Wall clock time and date at job start Sun Mar 29 2020 21:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31444 * 1 3 3 Si 1.86798 * 120.00084 * 2 1 4 4 H 1.48498 * 109.47175 * 270.00173 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00363 * 3 2 1 6 6 H 1.48499 * 109.46749 * 150.00419 * 3 2 1 7 7 C 1.38767 * 119.99571 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99916 * 0.26665 * 7 2 1 9 9 O 1.34884 * 119.99862 * 179.97438 * 7 2 1 10 10 C 1.34796 * 116.99752 * 179.97438 * 9 7 2 11 11 O 1.21565 * 120.00457 * 359.97438 * 10 9 7 12 12 C 1.47193 * 119.99825 * 180.02562 * 10 9 7 13 13 C 1.47067 * 127.20651 * 0.02562 * 12 10 9 14 14 C 1.34150 * 105.95767 * 180.02562 * 13 12 10 15 15 O 1.34227 * 109.15397 * 0.02562 * 14 13 12 16 16 C 1.33643 * 110.92565 * 359.71968 * 15 14 13 17 17 C 1.50693 * 125.81443 * 180.30642 * 16 15 14 18 18 C 1.50698 * 109.47298 * 270.16858 * 17 16 15 19 19 N 1.34783 * 120.00385 * 179.97438 * 18 17 16 20 20 O 1.21283 * 119.99944 * 0.02562 * 18 17 16 21 21 H 0.97005 * 119.99614 * 359.97438 * 1 2 3 22 22 H 1.08001 * 127.01943 * 0.02562 * 13 12 10 23 23 H 1.08001 * 125.42410 * 180.02562 * 14 13 12 24 24 H 1.08999 * 109.47100 * 30.16701 * 17 16 15 25 25 H 1.08995 * 109.47079 * 150.17179 * 17 16 15 26 26 H 0.97003 * 119.99279 * 0.02562 * 19 18 17 27 27 H 0.96993 * 120.00022 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2485 1.6177 0.0000 4 1 2.4959 2.0464 -1.4001 5 1 1.4460 2.6526 0.7001 6 1 3.5460 1.4400 0.7000 7 6 2.0082 -1.2018 -0.0005 8 1 1.4681 -2.1371 -0.0053 9 8 3.3570 -1.2019 -0.0011 10 6 3.9689 -2.4030 -0.0010 11 8 3.3068 -3.4225 -0.0001 12 6 5.4388 -2.4801 -0.0010 13 6 6.3882 -1.3570 -0.0005 14 6 7.6113 -1.9080 -0.0013 15 8 7.4921 -3.2450 -0.0028 16 6 6.2063 -3.6095 0.0031 17 6 5.6912 -5.0256 0.0100 18 6 5.5184 -5.5043 -1.4085 19 7 5.0658 -6.7509 -1.6487 20 8 5.7875 -4.7680 -2.3339 21 1 -0.4850 0.8401 0.0004 22 1 6.1495 -0.3037 0.0003 23 1 8.5436 -1.3627 -0.0008 24 1 6.4038 -5.6689 0.5262 25 1 4.7311 -5.0605 0.5247 26 1 4.8510 -7.3398 -0.9085 27 1 4.9550 -7.0590 -2.5617 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001341118875.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:27 Heat of formation + Delta-G solvation = -132.166331 kcal Electronic energy + Delta-G solvation = -16715.726039 eV Core-core repulsion = 13632.700247 eV Total energy + Delta-G solvation = -3083.025793 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.61038 -40.98216 -40.42321 -37.45877 -34.78866 -34.56770 -34.02522 -32.98727 -28.98502 -27.64936 -24.64682 -22.64947 -22.04993 -20.67051 -20.06911 -19.22551 -18.42046 -18.06994 -17.44663 -16.97369 -16.51419 -16.43295 -16.26366 -15.87457 -15.05528 -14.73384 -14.54952 -14.01728 -13.92175 -13.79121 -13.36078 -12.78055 -12.46503 -12.32158 -11.88447 -11.31390 -11.23722 -10.90152 -10.83645 -10.71834 -9.67218 -8.58775 -6.43366 0.13266 1.08108 1.29954 1.36740 1.51126 1.54204 1.69672 2.09858 2.24612 2.42739 2.66060 2.92125 3.42322 3.84322 3.97793 4.10689 4.19178 4.44509 4.63866 4.81826 4.92409 5.34583 5.43786 5.83260 5.84392 5.98620 6.37659 6.43958 6.77005 7.27829 7.54118 8.53835 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.007834 C = 0.006505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.427567 B = 3573.507006 C = 4303.211998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.018 3.982 3 Si 0.980 3.020 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.250 1.250 7 C -0.408 4.408 8 H 0.062 0.938 9 O -0.250 6.250 10 C 0.482 3.518 11 O -0.565 6.565 12 C -0.231 4.231 13 C -0.204 4.204 14 C -0.009 4.009 15 O -0.163 6.163 16 C 0.085 3.915 17 C -0.069 4.069 18 C 0.522 3.478 19 N -0.829 5.829 20 O -0.592 6.592 21 H 0.291 0.709 22 H 0.165 0.835 23 H 0.266 0.734 24 H 0.167 0.833 25 H 0.134 0.866 26 H 0.422 0.578 27 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.073 -8.150 1.985 19.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.552 5.552 2 C -0.182 4.182 3 Si 0.799 3.201 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.174 1.174 7 C -0.483 4.483 8 H 0.080 0.920 9 O -0.160 6.160 10 C 0.331 3.669 11 O -0.462 6.462 12 C -0.234 4.234 13 C -0.223 4.223 14 C -0.074 4.074 15 O -0.059 6.059 16 C 0.031 3.969 17 C -0.108 4.108 18 C 0.307 3.693 19 N -0.393 5.393 20 O -0.472 6.472 21 H 0.101 0.899 22 H 0.182 0.818 23 H 0.282 0.718 24 H 0.185 0.815 25 H 0.152 0.848 26 H 0.254 0.746 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 17.140 -7.901 1.542 18.937 hybrid contribution -1.006 0.272 -0.205 1.062 sum 16.134 -7.629 1.337 17.897 Atomic orbital electron populations 1.69692 1.07405 1.30306 1.47778 1.25537 0.96004 1.02598 0.94087 0.85128 0.79213 0.75935 0.79791 1.18686 1.18378 1.17371 1.20392 0.77427 0.96092 1.54423 0.92033 1.83571 1.22257 1.31881 1.78243 1.20352 0.88251 0.81801 0.76470 1.90570 1.67564 1.36436 1.51666 1.20440 0.89973 0.96154 1.16784 1.23134 0.91773 0.99882 1.07464 1.24758 1.00765 0.78556 1.03318 1.83735 1.25412 1.25796 1.70932 1.21934 0.80909 0.95392 0.98627 1.20454 1.05903 0.88449 0.96025 1.20483 0.75621 0.82358 0.90793 1.43497 1.68086 1.14068 1.13681 1.90757 1.52664 1.56278 1.47516 0.89932 0.81782 0.71822 0.81532 0.84796 0.74623 0.75806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.22 13.96 21.63 0.30 -55.92 15 2 C 0.02 1.08 5.49 84.88 0.47 1.55 15 3 Si 0.98 45.20 28.62 68.60 1.96 47.16 15 4 H -0.26 -11.61 7.11 99.48 0.71 -10.90 15 5 H -0.26 -10.95 7.11 99.48 0.71 -10.24 15 6 H -0.25 -11.09 7.11 99.48 0.71 -10.39 15 7 C -0.41 -26.23 10.11 67.95 0.69 -25.55 15 8 H 0.06 4.42 7.09 -2.91 -0.02 4.40 15 9 O -0.25 -14.56 8.49 10.38 0.09 -14.47 15 10 C 0.48 25.70 7.89 70.17 0.55 26.25 15 11 O -0.56 -31.76 14.10 19.62 0.28 -31.49 15 12 C -0.23 -9.70 6.32 -19.00 -0.12 -9.82 15 13 C -0.20 -6.79 11.05 23.65 0.26 -6.53 15 14 C -0.01 -0.22 12.03 66.89 0.80 0.59 15 15 O -0.16 -4.59 10.52 4.44 0.05 -4.54 15 16 C 0.08 2.88 5.87 25.29 0.15 3.03 15 17 C -0.07 -1.86 5.70 29.10 0.17 -1.69 15 18 C 0.52 15.77 8.09 87.66 0.71 16.47 15 19 N -0.83 -15.83 8.87 -173.53 -1.54 -17.37 15 20 O -0.59 -24.40 16.87 -3.04 -0.05 -24.46 15 21 H 0.29 16.07 8.31 -92.70 -0.77 15.30 15 22 H 0.16 5.17 8.06 -2.91 -0.02 5.15 15 23 H 0.27 3.00 8.06 -2.91 -0.02 2.98 15 24 H 0.17 2.48 8.14 -2.39 -0.02 2.47 15 25 H 0.13 3.94 6.49 -2.39 -0.02 3.93 15 26 H 0.42 4.65 8.83 -92.71 -0.82 3.83 15 27 H 0.41 7.04 8.93 -92.71 -0.83 6.21 15 Total: -1.00 -88.40 259.22 4.36 -84.03 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -0.40 Total: 12.74 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: 3.68 Total: 4.30 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.24 Total: -73.29 kcal Atomic # 8 Polarization: -75.31 SS G_CDS: 0.36 Total: -74.95 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 1.96 Total: 47.16 kcal Total: -88.40 4.36 -84.03 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001341118875.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.131 kcal (2) G-P(sol) polarization free energy of solvation -88.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds