Wall clock time and date at job start Sun Mar 29 2020 22:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00239 * 2 1 4 4 H 1.48500 * 109.47353 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47124 * 299.99913 * 3 2 1 6 6 H 1.48507 * 109.46907 * 59.99928 * 3 2 1 7 7 C 1.37876 * 119.99911 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00029 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00184 * 359.97438 * 7 2 1 10 10 O 1.42898 * 113.38223 * 313.08422 * 9 7 2 11 11 C 1.53517 * 114.17304 * 179.97438 * 9 7 2 12 12 N 1.47478 * 87.93119 * 220.32854 * 11 9 7 13 13 C 1.39120 * 110.99552 * 138.70094 * 12 11 9 14 14 N 1.32565 * 120.11101 * 0.02562 * 13 12 11 15 15 C 1.32302 * 119.94306 * 179.97438 * 14 13 12 16 16 C 1.38065 * 120.16575 * 0.02562 * 15 14 13 17 17 N 1.32349 * 120.22405 * 0.02562 * 16 15 14 18 18 C 1.32068 * 120.04995 * 359.97438 * 17 16 15 19 19 F 1.35107 * 120.07998 * 179.97438 * 18 17 16 20 20 C 1.47484 * 87.83630 * 27.01426 * 12 11 9 21 21 H 0.96999 * 119.99710 * 0.02562 * 1 2 3 22 22 H 0.96698 * 114.00673 * 46.91624 * 10 9 7 23 23 H 1.08996 * 113.47172 * 105.56119 * 11 9 7 24 24 H 1.08997 * 113.47490 * 335.10045 * 11 9 7 25 25 H 1.08003 * 119.91905 * 180.02562 * 15 14 13 26 26 H 1.08004 * 119.88650 * 179.72239 * 16 15 14 27 27 H 1.09000 * 113.48142 * 87.75292 * 20 12 11 28 28 H 1.09004 * 113.47389 * 218.22378 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 8 0.1919 -2.5417 0.9601 11 6 2.1496 -3.7439 0.0016 12 7 1.2068 -4.3588 -0.9512 13 6 1.8864 -5.0486 -1.9501 14 7 3.2116 -5.0847 -1.9498 15 6 3.8545 -5.7421 -2.9010 16 6 3.1487 -6.3904 -3.8949 17 7 1.8257 -6.3577 -3.9022 18 6 1.1751 -5.7041 -2.9569 19 9 -0.1756 -5.6699 -2.9640 20 6 0.8545 -2.9972 -1.3952 21 1 -0.4850 0.8401 -0.0004 22 1 -0.3725 -1.7566 0.9577 23 1 2.1871 -4.2524 0.9649 24 1 3.1387 -3.5653 -0.4202 25 1 4.9341 -5.7717 -2.9001 26 1 3.6783 -6.9220 -4.6718 27 1 1.4979 -2.6194 -2.1898 28 1 -0.2058 -2.8731 -1.6156 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348109836.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:36 Heat of formation + Delta-G solvation = -9.246131 kcal Electronic energy + Delta-G solvation = -16999.252854 eV Core-core repulsion = 13966.222821 eV Total energy + Delta-G solvation = -3033.030032 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -50.16446 -42.56377 -40.69722 -36.66182 -35.07619 -34.14982 -32.33364 -29.35517 -27.28080 -26.84944 -25.28065 -23.93028 -20.75391 -19.71922 -19.37368 -19.11903 -17.90887 -17.59064 -17.11468 -16.47087 -15.98730 -15.82414 -15.41377 -14.98623 -14.68041 -14.40949 -14.04132 -13.78627 -13.48855 -13.04542 -12.82695 -12.53569 -12.37085 -12.26323 -12.13430 -11.37375 -10.93298 -10.70857 -10.44132 -10.20404 -9.56651 -8.29945 -6.47987 -0.50313 -0.17244 1.42098 1.45494 1.57130 2.09434 2.34562 2.36948 2.71159 2.92236 3.11652 3.21486 3.79877 3.88525 4.02409 4.16251 4.31690 4.40528 4.48871 4.75098 4.88270 4.97545 5.18742 5.29610 5.70071 5.87886 5.94811 6.05614 6.49434 6.58582 7.25603 7.48287 8.76410 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.035172 B = 0.007274 C = 0.006751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.891452 B = 3848.508317 C = 4146.292854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.028 3.972 3 Si 0.973 3.027 4 H -0.264 1.264 5 H -0.278 1.278 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.227 3.773 10 O -0.580 6.580 11 C 0.031 3.969 12 N -0.434 5.434 13 C 0.201 3.799 14 N -0.465 5.465 15 C 0.075 3.925 16 C 0.075 3.925 17 N -0.472 5.472 18 C 0.232 3.768 19 F -0.112 7.112 20 C 0.006 3.994 21 H 0.276 0.724 22 H 0.387 0.613 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.229 0.771 26 H 0.234 0.766 27 H 0.063 0.937 28 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 -8.101 -7.361 13.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.173 4.173 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.090 0.910 9 C 0.186 3.814 10 O -0.392 6.392 11 C -0.097 4.097 12 N -0.154 5.154 13 C -0.032 4.032 14 N -0.183 5.183 15 C -0.087 4.087 16 C -0.086 4.086 17 N -0.192 5.192 18 C 0.075 3.925 19 F -0.091 7.091 20 C -0.121 4.121 21 H 0.086 0.914 22 H 0.242 0.758 23 H 0.093 0.907 24 H 0.125 0.875 25 H 0.246 0.754 26 H 0.251 0.749 27 H 0.082 0.918 28 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.034 -9.004 -6.959 13.930 hybrid contribution -0.191 1.650 -0.389 1.706 sum 7.843 -7.354 -7.348 13.022 Atomic orbital electron populations 1.69369 1.07347 1.28919 1.50408 1.25867 0.95812 1.02993 0.92582 0.85276 0.78987 0.78182 0.77813 1.18835 1.20348 1.20261 1.21776 0.94046 0.90909 1.52445 0.91003 1.19685 0.85327 0.92402 0.84009 1.86031 1.45550 1.48031 1.59613 1.23993 0.96453 0.93628 0.95582 1.66546 1.26842 1.13982 1.08023 1.21488 0.90113 0.98373 0.93240 1.68575 1.06159 1.17146 1.26431 1.24664 1.04365 0.90972 0.88709 1.24444 0.86766 0.97476 0.99922 1.67816 1.12844 1.16026 1.22514 1.18692 0.79424 0.99733 0.94687 1.91596 1.27280 1.94389 1.95815 1.24633 1.00508 0.84565 1.02385 0.91358 0.75800 0.90682 0.87487 0.75424 0.74938 0.91830 0.91855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.00 11.02 21.45 0.24 -48.76 15 2 C 0.03 1.42 5.40 84.65 0.46 1.87 15 3 Si 0.97 40.65 29.54 68.60 2.03 42.68 15 4 H -0.26 -10.70 7.11 99.48 0.71 -9.99 15 5 H -0.28 -11.38 7.11 99.48 0.71 -10.68 15 6 H -0.28 -11.39 7.11 99.48 0.71 -10.68 15 7 C -0.55 -29.18 8.68 25.60 0.22 -28.96 15 8 H 0.07 3.67 7.81 -2.91 -0.02 3.65 15 9 C 0.23 11.69 1.57 -11.19 -0.02 11.67 15 10 O -0.58 -32.04 13.54 -148.98 -2.02 -34.06 15 11 C 0.03 1.41 6.81 83.58 0.57 1.98 15 12 N -0.43 -19.46 6.28 -731.42 -4.59 -24.05 15 13 C 0.20 7.74 5.86 133.09 0.78 8.52 15 14 N -0.46 -14.92 8.39 -192.42 -1.61 -16.54 15 15 C 0.07 1.51 11.21 84.58 0.95 2.46 15 16 C 0.07 1.41 11.21 84.57 0.95 2.36 15 17 N -0.47 -13.93 10.50 -195.79 -2.06 -15.99 15 18 C 0.23 8.50 8.45 84.99 0.72 9.22 15 19 F -0.11 -4.46 17.12 44.97 0.77 -3.69 15 20 C 0.01 0.29 7.07 83.58 0.59 0.88 15 21 H 0.28 13.81 8.31 -92.71 -0.77 13.04 15 22 H 0.39 21.70 6.34 -74.06 -0.47 21.23 15 23 H 0.07 3.35 8.14 -2.39 -0.02 3.33 15 24 H 0.11 4.56 6.64 -2.39 -0.02 4.54 15 25 H 0.23 2.06 8.06 -2.91 -0.02 2.04 15 26 H 0.23 1.65 8.06 -2.91 -0.02 1.62 15 27 H 0.06 3.03 7.85 -2.39 -0.02 3.01 15 28 H 0.06 3.22 8.14 -2.39 -0.02 3.20 15 Total: -1.00 -64.81 253.29 -1.29 -66.10 By element: Atomic # 1 Polarization: 23.57 SS G_CDS: 0.74 Total: 24.31 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 5.22 Total: 10.00 kcal Atomic # 7 Polarization: -97.31 SS G_CDS: -8.02 Total: -105.34 kcal Atomic # 8 Polarization: -32.04 SS G_CDS: -2.02 Total: -34.06 kcal Atomic # 9 Polarization: -4.46 SS G_CDS: 0.77 Total: -3.69 kcal Atomic # 14 Polarization: 40.65 SS G_CDS: 2.03 Total: 42.68 kcal Total: -64.81 -1.29 -66.10 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348109836.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.855 kcal (2) G-P(sol) polarization free energy of solvation -64.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds