Wall clock time and date at job start Sun Mar 29 2020 22:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99780 * 2 1 4 4 H 1.48499 * 109.47505 * 270.00400 * 3 2 1 5 5 H 1.48505 * 109.47032 * 30.00195 * 3 2 1 6 6 H 1.48501 * 109.47068 * 149.99967 * 3 2 1 7 7 C 1.37873 * 120.00158 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99875 * 359.97438 * 7 2 1 9 9 C 1.50703 * 120.00015 * 179.97438 * 7 2 1 10 10 O 1.42898 * 113.38539 * 313.08072 * 9 7 2 11 11 C 1.53512 * 114.17195 * 179.97438 * 9 7 2 12 12 N 1.47479 * 87.93383 * 220.33195 * 11 9 7 13 13 C 1.38567 * 111.00436 * 138.70291 * 12 11 9 14 14 C 1.39460 * 120.51960 * 179.97438 * 13 12 11 15 15 C 1.38463 * 118.31482 * 179.97438 * 14 13 12 16 16 F 1.35104 * 120.43239 * 180.02562 * 15 14 13 17 17 N 1.32790 * 119.13960 * 0.27378 * 15 14 13 18 18 C 1.31761 * 120.96122 * 359.43964 * 17 15 14 19 19 N 1.31768 * 121.85931 * 0.57554 * 18 17 15 20 20 C 1.47489 * 87.83552 * 27.00736 * 12 11 9 21 21 H 0.97003 * 120.00358 * 359.97438 * 1 2 3 22 22 H 0.96706 * 114.00068 * 46.91501 * 10 9 7 23 23 H 1.08994 * 113.47400 * 105.56307 * 11 9 7 24 24 H 1.09002 * 113.47538 * 335.10055 * 11 9 7 25 25 H 1.07999 * 120.84133 * 0.02562 * 14 13 12 26 26 H 1.07997 * 119.07383 * 180.31864 * 18 17 15 27 27 H 1.09000 * 113.47077 * 87.76085 * 20 12 11 28 28 H 1.08993 * 113.47424 * 218.22292 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 8 4.0783 -0.2979 -0.9591 11 6 4.1402 -2.5945 -0.0010 12 7 5.1438 -2.0857 0.9523 13 6 5.4000 -3.0156 1.9472 14 6 6.3218 -2.7375 2.9561 15 6 6.5422 -3.6992 3.9276 16 9 7.4254 -3.4746 4.9249 17 7 5.8778 -4.8472 3.8635 18 6 5.0096 -5.0750 2.8989 19 7 4.7699 -4.1874 1.9549 20 6 4.1406 -1.0997 1.3960 21 1 -0.4851 0.8400 0.0004 22 1 3.6805 0.5836 -0.9567 23 1 4.5623 -2.8809 -0.9642 24 1 3.4908 -3.3619 0.4203 25 1 6.8497 -1.7956 2.9795 26 1 4.4824 -6.0173 2.8791 27 1 3.4914 -1.4683 2.1903 28 1 4.5631 -0.1196 1.6168 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327696777.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:44 Heat of formation + Delta-G solvation = 7.408708 kcal Electronic energy + Delta-G solvation = -16818.199090 eV Core-core repulsion = 13785.891266 eV Total energy + Delta-G solvation = -3032.307824 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -50.36301 -42.72087 -40.83553 -37.12957 -34.57165 -34.26531 -33.17693 -29.89443 -27.35729 -26.94396 -25.47125 -23.73172 -21.15734 -19.91034 -19.44529 -18.82623 -18.20701 -17.51217 -17.19973 -16.69837 -16.49912 -16.08202 -15.53576 -15.20399 -15.12788 -14.77499 -14.60557 -14.01402 -13.77970 -12.88150 -12.75074 -12.42440 -12.27444 -11.93306 -11.66436 -11.27035 -11.05935 -11.00101 -10.74878 -10.53203 -10.00430 -8.45251 -6.57142 -0.37580 -0.35633 1.23441 1.27973 1.38873 2.06357 2.15574 2.31124 2.53913 2.75643 2.98409 3.18906 3.58007 3.75085 3.83000 3.89311 4.09470 4.33988 4.47661 4.61842 4.70268 4.83853 5.01831 5.14205 5.27764 5.62786 5.88322 6.02548 6.50355 6.68509 6.78001 7.10558 8.70330 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.039741 B = 0.006800 C = 0.006534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 704.385651 B = 4116.773241 C = 4284.325461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.026 3.974 3 Si 0.919 3.081 4 H -0.251 1.251 5 H -0.283 1.283 6 H -0.233 1.233 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.191 3.809 10 O -0.550 6.550 11 C 0.038 3.962 12 N -0.429 5.429 13 C 0.340 3.660 14 C -0.244 4.244 15 C 0.363 3.637 16 F -0.097 7.097 17 N -0.577 5.577 18 C 0.355 3.645 19 N -0.569 5.569 20 C -0.004 4.004 21 H 0.274 0.726 22 H 0.353 0.647 23 H 0.087 0.913 24 H 0.107 0.893 25 H 0.176 0.824 26 H 0.246 0.754 27 H 0.078 0.922 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.148 -3.649 6.158 13.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.175 4.175 3 Si 0.744 3.256 4 H -0.176 1.176 5 H -0.209 1.209 6 H -0.157 1.157 7 C -0.582 4.582 8 H 0.072 0.928 9 C 0.150 3.850 10 O -0.362 6.362 11 C -0.090 4.090 12 N -0.147 5.147 13 C 0.103 3.897 14 C -0.269 4.269 15 C 0.203 3.797 16 F -0.076 7.076 17 N -0.299 5.299 18 C 0.067 3.933 19 N -0.289 5.289 20 C -0.131 4.131 21 H 0.083 0.917 22 H 0.206 0.794 23 H 0.105 0.895 24 H 0.125 0.875 25 H 0.194 0.806 26 H 0.261 0.739 27 H 0.096 0.904 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.593 -4.648 5.818 13.779 hybrid contribution -0.447 1.601 0.586 1.762 sum 11.146 -3.048 6.404 13.211 Atomic orbital electron populations 1.69998 1.08023 1.28852 1.49265 1.25865 0.95685 1.03015 0.92969 0.86313 0.79855 0.79146 0.80286 1.17638 1.20939 1.15681 1.21365 0.89706 0.94498 1.52581 0.92802 1.20118 0.90624 0.89045 0.85189 1.86479 1.63983 1.25071 1.60637 1.23925 0.91738 0.96945 0.96410 1.66313 1.31736 1.08786 1.07907 1.20960 0.88778 0.90510 0.89500 1.22185 1.04301 1.04035 0.96389 1.18202 0.86862 0.90074 0.84605 1.91671 1.64039 1.93730 1.58133 1.67940 1.11843 1.21334 1.28804 1.25460 0.88080 0.98104 0.81628 1.68553 1.26818 1.04458 1.29068 1.24931 0.90928 0.96066 1.01163 0.91679 0.79384 0.89470 0.87491 0.80617 0.73877 0.90371 0.88568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.18 13.96 21.45 0.30 -52.88 15 2 C 0.03 1.37 5.47 84.65 0.46 1.83 15 3 Si 0.92 38.30 24.41 68.60 1.67 39.97 15 4 H -0.25 -9.86 7.06 99.48 0.70 -9.16 15 5 H -0.28 -11.70 7.11 99.48 0.71 -10.99 15 6 H -0.23 -8.75 5.46 99.48 0.54 -8.20 15 7 C -0.54 -28.87 9.26 25.60 0.24 -28.63 15 8 H 0.05 3.17 8.06 -2.91 -0.02 3.14 15 9 C 0.19 8.58 1.10 -11.20 -0.01 8.57 15 10 O -0.55 -24.69 13.32 -148.98 -1.98 -26.68 15 11 C 0.04 1.50 6.81 83.58 0.57 2.07 15 12 N -0.43 -15.63 6.43 -731.71 -4.70 -20.33 15 13 C 0.34 11.03 5.86 133.10 0.78 11.81 15 14 C -0.24 -6.67 10.08 22.62 0.23 -6.44 15 15 C 0.36 9.65 8.50 84.60 0.72 10.37 15 16 F -0.10 -2.39 17.30 44.97 0.78 -1.61 15 17 N -0.58 -15.38 10.45 -201.32 -2.10 -17.48 15 18 C 0.36 8.82 12.28 180.90 2.22 11.04 15 19 N -0.57 -17.60 8.36 -197.70 -1.65 -19.26 15 20 C 0.00 -0.16 6.49 83.58 0.54 0.38 15 21 H 0.27 14.63 8.31 -92.71 -0.77 13.86 15 22 H 0.35 14.94 3.17 -74.05 -0.23 14.70 15 23 H 0.09 3.39 8.14 -2.39 -0.02 3.37 15 24 H 0.11 4.32 6.65 -2.39 -0.02 4.30 15 25 H 0.18 4.11 8.06 -2.91 -0.02 4.08 15 26 H 0.25 3.85 8.06 -2.91 -0.02 3.83 15 27 H 0.08 3.09 7.85 -2.39 -0.02 3.07 15 28 H 0.10 3.47 7.11 -2.39 -0.02 3.45 15 Total: -1.00 -60.67 245.11 -1.14 -61.81 By element: Atomic # 1 Polarization: 24.66 SS G_CDS: 0.81 Total: 25.46 kcal Atomic # 6 Polarization: 5.23 SS G_CDS: 5.75 Total: 10.98 kcal Atomic # 7 Polarization: -101.78 SS G_CDS: -8.16 Total: -109.94 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -1.98 Total: -26.68 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 38.30 SS G_CDS: 1.67 Total: 39.97 kcal Total: -60.67 -1.14 -61.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327696777.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.220 kcal (2) G-P(sol) polarization free energy of solvation -60.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds