Wall clock time and date at job start Sun Mar 29 2020 21:56:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86796 * 120.00305 * 2 1 4 4 H 1.48508 * 109.47139 * 270.00230 * 3 2 1 5 5 H 1.48498 * 109.47081 * 29.99932 * 3 2 1 6 6 H 1.48498 * 109.47341 * 150.00366 * 3 2 1 7 7 C 1.38948 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00141 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00138 * 359.97438 * 7 2 1 10 10 C 1.34777 * 119.99907 * 179.97438 * 9 7 2 11 11 O 1.21291 * 120.00036 * 359.97438 * 10 9 7 12 12 C 1.50699 * 119.99952 * 180.02562 * 10 9 7 13 13 N 1.46497 * 109.47387 * 180.02562 * 12 10 9 14 14 C 1.34772 * 120.00271 * 179.97438 * 13 12 10 15 15 O 1.21617 * 120.00267 * 0.02562 * 14 13 12 16 16 C 1.47424 * 120.00245 * 179.97438 * 14 13 12 17 17 C 1.36093 * 126.44986 * 180.02562 * 16 14 13 18 18 O 1.34255 * 106.94938 * 180.24817 * 17 16 14 19 19 C 1.34053 * 108.22576 * 359.57524 * 18 17 16 20 20 N 1.29935 * 109.24194 * 0.43696 * 19 18 17 21 21 H 0.96997 * 119.99584 * 359.97438 * 1 2 3 22 22 H 0.96992 * 119.99997 * 0.02562 * 9 7 2 23 23 H 1.09001 * 109.47321 * 60.00072 * 12 10 9 24 24 H 1.09006 * 109.47355 * 300.00011 * 12 10 9 25 25 H 0.97003 * 120.00004 * 0.02562 * 13 12 10 26 26 H 1.08002 * 126.52257 * 359.97438 * 17 16 14 27 27 H 1.08002 * 125.38217 * 180.13441 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4957 2.0464 -1.4001 5 1 1.4457 2.6526 0.7000 6 1 3.5458 1.4400 0.6999 7 6 2.0088 -1.2034 -0.0005 8 1 3.0888 -1.2035 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0016 11 8 3.2101 -3.5579 -0.0030 12 6 1.2436 -4.8629 -0.0022 13 7 2.1955 -5.9765 -0.0027 14 6 1.7463 -7.2471 -0.0027 15 8 0.5506 -7.4694 -0.0028 16 6 2.7042 -8.3677 -0.0038 17 6 2.3975 -9.6937 -0.0044 18 8 3.5604 -10.3644 0.0002 19 6 4.5598 -9.4709 -0.0058 20 7 4.0614 -8.2710 -0.0046 21 1 -0.4849 0.8401 0.0004 22 1 0.3534 -2.3906 -0.0005 23 1 0.6166 -4.9201 -0.8919 24 1 0.6173 -4.9213 0.8881 25 1 3.1492 -5.7993 -0.0022 26 1 1.4070 -10.1243 -0.0039 27 1 5.6129 -9.7106 -0.0061 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328649999.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:55 Heat of formation + Delta-G solvation = -79.092918 kcal Electronic energy + Delta-G solvation = -15906.281448 eV Core-core repulsion = 12857.849842 eV Total energy + Delta-G solvation = -3048.431606 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -44.37543 -40.94010 -39.84879 -36.29605 -35.88757 -35.28632 -33.39406 -31.49556 -29.48296 -26.70486 -24.72928 -23.58578 -21.65434 -21.40514 -20.16541 -19.58419 -17.91993 -17.72382 -17.23806 -17.02464 -16.71087 -16.40032 -15.96125 -15.56598 -15.44555 -15.02683 -14.49181 -13.97629 -13.67258 -13.55839 -12.92089 -12.47111 -12.42407 -12.13097 -11.83839 -11.58775 -11.45485 -10.59468 -10.39648 -10.13344 -10.06952 -8.52254 -6.02575 0.10206 1.07294 1.35652 1.42225 1.54882 1.71145 1.87945 2.01048 2.20600 2.30540 3.05746 3.13330 3.14591 3.79602 3.89334 4.20097 4.37218 4.38600 4.54228 4.68202 5.15159 5.18180 5.37228 5.89889 6.26057 6.46945 6.59308 6.97106 7.02412 7.41705 7.92957 8.64622 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.062534 B = 0.004300 C = 0.004032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.648558 B = 6510.615331 C = 6943.118698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.339 4.339 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.430 3.570 11 O -0.625 6.625 12 C 0.120 3.880 13 N -0.696 5.696 14 C 0.598 3.402 15 O -0.568 6.568 16 C -0.111 4.111 17 C 0.041 3.959 18 O -0.195 6.195 19 C 0.201 3.799 20 N -0.509 5.509 21 H 0.280 0.720 22 H 0.400 0.600 23 H 0.101 0.899 24 H 0.101 0.899 25 H 0.416 0.584 26 H 0.258 0.742 27 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.390 -17.552 -0.014 18.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.468 4.468 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.217 3.783 11 O -0.513 6.513 12 C -0.007 4.007 13 N -0.348 5.348 14 C 0.385 3.615 15 O -0.448 6.448 16 C -0.229 4.229 17 C -0.034 4.034 18 O -0.080 6.080 19 C -0.028 4.028 20 N -0.238 5.238 21 H 0.090 0.910 22 H 0.234 0.766 23 H 0.119 0.881 24 H 0.119 0.881 25 H 0.254 0.746 26 H 0.274 0.726 27 H 0.319 0.681 Dipole moment (debyes) X Y Z Total from point charges 4.547 -16.940 -0.007 17.539 hybrid contribution -0.172 0.609 -0.004 0.632 sum 4.375 -16.331 -0.011 16.907 Atomic orbital electron populations 1.69679 1.06961 1.29688 1.49134 1.26139 0.96579 1.02669 0.95702 0.84856 0.77885 0.76418 0.78745 1.19508 1.19474 1.19557 1.19735 0.92951 0.83562 1.50527 0.89721 1.41817 1.09603 1.04493 1.63343 1.20408 0.88112 0.85977 0.83764 1.90493 1.15331 1.87496 1.57978 1.20884 0.91466 0.83569 1.04825 1.45577 1.11858 1.04445 1.72910 1.17073 0.86680 0.81814 0.75897 1.90783 1.15949 1.85094 1.53023 1.21564 0.90942 0.94662 1.15704 1.25736 0.90988 0.89613 0.97044 1.84500 1.15076 1.39668 1.68728 1.29228 0.96914 0.79848 0.96769 1.70785 1.07074 1.27213 1.18701 0.91002 0.76567 0.88075 0.88090 0.74582 0.72634 0.68138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.82 13.05 21.66 0.28 -48.54 15 2 C -0.01 -0.53 5.50 84.93 0.47 -0.07 15 3 Si 1.00 42.17 29.55 68.60 2.03 44.20 15 4 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 15 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 15 7 C -0.34 -18.97 9.68 84.04 0.81 -18.15 15 8 H 0.08 5.01 7.16 -2.91 -0.02 4.99 15 9 N -0.56 -28.51 5.29 -306.99 -1.62 -30.14 15 10 C 0.43 20.64 7.85 87.66 0.69 21.33 15 11 O -0.62 -34.02 15.24 -3.06 -0.05 -34.06 15 12 C 0.12 4.57 6.15 85.63 0.53 5.09 15 13 N -0.70 -25.60 5.52 -470.10 -2.60 -28.20 15 14 C 0.60 20.19 7.81 86.66 0.68 20.87 15 15 O -0.57 -20.77 16.89 -4.08 -0.07 -20.84 15 16 C -0.11 -3.01 6.99 40.41 0.28 -2.72 15 17 C 0.04 0.76 11.95 67.32 0.80 1.57 15 18 O -0.19 -2.96 10.73 0.37 0.00 -2.95 15 19 C 0.20 2.95 13.19 130.52 1.72 4.67 15 20 N -0.51 -12.90 11.06 -305.14 -3.37 -16.27 15 21 H 0.28 13.97 8.31 -92.71 -0.77 13.19 15 22 H 0.40 19.47 7.90 -92.71 -0.73 18.74 15 23 H 0.10 3.57 8.14 -2.39 -0.02 3.55 15 24 H 0.10 3.57 8.14 -2.38 -0.02 3.55 15 25 H 0.42 16.24 7.17 -92.71 -0.66 15.58 15 26 H 0.26 3.08 8.06 -2.91 -0.02 3.06 15 27 H 0.30 0.76 8.06 -2.91 -0.02 0.74 15 Total: -1.00 -72.46 260.71 0.43 -72.02 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -0.15 Total: 32.19 kcal Atomic # 6 Polarization: 26.60 SS G_CDS: 5.98 Total: 32.59 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -7.31 Total: -123.15 kcal Atomic # 8 Polarization: -57.74 SS G_CDS: -0.11 Total: -57.85 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -72.46 0.43 -72.02 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328649999.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.068 kcal (2) G-P(sol) polarization free energy of solvation -72.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds