Wall clock time and date at job start Sun Mar 29 2020 21:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48508 * 109.47139 * 270.00230 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99932 * 3 2 1 6 6 H 1.48498 * 109.47341 * 150.00366 * 3 2 1 7 7 C 1.38948 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00141 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99907 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00036 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99952 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47387 * 180.02562 * 12 10 9 14 14 C 1.34772 * 120.00271 * 179.97438 * 13 12 10 15 15 O 1.21617 * 120.00267 * 0.02562 * 14 13 12 16 16 C 1.47424 * 120.00245 * 179.97438 * 14 13 12 17 17 C 1.36093 * 126.44986 * 180.02562 * 16 14 13 18 18 O 1.34255 * 106.94938 * 180.24817 * 17 16 14 19 19 C 1.34053 * 108.22576 * 359.57524 * 18 17 16 20 20 N 1.29935 * 109.24194 * 0.43696 * 19 18 17 21 21 H 0.96997 * 119.99584 * 359.97438 * 1 2 3 22 22 H 0.96992 * 119.99997 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.47321 * 60.00072 * 12 10 9 24 24 H 1.09006 * 109.47355 * 300.00011 * 12 10 9 25 25 H 0.97003 * 120.00004 * 0.02562 * 13 12 10 26 26 H 1.08002 * 126.52257 * 359.97438 * 17 16 14 27 27 H 1.08002 * 125.38217 * 180.13441 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0030 12 6 1.2436 -4.8629 -0.0022 13 7 2.1955 -5.9765 -0.0027 14 6 1.7463 -7.2471 -0.0027 15 8 0.5506 -7.4694 -0.0028 16 6 2.7042 -8.3677 -0.0038 17 6 2.3975 -9.6937 -0.0044 18 8 3.5604 -10.3644 0.0002 19 6 4.5598 -9.4709 -0.0058 20 7 4.0614 -8.2710 -0.0046 21 1 -0.4849 0.8401 0.0004 22 1 0.3534 -2.3906 -0.0005 23 1 0.6166 -4.9201 -0.8919 24 1 0.6173 -4.9213 0.8881 25 1 3.1492 -5.7993 -0.0022 26 1 1.4070 -10.1243 -0.0039 27 1 5.6129 -9.7106 -0.0061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328649999.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:56 Heat of formation + Delta-G solvation = -49.595840 kcal Electronic energy + Delta-G solvation = -15905.002358 eV Core-core repulsion = 12857.849842 eV Total energy + Delta-G solvation = -3047.152517 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.56394 -39.45573 -38.07405 -35.00296 -34.44788 -33.65120 -31.37387 -30.57632 -27.91843 -24.89657 -23.52749 -22.78568 -20.47338 -19.62876 -18.59105 -17.96711 -16.89193 -16.72376 -15.81951 -15.36607 -15.21810 -15.10975 -14.48567 -13.98875 -13.82251 -13.79223 -13.25663 -12.19180 -12.02824 -11.62232 -11.48223 -11.11354 -10.96178 -10.44688 -10.31821 -10.13534 -9.62371 -9.36398 -8.81728 -8.62049 -8.08817 -6.50315 -3.92140 0.99624 1.94998 2.51030 3.12832 3.20770 3.24216 3.30888 3.35990 3.75345 3.92898 4.12964 4.69137 4.83706 4.89036 5.17959 5.34269 5.44778 5.82100 5.93630 5.95486 6.07098 6.60828 7.26004 7.47526 7.79714 7.93000 8.32769 8.46884 9.05987 9.40223 9.88494 10.66642 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.062534 B = 0.004300 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.648558 B = 6510.615331 C = 6943.118698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.593 6.593 12 C 0.107 3.893 13 N -0.687 5.687 14 C 0.597 3.403 15 O -0.547 6.547 16 C -0.067 4.067 17 C 0.011 3.989 18 O -0.203 6.203 19 C 0.175 3.825 20 N -0.461 5.461 21 H 0.274 0.726 22 H 0.396 0.604 23 H 0.087 0.913 24 H 0.087 0.913 25 H 0.420 0.580 26 H 0.231 0.769 27 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.969 -16.416 0.001 16.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.434 4.434 8 H 0.123 0.877 9 N -0.184 5.184 10 C 0.213 3.787 11 O -0.479 6.479 12 C -0.020 4.020 13 N -0.339 5.339 14 C 0.381 3.619 15 O -0.426 6.426 16 C -0.187 4.187 17 C -0.063 4.063 18 O -0.088 6.088 19 C -0.053 4.053 20 N -0.190 5.190 21 H 0.084 0.916 22 H 0.230 0.770 23 H 0.105 0.895 24 H 0.105 0.895 25 H 0.260 0.740 26 H 0.247 0.753 27 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges 4.151 -15.791 0.009 16.327 hybrid contribution -0.088 0.386 -0.008 0.396 sum 4.063 -15.405 0.001 15.932 Atomic orbital electron populations 1.69617 1.06001 1.28499 1.49425 1.25327 0.95679 0.99931 0.96826 0.85804 0.79229 0.80462 0.78482 1.20274 1.20807 1.19310 1.19738 0.93487 0.81977 1.48159 0.87654 1.41781 1.09464 1.04421 1.62763 1.19706 0.88323 0.84943 0.85699 1.90521 1.13640 1.86729 1.57033 1.21036 0.91784 0.85682 1.03522 1.45535 1.12429 1.04037 1.71948 1.16709 0.86304 0.81745 0.77120 1.90812 1.14958 1.84800 1.51999 1.21841 0.90664 0.94496 1.11664 1.25289 0.89727 0.90877 1.00375 1.84435 1.15297 1.39976 1.69086 1.28170 0.95532 0.81214 1.00429 1.70841 1.07198 1.24745 1.16197 0.91611 0.77027 0.89478 0.89490 0.74000 0.75289 0.72921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.01 13.05 55.50 0.72 -23.29 15 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 15 3 Si 0.93 20.70 29.55 -169.99 -5.02 15.68 15 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.27 -5.94 7.11 56.52 0.40 -5.54 15 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 15 8 H 0.11 3.02 7.16 -52.49 -0.38 2.64 15 9 N -0.55 -13.78 5.29 -10.96 -0.06 -13.84 15 10 C 0.43 10.05 7.85 -10.99 -0.09 9.97 15 11 O -0.59 -15.71 15.24 5.55 0.08 -15.62 15 12 C 0.11 2.03 6.15 -5.20 -0.03 2.00 15 13 N -0.69 -12.51 5.52 -62.56 -0.35 -12.86 15 14 C 0.60 10.12 7.81 -12.52 -0.10 10.03 15 15 O -0.55 -10.13 16.89 5.26 0.09 -10.05 15 16 C -0.07 -0.94 6.99 -83.02 -0.58 -1.52 15 17 C 0.01 0.12 11.95 29.96 0.36 0.48 15 18 O -0.20 -1.87 10.73 6.51 0.07 -1.80 15 19 C 0.18 1.55 13.19 51.96 0.69 2.23 15 20 N -0.46 -6.12 11.06 -11.48 -0.13 -6.25 15 21 H 0.27 6.94 8.31 -40.82 -0.34 6.60 15 22 H 0.40 9.48 7.90 -40.82 -0.32 9.16 15 23 H 0.09 1.55 8.14 -51.93 -0.42 1.13 15 24 H 0.09 1.55 8.14 -51.93 -0.42 1.12 15 25 H 0.42 8.01 7.17 -40.82 -0.29 7.72 15 26 H 0.23 1.72 8.06 -52.49 -0.42 1.29 15 27 H 0.26 0.87 8.06 -52.49 -0.42 0.45 15 LS Contribution 260.71 15.07 3.93 3.93 Total: -1.00 -33.20 260.71 -2.47 -35.67 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: -1.82 Total: 13.17 kcal Atomic # 6 Polarization: 15.24 SS G_CDS: 0.01 Total: 15.25 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.19 Total: -56.23 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: 0.24 Total: -27.46 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.20 -2.47 -35.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328649999.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.924 kcal (2) G-P(sol) polarization free energy of solvation -33.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds