Wall clock time and date at job start Sun Mar 29 2020 22:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86797 * 120.00143 * 2 1 4 4 H 1.48500 * 109.47107 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.46900 * 299.99700 * 3 2 1 6 6 H 1.48501 * 109.47348 * 59.99746 * 3 2 1 7 7 C 1.37885 * 119.99947 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99760 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99773 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.50867 * 300.07904 * 9 7 2 11 11 C 1.53120 * 109.50204 * 179.97438 * 9 7 2 12 12 C 1.53114 * 109.16161 * 182.40736 * 11 9 7 13 13 C 1.53036 * 109.27799 * 57.65854 * 12 11 9 14 14 N 1.46850 * 109.52384 * 300.81924 * 13 12 11 15 15 C 1.38694 * 111.00126 * 185.84198 * 14 13 12 16 16 N 1.30242 * 126.16678 * 236.07131 * 15 14 13 17 17 N 1.26099 * 117.62198 * 179.97438 * 16 15 14 18 18 C 1.29320 * 117.97227 * 359.97438 * 17 16 15 19 19 S 1.76486 * 107.86463 * 359.75793 * 18 17 16 20 20 C 1.46846 * 111.19870 * 61.74019 * 14 13 12 21 21 H 0.97003 * 120.00294 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.52336 * 62.50472 * 11 9 7 23 23 H 1.09002 * 109.52444 * 302.31431 * 11 9 7 24 24 H 1.09004 * 109.50600 * 297.71890 * 12 11 9 25 25 H 1.08997 * 109.50718 * 177.59550 * 12 11 9 26 26 H 1.08995 * 109.46942 * 60.83456 * 13 12 11 27 27 H 1.08998 * 109.46530 * 180.80782 * 13 12 11 28 28 H 1.08000 * 126.06749 * 180.02562 * 18 17 16 29 29 H 1.08993 * 109.46639 * 178.24333 * 20 14 13 30 30 H 1.09006 * 109.45299 * 58.27214 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0017 10 1 0.6233 -2.5563 0.8910 11 6 2.2453 -3.6636 0.0015 12 6 1.4727 -4.9842 -0.0581 13 6 0.5890 -4.9967 -1.3075 14 7 -0.3448 -3.8644 -1.2595 15 6 -1.2476 -3.9197 -2.3110 16 7 -1.4559 -2.9862 -3.1950 17 7 -2.3193 -3.2079 -4.0870 18 6 -2.9372 -4.3437 -4.0641 19 16 -2.3149 -5.2711 -2.6975 20 6 0.3736 -2.5837 -1.2495 21 1 -0.4851 0.8400 -0.0004 22 1 2.8432 -3.6322 0.9122 23 1 2.8988 -3.5844 -0.8673 24 1 0.8483 -5.0810 0.8301 25 1 2.1760 -5.8157 -0.1016 26 1 1.2149 -4.9138 -2.1960 27 1 0.0267 -5.9297 -1.3454 28 1 -3.6959 -4.6689 -4.7604 29 1 -0.3449 -1.7642 -1.2452 30 1 1.0007 -2.5122 -2.1382 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336401439.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:09 Heat of formation + Delta-G solvation = 44.505098 kcal Electronic energy + Delta-G solvation = -15132.473087 eV Core-core repulsion = 12667.987059 eV Total energy + Delta-G solvation = -2464.486028 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.03939 -39.99442 -35.75187 -34.25396 -31.66859 -31.08296 -27.38697 -27.06199 -24.85042 -23.48459 -21.44982 -20.36842 -19.90730 -18.60824 -17.82881 -16.72408 -16.51087 -15.97529 -15.54012 -15.08111 -14.80169 -14.52574 -14.35896 -14.03473 -13.58347 -12.92981 -12.68512 -12.34119 -12.24160 -11.90853 -11.82323 -11.45688 -11.32531 -11.08819 -10.92880 -10.82754 -10.58368 -10.48850 -9.39473 -8.13318 -6.28163 -0.43334 -0.18769 0.37563 1.38809 1.41181 1.52133 1.66348 2.40128 2.59117 3.15953 3.56078 3.86078 4.00569 4.04712 4.28547 4.41859 4.58276 4.68385 4.76564 4.81034 4.95801 5.14268 5.22729 5.25763 5.57421 5.61666 5.84972 5.93413 6.03979 6.33195 6.84288 7.41578 7.72875 8.91063 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.028950 B = 0.008087 C = 0.006602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.959150 B = 3461.302499 C = 4239.976083 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.012 3.988 3 Si 0.954 3.046 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.279 1.279 7 C -0.534 4.534 8 H 0.061 0.939 9 C 0.047 3.953 10 H 0.005 0.995 11 C -0.111 4.111 12 C -0.107 4.107 13 C 0.057 3.943 14 N -0.451 5.451 15 C 0.210 3.790 16 N -0.360 5.360 17 N -0.285 5.285 18 C -0.003 4.003 19 S 0.103 5.897 20 C 0.093 3.907 21 H 0.260 0.740 22 H 0.062 0.938 23 H 0.049 0.951 24 H 0.069 0.931 25 H 0.106 0.894 26 H 0.047 0.953 27 H 0.103 0.897 28 H 0.263 0.737 29 H 0.079 0.921 30 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.849 -14.352 -4.551 15.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.187 4.187 3 Si 0.780 3.220 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.573 4.573 8 H 0.079 0.921 9 C 0.028 3.972 10 H 0.023 0.977 11 C -0.149 4.149 12 C -0.145 4.145 13 C -0.068 4.068 14 N -0.171 5.171 15 C -0.161 4.161 16 N -0.203 5.203 17 N -0.117 5.117 18 C -0.306 4.306 19 S 0.340 5.660 20 C -0.035 4.035 21 H 0.069 0.931 22 H 0.081 0.919 23 H 0.068 0.932 24 H 0.088 0.912 25 H 0.124 0.876 26 H 0.065 0.935 27 H 0.122 0.878 28 H 0.279 0.721 29 H 0.097 0.903 30 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -3.150 -13.989 -4.215 14.946 hybrid contribution 0.425 1.545 -0.514 1.683 sum -2.725 -12.444 -4.729 13.588 Atomic orbital electron populations 1.70017 1.07334 1.27163 1.50760 1.25825 0.95605 1.02744 0.94550 0.85555 0.79344 0.79669 0.77433 1.18550 1.21232 1.20433 1.21547 0.93283 0.91561 1.50880 0.92113 1.18737 0.92711 0.93576 0.92158 0.97690 1.21639 0.97832 0.94325 1.01069 1.21638 0.98109 0.98263 0.96480 1.22554 0.93458 0.90942 0.99872 1.59078 1.18112 1.08161 1.31798 1.28739 1.00834 0.93460 0.93088 1.71651 1.17412 1.28547 1.02727 1.70709 1.05055 1.18568 1.17418 1.31713 1.05769 0.91869 1.01277 1.85187 1.34424 1.18336 1.28014 1.22179 0.96497 0.86742 0.98088 0.93099 0.91917 0.93245 0.91195 0.87554 0.93466 0.87849 0.72142 0.90279 0.97150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.92 11.34 21.45 0.24 -54.68 16 2 C 0.01 0.69 5.30 84.66 0.45 1.14 16 3 Si 0.95 44.68 29.54 68.60 2.03 46.70 16 4 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 6 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 7 C -0.53 -29.54 8.56 25.60 0.22 -29.32 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 9 C 0.05 2.38 2.26 -11.49 -0.03 2.35 16 10 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 11 C -0.11 -4.28 5.22 30.67 0.16 -4.12 16 12 C -0.11 -3.18 6.09 30.64 0.19 -2.99 16 13 C 0.06 1.79 5.36 86.32 0.46 2.25 16 14 N -0.45 -18.41 4.72 -702.77 -3.32 -21.73 16 15 C 0.21 8.15 7.04 179.13 1.26 9.41 16 16 N -0.36 -15.88 10.59 -55.85 -0.59 -16.48 16 17 N -0.29 -10.58 11.55 -57.40 -0.66 -11.24 16 18 C 0.00 -0.06 12.68 130.61 1.66 1.59 16 19 S 0.10 2.62 22.77 -56.49 -1.29 1.34 16 20 C 0.09 4.67 3.92 86.33 0.34 5.01 16 21 H 0.26 15.01 8.31 -92.71 -0.77 14.23 16 22 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.07 2.09 8.14 -2.39 -0.02 2.08 16 25 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.10 2.51 7.45 -2.39 -0.02 2.50 16 28 H 0.26 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.08 4.69 5.88 -2.39 -0.01 4.68 16 30 H 0.01 0.54 8.14 -2.38 -0.02 0.52 16 Total: -1.00 -70.04 262.72 2.25 -67.78 By element: Atomic # 1 Polarization: 1.84 SS G_CDS: 1.14 Total: 2.98 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.71 Total: -14.68 kcal Atomic # 7 Polarization: -99.79 SS G_CDS: -4.33 Total: -104.12 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.70 kcal Atomic # 16 Polarization: 2.62 SS G_CDS: -1.29 Total: 1.34 kcal Total: -70.04 2.25 -67.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336401439.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.289 kcal (2) G-P(sol) polarization free energy of solvation -70.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds