Wall clock time and date at job start Sun Mar 29 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86800 * 119.99772 * 2 1 4 4 H 1.48502 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47156 * 59.99634 * 3 2 1 6 6 H 1.48496 * 109.47163 * 299.99109 * 3 2 1 7 7 C 1.38989 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99532 * 201.00903 * 7 2 1 9 9 N 1.37320 * 120.00351 * 21.01434 * 7 2 1 10 10 C 1.36479 * 126.07169 * 189.74534 * 9 7 2 11 11 C 1.35688 * 107.51031 * 179.83439 * 10 9 7 12 12 N 1.40593 * 126.08330 * 180.11625 * 11 10 9 13 13 C 1.34780 * 119.99816 * 180.32999 * 12 11 10 14 14 O 1.21302 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99884 * 180.02562 * 13 12 11 16 16 H 1.08995 * 115.54737 * 325.67145 * 15 13 12 17 17 C 1.52999 * 117.49723 * 180.02562 * 15 13 12 18 18 C 1.52996 * 117.49590 * 111.37767 * 15 13 12 19 19 H 1.09006 * 117.49666 * 214.97264 * 18 15 13 20 20 F 1.39892 * 117.50296 * 0.02562 * 18 15 13 21 21 C 1.40650 * 107.83233 * 0.42692 * 11 10 9 22 22 N 1.30910 * 108.38496 * 359.72856 * 21 11 10 23 23 H 0.96998 * 119.99559 * 185.86524 * 1 2 3 24 24 H 1.08000 * 126.24737 * 359.97438 * 10 9 7 25 25 H 0.97000 * 120.00442 * 0.33889 * 12 11 10 26 26 H 1.08998 * 117.49849 * 359.97438 * 17 15 13 27 27 H 1.09002 * 117.49562 * 144.99831 * 17 15 13 28 28 H 1.07996 * 125.80427 * 179.77219 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8881 2.3965 1.2124 6 1 1.8883 2.3964 -1.2126 7 6 2.0079 -1.2037 0.0005 8 1 3.0341 -1.2345 0.3359 9 7 1.3899 -2.3536 -0.4254 10 6 1.8805 -3.6215 -0.3051 11 6 0.9662 -4.4660 -0.8454 12 7 1.0770 -5.8653 -0.9254 13 6 0.0929 -6.5877 -1.4965 14 8 -0.8882 -6.0305 -1.9419 15 6 0.2114 -8.0876 -1.5816 16 1 1.2207 -8.4717 -1.7297 17 6 -0.9386 -8.8508 -2.2418 18 6 -0.7438 -8.9214 -0.7254 19 1 -0.3630 -9.8545 -0.3100 20 9 -1.6607 -8.2332 0.0762 21 6 -0.1089 -3.6919 -1.3178 22 7 0.1467 -2.4329 -1.0658 23 1 -0.4849 -0.8357 0.0858 24 1 2.8233 -3.9017 0.1410 25 1 1.8617 -6.3108 -0.5694 26 1 -1.7811 -8.2680 -2.6141 27 1 -0.6859 -9.7371 -2.8238 28 1 -0.9949 -4.0716 -1.8048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348725336.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:39 Heat of formation + Delta-G solvation = 21.184188 kcal Electronic energy + Delta-G solvation = -16330.576570 eV Core-core repulsion = 13298.866095 eV Total energy + Delta-G solvation = -3031.710475 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.65691 -40.10365 -38.92312 -35.80197 -34.33062 -33.21920 -30.23655 -28.04130 -25.11774 -23.90325 -22.53760 -21.00710 -20.07202 -19.50049 -18.18554 -17.31736 -16.46907 -15.70664 -15.26106 -14.84040 -14.64269 -14.12262 -13.87650 -13.60794 -13.45697 -13.12550 -12.80037 -12.14478 -11.86895 -11.51409 -11.11661 -10.61825 -10.39870 -10.36703 -10.24214 -10.10282 -9.42003 -9.28840 -9.11150 -8.24342 -7.01178 -6.85103 -4.28869 2.52349 3.09005 3.17372 3.34508 3.38762 3.47329 3.63765 3.96542 3.97607 4.26928 4.42981 4.50940 4.72549 4.85300 4.98086 5.14824 5.48026 5.64546 5.95562 6.13745 6.29030 6.77509 6.89332 7.02983 7.52206 7.82857 8.10230 8.30235 8.53226 8.74773 9.24972 9.41247 10.33883 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.068283 B = 0.004986 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.957003 B = 5614.673223 C = 5726.291858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.023 3.977 3 Si 1.091 2.909 4 H -0.279 1.279 5 H -0.279 1.279 6 H -0.275 1.275 7 C -0.399 4.399 8 H 0.112 0.888 9 N -0.139 5.139 10 C -0.082 4.082 11 C -0.058 4.058 12 N -0.618 5.618 13 C 0.527 3.473 14 O -0.530 6.530 15 C -0.200 4.200 16 H 0.135 0.865 17 C -0.160 4.160 18 C 0.041 3.959 19 H 0.140 0.860 20 F -0.174 7.174 21 C -0.013 4.013 22 N -0.337 5.337 23 H 0.311 0.689 24 H 0.148 0.852 25 H 0.399 0.601 26 H 0.119 0.881 27 H 0.117 0.883 28 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.199 -14.847 -0.795 15.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C -0.198 4.198 3 Si 0.914 3.086 4 H -0.204 1.204 5 H -0.204 1.204 6 H -0.201 1.201 7 C -0.531 4.531 8 H 0.129 0.871 9 N 0.096 4.904 10 C -0.234 4.234 11 C -0.163 4.163 12 N -0.260 5.260 13 C 0.312 3.688 14 O -0.407 6.407 15 C -0.222 4.222 16 H 0.153 0.847 17 C -0.197 4.197 18 C 0.005 3.995 19 H 0.157 0.843 20 F -0.155 7.155 21 C -0.185 4.185 22 N -0.171 5.171 23 H 0.126 0.874 24 H 0.166 0.834 25 H 0.232 0.768 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.779 -11.603 -1.250 11.996 hybrid contribution 1.065 -2.872 0.419 3.092 sum 3.844 -14.475 -0.831 15.000 Atomic orbital electron populations 1.70282 1.07468 1.35568 1.29263 1.26786 0.96276 1.02724 0.94011 0.83226 0.74491 0.72941 0.77966 1.20388 1.20428 1.20058 1.20924 0.99192 0.85001 1.48016 0.87053 1.44646 1.11165 1.04101 1.30521 1.21247 1.01876 0.85030 1.15223 1.17184 0.99789 0.81725 1.17619 1.42363 1.21127 1.05008 1.57482 1.19160 0.83221 0.86987 0.79393 1.90594 1.30955 1.71439 1.47722 1.22973 0.98660 0.93101 1.07476 0.84743 1.23659 1.00010 1.02065 0.94003 1.22099 0.92730 0.95751 0.88961 0.84251 1.92873 1.67215 1.81108 1.74273 1.23822 0.99896 0.89618 1.05212 1.77475 0.99693 1.18648 1.21241 0.87369 0.83426 0.76811 0.86262 0.86508 0.80429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -23.44 13.25 55.50 0.74 -22.71 15 2 C 0.02 0.60 5.38 -17.50 -0.09 0.51 15 3 Si 1.09 22.37 29.97 -169.99 -5.09 17.28 15 4 H -0.28 -5.24 7.11 56.52 0.40 -4.84 15 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 15 6 H -0.28 -5.64 7.11 56.52 0.40 -5.24 15 7 C -0.40 -10.83 10.12 -14.81 -0.15 -10.98 15 8 H 0.11 2.75 7.92 -52.48 -0.42 2.33 15 9 N -0.14 -3.86 3.64 -11.41 -0.04 -3.91 15 10 C -0.08 -1.98 11.49 -16.40 -0.19 -2.17 15 11 C -0.06 -1.36 6.90 -83.84 -0.58 -1.94 15 12 N -0.62 -11.20 5.47 -9.99 -0.05 -11.26 15 13 C 0.53 9.41 7.22 -10.98 -0.08 9.33 15 14 O -0.53 -11.70 13.41 5.54 0.07 -11.63 15 15 C -0.20 -2.33 6.19 -91.77 -0.57 -2.90 15 16 H 0.13 1.06 8.14 -51.93 -0.42 0.63 15 17 C -0.16 -1.63 10.03 -26.71 -0.27 -1.90 15 18 C 0.04 0.44 7.83 -26.71 -0.21 0.23 15 19 H 0.14 0.89 8.14 -51.93 -0.42 0.47 15 20 F -0.17 -2.72 17.13 2.25 0.04 -2.68 15 21 C -0.01 -0.34 10.85 -17.03 -0.18 -0.53 15 22 N -0.34 -9.83 9.70 30.80 0.30 -9.53 15 23 H 0.31 9.58 6.35 -40.82 -0.26 9.32 15 24 H 0.15 2.97 8.06 -52.49 -0.42 2.55 15 25 H 0.40 5.48 8.83 -40.82 -0.36 5.12 15 26 H 0.12 1.52 7.67 -51.93 -0.40 1.12 15 27 H 0.12 0.76 8.14 -51.93 -0.42 0.34 15 28 H 0.18 4.71 5.92 -52.49 -0.31 4.40 15 LS Contribution 259.06 15.07 3.90 3.90 Total: -1.00 -35.08 259.06 -4.69 -39.77 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -2.23 Total: 11.10 kcal Atomic # 6 Polarization: -8.02 SS G_CDS: -2.32 Total: -10.34 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: 0.94 Total: -47.40 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.07 Total: -11.63 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.09 Total: 17.28 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -35.08 -4.69 -39.77 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348725336.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.955 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds