta-G solvation = -3048.706699 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.99167 -40.43172 -39.50840 -37.95824 -36.04536 -35.73687 -33.91430 -32.41534 -28.59191 -27.16295 -26.06726 -24.48406 -21.79245 -20.90144 -20.78783 -19.27084 -18.38810 -17.79459 -17.20606 -16.98327 -16.38561 -15.78334 -15.78139 -15.23072 -15.13851 -14.77652 -14.45856 -14.34987 -14.17000 -13.45801 -12.97770 -12.55697 -12.39296 -12.21101 -11.93910 -11.51218 -11.24530 -11.20711 -10.57610 -10.27263 -9.79493 -8.39026 -5.98899 -0.54714 0.10542 1.26869 1.31507 1.44287 1.50950 2.06632 2.14830 2.27933 2.61742 2.66886 3.01652 3.24720 3.35904 3.75175 4.11288 4.17997 4.34431 4.44770 4.78825 4.90864 5.12047 5.53770 5.94262 6.20387 6.51635 6.57566 6.85469 6.91621 7.33252 7.88826 8.77623 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.029305 B = 0.008079 C = 0.006360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.222724 B = 3464.965552 C = 4401.151493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.048 3.952 2 N -0.508 5.508 3 C 0.256 3.744 4 C -0.293 4.293 5 C 0.512 3.488 6 O -0.602 6.602 7 N -0.572 5.572 8 C -0.325 4.325 9 H 0.058 0.942 10 C -0.015 4.015 11 N -0.928 5.928 12 Si 0.956 3.044 13 H -0.251 1.251 14 H -0.278 1.278 15 H -0.213 1.213 16 C 0.492 3.508 17 O -0.421 6.421 18 N -0.639 5.639 19 C 0.647 3.353 20 O -0.572 6.572 21 H 0.101 0.899 22 H 0.135 0.865 23 H 0.091 0.909 24 H 0.229 0.771 25 H 0.388 0.612 26 H 0.281 0.719 27 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.708 -9.152 0.568 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 N -0.220 5.220 3 C 0.114 3.886 4 C -0.305 4.305 5 C 0.300 3.700 6 O -0.487 6.487 7 N -0.213 5.213 8 C -0.454 4.454 9 H 0.077 0.923 10 C -0.214 4.214 11 N -0.568 5.568 12 Si 0.775 3.225 13 H -0.175 1.175 14 H -0.204 1.204 15 H -0.135 1.135 16 C 0.292 3.708 17 O -0.214 6.214 18 N -0.400 5.400 19 C 0.349 3.651 20 O -0.450 6.450 21 H 0.119 0.881 22 H 0.153 0.847 23 H 0.109 0.891 24 H 0.245 0.755 25 H 0.225 0.775 26 H 0.090 0.910 27 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -13.051 -9.895 0.593 16.389 hybrid contribution -0.304 0.592 -0.060 0.668 sum -13.355 -9.303 0.533 16.284 Atomic orbital electron populations 1.22741 0.72671 1.07402 1.06409 1.46174 1.12544 1.05937 1.57393 1.23282 0.90555 0.92195 0.82538 1.19726 0.93116 0.92929 1.24776 1.17283 0.87097 0.82692 0.82913 1.90710 1.15463 1.86883 1.55603 1.41725 1.08086 1.05029 1.66493 1.18993 0.92731 0.84028 1.49698 0.92349 1.26215 1.06077 0.93436 0.95686 1.69803 1.39299 0.99083 1.48626 0.85510 0.75742 0.81038 0.80235 1.17545 1.20369 1.13504 1.20308 0.84939 0.88191 0.77319 1.85353 1.14222 1.37444 1.84365 1.69582 1.06259 1.27837 1.36316 1.17482 0.84734 0.83660 0.79257 1.90934 1.66554 1.31467 1.56014 0.88085 0.84675 0.89051 0.75482 0.77502 0.90969 0.71668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.53 10.35 127.77 1.32 1.86 15 2 N -0.51 -10.84 2.96 -679.89 -2.01 -12.85 15 3 C 0.26 5.34 9.90 84.25 0.83 6.17 15 4 C -0.29 -9.35 5.90 -19.91 -0.12 -9.47 15 5 C 0.51 22.02 7.70 86.60 0.67 22.68 15 6 O -0.60 -32.39 14.90 16.08 0.24 -32.15 15 7 N -0.57 -23.97 5.04 -310.15 -1.56 -25.53 15 8 C -0.33 -17.54 10.16 84.07 0.85 -16.68 15 9 H 0.06 3.83 7.39 -2.91 -0.02 3.81 15 10 C -0.01 -0.74 5.50 84.93 0.47 -0.28 15 11 N -0.93 -52.44 13.96 21.67 0.30 -52.14 15 12 Si 0.96 32.63 27.74 68.60 1.90 34.54 15 13 H -0.25 -8.00 7.11 99.48 0.71 -7.29 15 14 H -0.28 -9.81 7.11 99.48 0.71 -9.10 15 15 H -0.21 -5.19 6.52 99.48 0.65 -4.54 15 16 C 0.49 16.15 7.93 85.61 0.68 16.83 15 17 O -0.42 -13.63 11.78 -62.67 -0.74 -14.37 15 18 N -0.64 -21.10 10.38 -438.17 -4.55 -25.65 15 19 C 0.65 20.29 8.32 179.61 1.49 21.79 15 20 O -0.57 -20.96 16.66 -5.01 -0.08 -21.04 15 21 H 0.10 0.84 8.14 -2.39 -0.02 0.82 15 22 H 0.14 0.36 8.02 -2.39 -0.02 0.34 15 23 H 0.09 1.28 7.35 -2.39 -0.02 1.26 15 24 H 0.23 2.53 6.48 -2.91 -0.02 2.51 15 25 H 0.39 12.13 3.87 -92.71 -0.36 11.77 15 26 H 0.28 14.45 8.31 -92.70 -0.77 13.68 15 27 H 0.42 8.96 8.98 -74.06 -0.67 8.29 15 Total: -1.00 -84.61 248.44 -0.13 -84.73 By element: Atomic # 1 Polarization: 21.38 SS G_CDS: 0.17 Total: 21.56 kcal Atomic # 6 Polarization: 36.71 SS G_CDS: 6.20 Total: 42.91 kcal Atomic # 7 Polarization: -108.35 SS G_CDS: -7.82 Total: -116.17 kcal Atomic # 8 Polarization: -66.98 SS G_CDS: -0.58 Total: -67.56 kcal Atomic # 14 Polarization: 32.63 SS G_CDS: 1.90 Total: 34.54 kcal Total: -84.61 -0.13 -84.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325093795.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.702 kcal (2) G-P(sol) polarization free energy of solvation -84.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds