Wall clock time and date at job start Sun Mar 29 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00239 * 2 1 4 4 H 1.48500 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 299.99913 * 3 2 1 6 6 H 1.48507 * 109.46907 * 59.99928 * 3 2 1 7 7 C 1.37876 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00184 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.38223 * 313.08422 * 9 7 2 11 11 C 1.53517 * 114.17304 * 179.97438 * 9 7 2 12 12 N 1.47478 * 87.93119 * 220.32854 * 11 9 7 13 13 C 1.39120 * 110.99552 * 138.70094 * 12 11 9 14 14 N 1.32565 * 120.11101 * 0.02562 * 13 12 11 15 15 C 1.32302 * 119.94306 * 179.97438 * 14 13 12 16 16 C 1.38065 * 120.16575 * 0.02562 * 15 14 13 17 17 N 1.32349 * 120.22405 * 0.02562 * 16 15 14 18 18 C 1.32068 * 120.04995 * 359.97438 * 17 16 15 19 19 F 1.35107 * 120.07998 * 179.97438 * 18 17 16 20 20 C 1.47484 * 87.83630 * 27.01426 * 12 11 9 21 21 H 0.96999 * 119.99710 * 0.02562 * 1 2 3 22 22 H 0.96698 * 114.00673 * 46.91624 * 10 9 7 23 23 H 1.08996 * 113.47172 * 105.56119 * 11 9 7 24 24 H 1.08997 * 113.47490 * 335.10045 * 11 9 7 25 25 H 1.08003 * 119.91905 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.88650 * 179.72239 * 16 15 14 27 27 H 1.09000 * 113.48142 * 87.75292 * 20 12 11 28 28 H 1.09004 * 113.47389 * 218.22378 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.1919 -2.5417 0.9601 11 6 2.1496 -3.7439 0.0016 12 7 1.2068 -4.3588 -0.9512 13 6 1.8864 -5.0486 -1.9501 14 7 3.2116 -5.0847 -1.9498 15 6 3.8545 -5.7421 -2.9010 16 6 3.1487 -6.3904 -3.8949 17 7 1.8257 -6.3577 -3.9022 18 6 1.1751 -5.7041 -2.9569 19 9 -0.1756 -5.6699 -2.9640 20 6 0.8545 -2.9972 -1.3952 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3725 -1.7566 0.9577 23 1 2.1871 -4.2524 0.9649 24 1 3.1387 -3.5653 -0.4202 25 1 4.9341 -5.7717 -2.9001 26 1 3.6783 -6.9220 -4.6718 27 1 1.4979 -2.6194 -2.1898 28 1 -0.2058 -2.8731 -1.6156 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348109836.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:36 Heat of formation + Delta-G solvation = 14.140787 kcal Electronic energy + Delta-G solvation = -16998.238721 eV Core-core repulsion = 13966.222821 eV Total energy + Delta-G solvation = -3032.015900 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.77302 -41.19708 -39.11853 -34.90421 -33.68499 -32.16140 -30.94876 -27.70008 -25.61942 -25.13357 -23.92490 -22.47009 -18.94533 -18.14110 -17.94872 -17.67855 -16.30889 -16.19329 -15.17238 -14.97973 -14.58392 -14.19795 -13.99532 -13.46382 -13.28948 -12.87989 -12.27671 -12.08212 -11.72558 -11.43950 -11.10858 -10.97582 -10.87222 -10.47296 -10.22796 -9.62650 -9.37420 -9.14791 -8.75196 -8.40452 -8.00334 -6.37017 -4.46920 0.71407 1.03795 3.14327 3.23539 3.27463 3.36695 3.54373 4.00787 4.19034 4.26466 4.59288 4.86952 5.00152 5.16026 5.46809 5.69379 5.87967 5.95976 6.18147 6.32146 6.61456 6.63677 6.80550 7.14411 7.21981 7.62893 7.66606 7.70536 7.86133 8.56700 9.23808 9.55583 10.69589 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.007274 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.891452 B = 3848.508317 C = 4146.292854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.071 3.929 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.533 4.533 8 H 0.072 0.928 9 C 0.251 3.749 10 O -0.567 6.567 11 C 0.017 3.983 12 N -0.424 5.424 13 C 0.237 3.763 14 N -0.447 5.447 15 C 0.060 3.940 16 C 0.044 3.956 17 N -0.460 5.460 18 C 0.258 3.742 19 F -0.094 7.094 20 C -0.006 4.006 21 H 0.273 0.727 22 H 0.392 0.608 23 H 0.078 0.922 24 H 0.099 0.901 25 H 0.175 0.825 26 H 0.176 0.824 27 H 0.067 0.933 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.888 -7.384 -5.878 11.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.131 4.131 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.209 3.791 10 O -0.380 6.380 11 C -0.111 4.111 12 N -0.144 5.144 13 C 0.000 4.000 14 N -0.166 5.166 15 C -0.100 4.100 16 C -0.115 4.115 17 N -0.180 5.180 18 C 0.097 3.903 19 F -0.073 7.073 20 C -0.132 4.132 21 H 0.083 0.917 22 H 0.249 0.751 23 H 0.096 0.904 24 H 0.117 0.883 25 H 0.192 0.808 26 H 0.193 0.807 27 H 0.086 0.914 28 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.390 -8.276 -5.495 11.302 hybrid contribution 0.450 1.590 -0.697 1.793 sum 5.839 -6.686 -6.192 10.823 Atomic orbital electron populations 1.69292 1.06179 1.28036 1.50226 1.25095 0.95022 0.99906 0.93116 0.86288 0.80095 0.82320 0.77882 1.19428 1.20706 1.20532 1.21552 0.93891 0.89982 1.51690 0.91029 1.19377 0.85070 0.91261 0.83409 1.86052 1.45000 1.48270 1.58667 1.24181 0.96514 0.95012 0.95362 1.66670 1.25952 1.14780 1.06991 1.21766 0.89031 0.96637 0.92579 1.68630 1.07175 1.16095 1.24681 1.23683 1.02087 0.93589 0.90648 1.23343 0.88189 1.00103 0.99843 1.67678 1.10896 1.16152 1.23253 1.18653 0.79798 0.98187 0.93660 1.91654 1.26006 1.94070 1.95604 1.24989 1.01965 0.82692 1.03576 0.91658 0.75134 0.90369 0.88272 0.80756 0.80739 0.91426 0.89900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -23.42 11.02 55.43 0.61 -22.81 15 2 C 0.07 1.82 5.40 -17.82 -0.10 1.72 15 3 Si 0.91 19.86 29.54 -169.99 -5.02 14.83 15 4 H -0.27 -5.85 7.11 56.52 0.40 -5.44 15 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 15 6 H -0.28 -6.10 7.11 56.52 0.40 -5.70 15 7 C -0.53 -13.84 8.68 -34.44 -0.30 -14.14 15 8 H 0.07 1.82 7.81 -52.48 -0.41 1.41 15 9 C 0.25 6.26 1.57 -91.24 -0.14 6.12 15 10 O -0.57 -15.05 13.54 -35.23 -0.48 -15.53 15 11 C 0.02 0.38 6.81 -7.54 -0.05 0.32 15 12 N -0.42 -9.26 6.28 -182.41 -1.14 -10.40 15 13 C 0.24 4.58 5.86 -154.58 -0.91 3.67 15 14 N -0.45 -7.68 8.39 -12.17 -0.10 -7.78 15 15 C 0.06 0.75 11.21 -17.41 -0.20 0.56 15 16 C 0.04 0.53 11.21 -17.39 -0.19 0.33 15 17 N -0.46 -7.37 10.50 -13.23 -0.14 -7.51 15 18 C 0.26 4.76 8.45 -16.94 -0.14 4.62 15 19 F -0.09 -1.82 17.12 2.25 0.04 -1.78 15 20 C -0.01 -0.15 7.07 -7.54 -0.05 -0.20 15 21 H 0.27 6.73 8.31 -40.82 -0.34 6.39 15 22 H 0.39 10.53 6.34 45.56 0.29 10.82 15 23 H 0.08 1.71 8.14 -51.93 -0.42 1.28 15 24 H 0.10 2.11 6.64 -51.93 -0.34 1.77 15 25 H 0.18 1.41 8.06 -52.48 -0.42 0.99 15 26 H 0.18 1.29 8.06 -52.48 -0.42 0.87 15 27 H 0.07 1.55 7.85 -51.93 -0.41 1.14 15 28 H 0.08 1.98 8.14 -51.93 -0.42 1.56 15 LS Contribution 253.29 15.07 3.82 3.82 Total: -1.00 -28.60 253.29 -6.20 -34.80 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -1.70 Total: 9.35 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -2.08 Total: 3.01 kcal Atomic # 7 Polarization: -47.72 SS G_CDS: -0.78 Total: -48.50 kcal Atomic # 8 Polarization: -15.05 SS G_CDS: -0.48 Total: -15.53 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -28.60 -6.20 -34.80 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348109836.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.938 kcal (2) G-P(sol) polarization free energy of solvation -28.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds