Wall clock time and date at job start Sun Mar 29 2020 21:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00173 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00363 * 3 2 1 6 6 H 1.48499 * 109.46749 * 150.00419 * 3 2 1 7 7 C 1.38767 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99916 * 0.26665 * 7 2 1 9 9 O 1.34884 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.34796 * 116.99752 * 179.97438 * 9 7 2 11 11 O 1.21565 * 120.00457 * 359.97438 * 10 9 7 12 12 C 1.47193 * 119.99825 * 180.02562 * 10 9 7 13 13 C 1.47067 * 127.20651 * 0.02562 * 12 10 9 14 14 C 1.34150 * 105.95767 * 180.02562 * 13 12 10 15 15 O 1.34227 * 109.15397 * 0.02562 * 14 13 12 16 16 C 1.33643 * 110.92565 * 359.71968 * 15 14 13 17 17 C 1.50693 * 125.81443 * 180.30642 * 16 15 14 18 18 C 1.50698 * 109.47298 * 270.16858 * 17 16 15 19 19 N 1.34783 * 120.00385 * 179.97438 * 18 17 16 20 20 O 1.21283 * 119.99944 * 0.02562 * 18 17 16 21 21 H 0.97005 * 119.99614 * 359.97438 * 1 2 3 22 22 H 1.08001 * 127.01943 * 0.02562 * 13 12 10 23 23 H 1.08001 * 125.42410 * 180.02562 * 14 13 12 24 24 H 1.08999 * 109.47100 * 30.16701 * 17 16 15 25 25 H 1.08995 * 109.47079 * 150.17179 * 17 16 15 26 26 H 0.97003 * 119.99279 * 0.02562 * 19 18 17 27 27 H 0.96993 * 120.00022 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4460 2.6526 0.7001 6 1 3.5460 1.4400 0.7000 7 6 2.0082 -1.2018 -0.0005 8 1 1.4681 -2.1371 -0.0053 9 8 3.3570 -1.2019 -0.0011 10 6 3.9689 -2.4030 -0.0010 11 8 3.3068 -3.4225 -0.0001 12 6 5.4388 -2.4801 -0.0010 13 6 6.3882 -1.3570 -0.0005 14 6 7.6113 -1.9080 -0.0013 15 8 7.4921 -3.2450 -0.0028 16 6 6.2063 -3.6095 0.0031 17 6 5.6912 -5.0256 0.0100 18 6 5.5184 -5.5043 -1.4085 19 7 5.0658 -6.7509 -1.6487 20 8 5.7875 -4.7680 -2.3339 21 1 -0.4850 0.8401 0.0004 22 1 6.1495 -0.3037 0.0003 23 1 8.5436 -1.3627 -0.0008 24 1 6.4038 -5.6689 0.5262 25 1 4.7311 -5.0605 0.5247 26 1 4.8510 -7.3398 -0.9085 27 1 4.9550 -7.0590 -2.5617 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001341118875.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:28 Heat of formation + Delta-G solvation = -101.209385 kcal Electronic energy + Delta-G solvation = -16714.383646 eV Core-core repulsion = 13632.700247 eV Total energy + Delta-G solvation = -3081.683399 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.27764 -39.21664 -38.88241 -35.37743 -33.62807 -32.66990 -32.27113 -31.75085 -27.53743 -25.65651 -22.90800 -21.38162 -20.63195 -19.07328 -17.95900 -17.70771 -17.12455 -16.81154 -15.73416 -15.60441 -15.09471 -14.70671 -14.45705 -14.14091 -13.61981 -13.36458 -12.73032 -12.57162 -12.34857 -12.02286 -11.52408 -11.30897 -10.52343 -10.38294 -9.97501 -9.69582 -9.64363 -9.41735 -9.23482 -8.67167 -8.35507 -6.37410 -4.09451 1.63634 2.41132 2.75044 2.95743 3.22711 3.26720 3.39117 3.64287 4.01803 4.21337 4.28493 4.61900 5.01097 5.07366 5.15403 5.28318 5.49802 5.76191 5.86401 6.19541 6.47926 6.66526 6.80638 7.28687 7.33278 7.73760 8.04381 8.32616 8.61977 9.01041 9.71195 10.70726 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.007834 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.427567 B = 3573.507006 C = 4303.211998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.066 3.934 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.259 1.259 7 C -0.375 4.375 8 H 0.111 0.889 9 O -0.240 6.240 10 C 0.482 3.518 11 O -0.543 6.543 12 C -0.174 4.174 13 C -0.173 4.173 14 C -0.046 4.046 15 O -0.173 6.173 16 C 0.066 3.934 17 C -0.066 4.066 18 C 0.529 3.471 19 N -0.855 5.855 20 O -0.533 6.533 21 H 0.280 0.720 22 H 0.160 0.840 23 H 0.207 0.793 24 H 0.111 0.889 25 H 0.144 0.856 26 H 0.401 0.599 27 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.010 -8.471 1.521 16.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.138 4.138 3 Si 0.730 3.270 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.183 1.183 7 C -0.451 4.451 8 H 0.128 0.872 9 O -0.148 6.148 10 C 0.330 3.670 11 O -0.440 6.440 12 C -0.177 4.177 13 C -0.193 4.193 14 C -0.112 4.112 15 O -0.070 6.070 16 C 0.014 3.986 17 C -0.105 4.105 18 C 0.313 3.687 19 N -0.419 5.419 20 O -0.408 6.408 21 H 0.090 0.910 22 H 0.177 0.823 23 H 0.224 0.776 24 H 0.129 0.871 25 H 0.162 0.838 26 H 0.230 0.770 27 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 14.099 -8.138 1.051 16.313 hybrid contribution -0.132 0.611 -0.065 0.628 sum 13.967 -7.528 0.986 15.897 Atomic orbital electron populations 1.69608 1.05699 1.28464 1.47340 1.24543 0.95021 0.98716 0.95558 0.86218 0.80376 0.81404 0.79036 1.19761 1.20716 1.18270 1.20693 0.76124 0.97051 1.51189 0.87165 1.83570 1.23860 1.30713 1.76707 1.19363 0.86149 0.82688 0.78804 1.90609 1.66270 1.35956 1.51164 1.20443 0.92300 0.92870 1.12103 1.22972 0.91212 1.00105 1.04969 1.23749 0.99952 0.79634 1.07817 1.83661 1.26860 1.24666 1.71824 1.21461 0.80587 0.94753 1.01786 1.20263 1.04923 0.89093 0.96244 1.20229 0.75935 0.81535 0.90995 1.43698 1.70483 1.15466 1.12245 1.90781 1.49605 1.54412 1.45986 0.90986 0.82275 0.77642 0.87115 0.83796 0.77033 0.76733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.09 13.96 55.48 0.77 -25.32 15 2 C 0.07 1.91 5.49 -17.52 -0.10 1.82 15 3 Si 0.90 21.87 28.62 -169.99 -4.86 17.01 15 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 15 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 15 6 H -0.26 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.38 -11.45 10.11 30.93 0.31 -11.13 15 8 H 0.11 3.65 7.09 -52.48 -0.37 3.28 15 9 O -0.24 -6.73 8.49 -21.90 -0.19 -6.91 15 10 C 0.48 12.36 7.89 34.37 0.27 12.63 15 11 O -0.54 -14.51 14.10 -19.32 -0.27 -14.78 15 12 C -0.17 -3.67 6.32 -103.29 -0.65 -4.33 15 13 C -0.17 -3.05 11.05 -37.44 -0.41 -3.46 15 14 C -0.05 -0.65 12.03 29.29 0.35 -0.30 15 15 O -0.17 -2.75 10.52 7.64 0.08 -2.67 15 16 C 0.07 1.18 5.87 -34.92 -0.21 0.98 15 17 C -0.07 -0.94 5.70 -29.04 -0.17 -1.11 15 18 C 0.53 8.27 8.09 -10.98 -0.09 8.18 15 19 N -0.85 -8.92 8.87 31.22 0.28 -8.65 15 20 O -0.53 -11.00 16.87 5.55 0.09 -10.90 15 21 H 0.28 7.63 8.31 -40.82 -0.34 7.29 15 22 H 0.16 2.62 8.06 -52.49 -0.42 2.20 15 23 H 0.21 1.85 8.06 -52.49 -0.42 1.42 15 24 H 0.11 1.05 8.14 -51.93 -0.42 0.63 15 25 H 0.14 2.16 6.49 -51.93 -0.34 1.82 15 26 H 0.40 2.71 8.83 -40.82 -0.36 2.35 15 27 H 0.40 3.76 8.93 -40.82 -0.36 3.40 15 LS Contribution 259.22 15.07 3.91 3.91 Total: -1.00 -37.77 259.22 -2.71 -40.49 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -1.84 Total: 4.54 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -0.69 Total: 3.29 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 1.05 Total: -33.97 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -0.28 Total: -35.27 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.86 Total: 17.01 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -37.77 -2.71 -40.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341118875.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.722 kcal (2) G-P(sol) polarization free energy of solvation -37.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds