Wall clock time and date at job start Sun Mar 29 2020 22:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31297 * 1 3 3 Si 1.86800 * 119.99772 * 2 1 4 4 H 1.48502 * 109.46868 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47156 * 59.99634 * 3 2 1 6 6 H 1.48496 * 109.47163 * 299.99109 * 3 2 1 7 7 C 1.38989 * 119.99967 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99532 * 201.00903 * 7 2 1 9 9 N 1.37320 * 120.00351 * 21.01434 * 7 2 1 10 10 C 1.36479 * 126.07169 * 189.74534 * 9 7 2 11 11 C 1.35688 * 107.51031 * 179.83439 * 10 9 7 12 12 N 1.40593 * 126.08330 * 180.11625 * 11 10 9 13 13 C 1.34780 * 119.99816 * 180.32999 * 12 11 10 14 14 O 1.21302 * 119.99883 * 0.02562 * 13 12 11 15 15 C 1.50704 * 119.99884 * 180.02562 * 13 12 11 16 16 H 1.08995 * 115.54737 * 325.67145 * 15 13 12 17 17 C 1.52999 * 117.49723 * 180.02562 * 15 13 12 18 18 C 1.52996 * 117.49590 * 111.37767 * 15 13 12 19 19 H 1.09006 * 117.49666 * 214.97264 * 18 15 13 20 20 F 1.39892 * 117.50296 * 0.02562 * 18 15 13 21 21 C 1.40650 * 107.83233 * 0.42692 * 11 10 9 22 22 N 1.30910 * 108.38496 * 359.72856 * 21 11 10 23 23 H 0.96998 * 119.99559 * 185.86524 * 1 2 3 24 24 H 1.08000 * 126.24737 * 359.97438 * 10 9 7 25 25 H 0.97000 * 120.00442 * 0.33889 * 12 11 10 26 26 H 1.08998 * 117.49849 * 359.97438 * 17 15 13 27 27 H 1.09002 * 117.49562 * 144.99831 * 17 15 13 28 28 H 1.07996 * 125.80427 * 179.77219 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.7069 1.3464 0.0006 5 1 1.8881 2.3965 1.2124 6 1 1.8883 2.3964 -1.2126 7 6 2.0079 -1.2037 0.0005 8 1 3.0341 -1.2345 0.3359 9 7 1.3899 -2.3536 -0.4254 10 6 1.8805 -3.6215 -0.3051 11 6 0.9662 -4.4660 -0.8454 12 7 1.0770 -5.8653 -0.9254 13 6 0.0929 -6.5877 -1.4965 14 8 -0.8882 -6.0305 -1.9419 15 6 0.2114 -8.0876 -1.5816 16 1 1.2207 -8.4717 -1.7297 17 6 -0.9386 -8.8508 -2.2418 18 6 -0.7438 -8.9214 -0.7254 19 1 -0.3630 -9.8545 -0.3100 20 9 -1.6607 -8.2332 0.0762 21 6 -0.1089 -3.6919 -1.3178 22 7 0.1467 -2.4329 -1.0658 23 1 -0.4849 -0.8357 0.0858 24 1 2.8233 -3.9017 0.1410 25 1 1.8617 -6.3108 -0.5694 26 1 -1.7811 -8.2680 -2.6141 27 1 -0.6859 -9.7371 -2.8238 28 1 -0.9949 -4.0716 -1.8048 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348725336.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:39 Heat of formation + Delta-G solvation = -4.470019 kcal Electronic energy + Delta-G solvation = -16331.689020 eV Core-core repulsion = 13298.866095 eV Total energy + Delta-G solvation = -3032.822925 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -48.69894 -41.94992 -40.50203 -36.87554 -36.06215 -35.07170 -32.29589 -29.90042 -26.93866 -25.37274 -23.33955 -22.92208 -21.66368 -21.23909 -19.92942 -18.57460 -17.84151 -17.23476 -16.74690 -16.32587 -15.99829 -15.65560 -15.53660 -15.40695 -14.97768 -14.66823 -13.89155 -13.83808 -13.44695 -13.03061 -12.84943 -12.18916 -11.92990 -11.82203 -11.46125 -11.41570 -11.17151 -11.05212 -10.81943 -10.33619 -9.09044 -8.72806 -6.38820 1.06152 1.37945 1.52033 1.77148 1.81992 1.96066 2.20586 2.32006 2.69068 2.70188 2.99328 3.18114 3.55515 3.71822 4.06907 4.19464 4.27070 4.37486 4.76755 4.82740 4.91035 4.94186 5.13672 5.29917 5.51752 5.78957 6.29927 6.51788 6.63775 7.19843 7.31871 7.41514 8.21541 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.068283 B = 0.004986 C = 0.004889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.957003 B = 5614.673223 C = 5726.291858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C -0.022 4.022 3 Si 1.146 2.854 4 H -0.245 1.245 5 H -0.268 1.268 6 H -0.279 1.279 7 C -0.426 4.426 8 H 0.135 0.865 9 N -0.167 5.167 10 C -0.074 4.074 11 C -0.042 4.042 12 N -0.611 5.611 13 C 0.517 3.483 14 O -0.581 6.581 15 C -0.202 4.202 16 H 0.186 0.814 17 C -0.155 4.155 18 C 0.040 3.960 19 H 0.196 0.804 20 F -0.210 7.210 21 C -0.041 4.041 22 N -0.378 5.378 23 H 0.288 0.712 24 H 0.192 0.808 25 H 0.423 0.577 26 H 0.084 0.916 27 H 0.165 0.835 28 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 -17.240 -0.523 18.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.234 4.234 3 Si 0.961 3.039 4 H -0.169 1.169 5 H -0.193 1.193 6 H -0.205 1.205 7 C -0.557 4.557 8 H 0.153 0.847 9 N 0.066 4.934 10 C -0.225 4.225 11 C -0.148 4.148 12 N -0.256 5.256 13 C 0.305 3.695 14 O -0.461 6.461 15 C -0.224 4.224 16 H 0.203 0.797 17 C -0.192 4.192 18 C 0.004 3.996 19 H 0.213 0.787 20 F -0.191 7.191 21 C -0.214 4.214 22 N -0.212 5.212 23 H 0.101 0.899 24 H 0.209 0.791 25 H 0.261 0.739 26 H 0.102 0.898 27 H 0.183 0.817 28 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 5.586 -14.059 -0.960 15.159 hybrid contribution 0.167 -2.363 0.287 2.386 sum 5.754 -16.422 -0.673 17.414 Atomic orbital electron populations 1.70412 1.08963 1.34062 1.33456 1.28637 0.96094 1.06737 0.91906 0.82625 0.74898 0.68341 0.78018 1.16852 1.19318 1.20464 1.21499 1.00213 0.85338 1.48611 0.84722 1.44911 1.11176 1.05574 1.31781 1.22039 1.03011 0.83835 1.13643 1.17322 0.97997 0.84413 1.15079 1.42379 1.22610 1.02709 1.57872 1.20422 0.81847 0.89810 0.77395 1.90581 1.32877 1.73209 1.49387 1.23063 1.01842 0.88147 1.09303 0.79694 1.23813 0.98099 1.02813 0.94502 1.22870 0.91227 0.96485 0.88981 0.78725 1.92805 1.68722 1.82169 1.75376 1.23910 1.01008 0.89994 1.06504 1.77398 1.01255 1.20060 1.22517 0.89864 0.79102 0.73888 0.89767 0.81710 0.81345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -51.45 13.25 21.66 0.29 -51.16 15 2 C -0.02 -1.18 5.38 84.95 0.46 -0.73 15 3 Si 1.15 44.60 29.97 68.60 2.06 46.65 15 4 H -0.25 -8.14 7.11 99.48 0.71 -7.43 15 5 H -0.27 -9.89 7.11 99.48 0.71 -9.18 15 6 H -0.28 -10.94 7.11 99.48 0.71 -10.23 15 7 C -0.43 -23.17 10.12 84.01 0.85 -22.32 15 8 H 0.14 6.44 7.92 -2.91 -0.02 6.42 15 9 N -0.17 -9.43 3.64 -190.01 -0.69 -10.12 15 10 C -0.07 -3.49 11.49 83.38 0.96 -2.53 15 11 C -0.04 -1.97 6.90 37.73 0.26 -1.71 15 12 N -0.61 -21.02 5.47 -303.91 -1.66 -22.68 15 13 C 0.52 17.86 7.22 87.66 0.63 18.49 15 14 O -0.58 -26.33 13.41 -3.10 -0.04 -26.37 15 15 C -0.20 -3.96 6.19 -11.54 -0.07 -4.03 15 16 H 0.19 1.74 8.14 -2.39 -0.02 1.72 15 17 C -0.15 -2.68 10.03 30.61 0.31 -2.37 15 18 C 0.04 0.71 7.83 30.61 0.24 0.95 15 19 H 0.20 1.28 8.14 -2.38 -0.02 1.26 15 20 F -0.21 -6.33 17.13 44.97 0.77 -5.56 15 21 C -0.04 -2.30 10.85 85.42 0.93 -1.38 15 22 N -0.38 -23.03 9.70 -56.47 -0.55 -23.58 15 23 H 0.29 18.83 6.35 -92.71 -0.59 18.24 15 24 H 0.19 7.04 8.06 -2.91 -0.02 7.01 15 25 H 0.42 10.13 8.83 -92.71 -0.82 9.31 15 26 H 0.08 2.11 7.67 -2.39 -0.02 2.09 15 27 H 0.17 1.26 8.14 -2.39 -0.02 1.24 15 28 H 0.17 9.55 5.92 -2.91 -0.02 9.53 15 Total: -1.00 -83.78 259.06 5.31 -78.48 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.57 Total: 29.97 kcal Atomic # 6 Polarization: -20.18 SS G_CDS: 4.56 Total: -15.62 kcal Atomic # 7 Polarization: -104.93 SS G_CDS: -2.61 Total: -107.54 kcal Atomic # 8 Polarization: -26.33 SS G_CDS: -0.04 Total: -26.37 kcal Atomic # 9 Polarization: -6.33 SS G_CDS: 0.77 Total: -5.56 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.06 Total: 46.65 kcal Total: -83.78 5.31 -78.48 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348725336.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.006 kcal (2) G-P(sol) polarization free energy of solvation -83.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.470 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds