Wall clock time and date at job start Sun Mar 29 2020 22:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00143 * 2 1 4 4 H 1.48500 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46900 * 299.99700 * 3 2 1 6 6 H 1.48501 * 109.47348 * 59.99746 * 3 2 1 7 7 C 1.37885 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99773 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50867 * 300.07904 * 9 7 2 11 11 C 1.53120 * 109.50204 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.38694 * 111.00126 * 185.84198 * 14 13 12 16 16 N 1.30242 * 126.16678 * 236.07131 * 15 14 13 17 17 N 1.26099 * 117.62198 * 179.97438 * 16 15 14 18 18 C 1.29320 * 117.97227 * 359.97438 * 17 16 15 19 19 S 1.76486 * 107.86463 * 359.75793 * 18 17 16 20 20 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 21 21 H 0.97003 * 120.00294 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 23 23 H 1.09002 * 109.52444 * 302.31431 * 11 9 7 24 24 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 25 25 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 26 26 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 27 27 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 28 28 H 1.08000 * 126.06749 * 180.02562 * 18 17 16 29 29 H 1.08993 * 109.46639 * 178.24333 * 20 14 13 30 30 H 1.09006 * 109.45299 * 58.27214 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6233 -2.5563 0.8910 11 6 2.2453 -3.6636 0.0015 12 6 1.4727 -4.9842 -0.0581 13 6 0.5890 -4.9967 -1.3075 14 7 -0.3448 -3.8644 -1.2595 15 6 -1.2476 -3.9197 -2.3110 16 7 -1.4559 -2.9862 -3.1950 17 7 -2.3193 -3.2079 -4.0870 18 6 -2.9372 -4.3437 -4.0641 19 16 -2.3149 -5.2711 -2.6975 20 6 0.3736 -2.5837 -1.2495 21 1 -0.4851 0.8400 -0.0004 22 1 2.8432 -3.6322 0.9122 23 1 2.8988 -3.5844 -0.8673 24 1 0.8483 -5.0810 0.8301 25 1 2.1760 -5.8157 -0.1016 26 1 1.2149 -4.9138 -2.1960 27 1 0.0267 -5.9297 -1.3454 28 1 -3.6959 -4.6689 -4.7604 29 1 -0.3449 -1.7642 -1.2452 30 1 1.0007 -2.5122 -2.1382 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336401439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:09 Heat of formation + Delta-G solvation = 64.768116 kcal Electronic energy + Delta-G solvation = -15131.594417 eV Core-core repulsion = 12667.987059 eV Total energy + Delta-G solvation = -2463.607358 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.64814 -38.47278 -33.99232 -32.56294 -30.01015 -29.59099 -25.94448 -25.18329 -23.35024 -21.85922 -20.02835 -18.81446 -18.51734 -16.92740 -16.04712 -15.30002 -14.64872 -14.47764 -14.13462 -13.56075 -13.31968 -13.07940 -12.73011 -12.37625 -12.01381 -11.05002 -10.95693 -10.61980 -10.44439 -10.41020 -10.16896 -10.11023 -9.77716 -9.60375 -9.37875 -9.15777 -8.99161 -8.42912 -7.90542 -6.05163 -4.12852 0.82893 1.09704 1.63077 3.00621 3.29352 3.37941 3.40569 3.96189 4.40696 4.76836 5.11630 5.26349 5.32073 5.40771 5.59232 5.69748 5.85198 6.13762 6.24568 6.42005 6.53236 6.68715 6.79231 6.93657 7.20036 7.44158 7.66147 7.84733 8.00657 8.34088 8.91086 9.05009 9.53384 11.00863 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.008087 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.959150 B = 3461.302499 C = 4239.976083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.064 3.936 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.518 4.518 8 H 0.060 0.940 9 C 0.052 3.948 10 H 0.037 0.963 11 C -0.116 4.116 12 C -0.116 4.116 13 C 0.061 3.939 14 N -0.439 5.439 15 C 0.253 3.747 16 N -0.311 5.311 17 N -0.238 5.238 18 C -0.029 4.029 19 S 0.014 5.986 20 C 0.068 3.932 21 H 0.263 0.737 22 H 0.057 0.943 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.048 0.952 27 H 0.070 0.930 28 H 0.210 0.790 29 H 0.123 0.877 30 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.602 -11.865 -3.984 12.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.139 4.139 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.557 4.557 8 H 0.078 0.922 9 C 0.033 3.967 10 H 0.056 0.944 11 C -0.154 4.154 12 C -0.154 4.154 13 C -0.065 4.065 14 N -0.159 5.159 15 C -0.118 4.118 16 N -0.155 5.155 17 N -0.071 5.071 18 C -0.333 4.333 19 S 0.251 5.749 20 C -0.058 4.058 21 H 0.073 0.927 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.227 0.773 29 H 0.141 0.859 30 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.908 -11.479 -3.643 12.390 hybrid contribution 0.492 0.923 -0.598 1.205 sum -2.416 -10.556 -4.241 11.630 Atomic orbital electron populations 1.69842 1.05896 1.26801 1.49511 1.25030 0.94885 0.99360 0.94627 0.86513 0.80068 0.83647 0.77674 1.19736 1.20900 1.20951 1.21120 0.93006 0.90004 1.51586 0.92153 1.18787 0.92114 0.92353 0.93478 0.94443 1.21753 0.98659 0.94108 1.00870 1.21657 0.97829 0.99200 0.96691 1.22353 0.93443 0.91049 0.99698 1.59094 1.17438 1.08957 1.30452 1.28601 0.99557 0.90874 0.92766 1.71718 1.15970 1.26305 1.01475 1.70749 1.03467 1.16050 1.16838 1.30702 1.07431 0.93577 1.01613 1.85571 1.37394 1.22328 1.29632 1.22893 0.97949 0.85425 0.99540 0.92690 0.92450 0.93173 0.91184 0.91807 0.93358 0.91123 0.77346 0.85868 0.94843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.27 11.34 55.43 0.63 -24.64 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 4 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -13.86 8.56 -34.44 -0.29 -14.16 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.05 1.26 2.26 -91.69 -0.21 1.05 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.12 -2.26 5.22 -26.61 -0.14 -2.40 16 12 C -0.12 -1.84 6.09 -26.65 -0.16 -2.01 16 13 C 0.06 1.01 5.36 -3.83 -0.02 0.99 16 14 N -0.44 -8.90 4.72 -173.48 -0.82 -9.72 16 15 C 0.25 4.94 7.04 -87.15 -0.61 4.33 16 16 N -0.31 -6.72 10.59 31.00 0.33 -6.39 16 17 N -0.24 -4.49 11.55 30.50 0.35 -4.13 16 18 C -0.03 -0.41 12.68 51.70 0.66 0.24 16 19 S 0.01 0.20 22.77 -107.50 -2.45 -2.24 16 20 C 0.07 1.63 3.92 -3.83 -0.02 1.61 16 21 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 22 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 23 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 24 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.99 7.45 -51.93 -0.39 0.60 16 28 H 0.21 1.89 8.06 -52.49 -0.42 1.47 16 29 H 0.12 3.42 5.88 -51.93 -0.31 3.12 16 30 H 0.03 0.83 8.14 -51.93 -0.42 0.40 16 LS Contribution 262.72 15.07 3.96 3.96 Total: -1.00 -29.84 262.72 -7.53 -37.37 By element: Atomic # 1 Polarization: 1.94 SS G_CDS: -3.62 Total: -1.68 kcal Atomic # 6 Polarization: -7.81 SS G_CDS: -0.89 Total: -8.70 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 0.49 Total: -44.88 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 0.20 SS G_CDS: -2.45 Total: -2.24 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.84 -7.53 -37.37 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336401439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.137 kcal (2) G-P(sol) polarization free energy of solvation -29.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds