Wall clock time and date at job start Sun Mar 29 2020 22:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46738 * 299.99648 * 3 2 1 6 6 H 1.48494 * 109.47440 * 59.99442 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 H 1.09003 * 115.55260 * 325.94874 * 15 13 12 17 17 C 1.52996 * 117.49907 * 111.65661 * 15 13 12 18 18 C 1.53001 * 60.00183 * 107.49217 * 17 15 13 19 19 H 1.08997 * 117.49260 * 252.51121 * 18 17 15 20 20 F 1.39894 * 117.50460 * 107.49085 * 18 17 15 21 21 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 22 22 N 1.30903 * 108.38945 * 359.60960 * 21 11 10 23 23 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 24 24 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 25 25 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 26 26 H 1.09002 * 117.49756 * 214.97410 * 17 15 13 27 27 H 1.08996 * 117.50359 * 359.97438 * 17 15 13 28 28 H 1.07999 * 125.80209 * 179.74829 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 1 0.8843 -8.6084 -0.5602 17 6 -0.3993 -8.9735 1.2533 18 6 -1.2548 -9.0486 -0.0130 19 1 -2.2021 -8.5095 -0.0130 20 9 -1.2440 -10.2500 -0.7296 21 6 -0.3513 -3.8198 -0.0064 22 7 -0.0716 -2.5410 -0.0010 23 1 -0.4851 0.8401 -0.0004 24 1 2.9300 -3.8708 0.0032 25 1 1.8707 -6.3427 0.0017 26 1 0.1719 -9.8603 1.5280 27 1 -0.7835 -8.3851 2.0865 28 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348725337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:41 Heat of formation + Delta-G solvation = 25.993962 kcal Electronic energy + Delta-G solvation = -16083.455226 eV Core-core repulsion = 13051.953319 eV Total energy + Delta-G solvation = -3031.501907 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -47.74496 -40.02187 -38.86379 -35.69838 -34.21836 -33.16067 -30.27047 -27.99350 -25.34044 -23.83285 -22.50407 -21.00735 -20.01047 -19.45779 -17.88409 -17.13915 -16.17340 -15.51623 -15.28707 -15.09048 -14.65894 -14.56430 -13.96727 -13.46100 -13.24076 -12.94578 -12.50572 -12.35313 -11.70614 -11.45163 -11.29779 -10.95936 -10.63617 -10.52628 -10.28385 -10.17961 -9.28799 -9.19923 -8.83544 -8.08648 -6.73637 -6.57786 -4.25096 2.56940 2.95974 3.03724 3.09978 3.32914 3.48882 3.70221 3.82445 4.12608 4.37182 4.52235 4.61347 4.85970 4.94409 5.00319 5.20816 5.45357 5.69960 5.96621 6.21950 6.42879 6.87061 6.92951 7.07880 7.21180 7.83640 8.13294 8.25034 8.59445 8.80185 9.35385 9.64313 10.38273 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.086791 B = 0.004511 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.537151 B = 6204.929341 C = 6400.087312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.045 3.955 3 Si 0.935 3.065 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.323 4.323 8 H 0.117 0.883 9 N -0.142 5.142 10 C -0.083 4.083 11 C -0.063 4.063 12 N -0.616 5.616 13 C 0.529 3.471 14 O -0.536 6.536 15 C -0.197 4.197 16 H 0.131 0.869 17 C -0.163 4.163 18 C 0.048 3.952 19 H 0.148 0.852 20 F -0.183 7.183 21 C -0.033 4.033 22 N -0.260 5.260 23 H 0.275 0.725 24 H 0.146 0.854 25 H 0.399 0.601 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.330 -12.010 1.376 12.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.172 4.172 3 Si 0.759 3.241 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.090 4.910 10 C -0.234 4.234 11 C -0.168 4.168 12 N -0.257 5.257 13 C 0.314 3.686 14 O -0.414 6.414 15 C -0.219 4.219 16 H 0.149 0.851 17 C -0.201 4.201 18 C 0.011 3.989 19 H 0.165 0.835 20 F -0.164 7.164 21 C -0.208 4.208 22 N -0.091 5.091 23 H 0.085 0.915 24 H 0.164 0.836 25 H 0.232 0.768 26 H 0.131 0.869 27 H 0.135 0.865 28 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 1.869 -10.321 1.352 10.575 hybrid contribution 1.470 -0.501 -0.125 1.558 sum 3.340 -10.821 1.227 11.391 Atomic orbital electron populations 1.70227 1.06137 1.27918 1.35308 1.25654 0.95722 1.00311 0.95481 0.85755 0.79620 0.80222 0.78492 1.18681 1.19895 1.19904 1.19927 0.91692 0.80519 1.53365 0.86537 1.44571 1.04055 1.03327 1.39032 1.21262 0.96849 0.85365 1.19905 1.17277 0.94377 0.81133 1.24030 1.42384 1.08126 1.04514 1.70672 1.19134 0.84580 0.86449 0.78439 1.90606 1.25875 1.74455 1.50464 1.22891 1.01288 0.92982 1.04694 0.85146 1.23671 1.02099 1.02244 0.92081 1.22105 0.97268 0.83595 0.95883 0.83451 1.92800 1.97655 1.46669 1.79238 1.24112 0.98025 0.90757 1.07923 1.78259 0.90129 1.15049 1.25698 0.91481 0.83644 0.76818 0.86896 0.86484 0.80718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.47 11.81 55.49 0.66 -20.82 15 2 C 0.05 1.17 5.50 -17.50 -0.10 1.08 15 3 Si 0.94 18.84 29.55 -169.99 -5.02 13.81 15 4 H -0.26 -5.02 7.11 56.52 0.40 -4.62 15 5 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 7 C -0.32 -8.51 10.25 -14.82 -0.15 -8.66 15 8 H 0.12 2.74 7.83 -52.49 -0.41 2.33 15 9 N -0.14 -3.90 3.74 -11.41 -0.04 -3.94 15 10 C -0.08 -1.94 11.49 -16.39 -0.19 -2.13 15 11 C -0.06 -1.44 6.90 -83.84 -0.58 -2.02 15 12 N -0.62 -10.75 5.47 -10.00 -0.05 -10.81 15 13 C 0.53 8.99 7.58 -10.98 -0.08 8.90 15 14 O -0.54 -11.17 13.41 5.54 0.07 -11.09 15 15 C -0.20 -2.37 6.17 -91.77 -0.57 -2.94 15 16 H 0.13 1.28 8.14 -51.93 -0.42 0.86 15 17 C -0.16 -1.62 10.22 -26.73 -0.27 -1.90 15 18 C 0.05 0.56 7.41 -26.73 -0.20 0.37 15 19 H 0.15 1.79 7.67 -51.93 -0.40 1.39 15 20 F -0.18 -2.31 17.60 2.25 0.04 -2.27 15 21 C -0.03 -0.86 10.85 -17.04 -0.18 -1.04 15 22 N -0.26 -7.58 10.40 30.80 0.32 -7.26 15 23 H 0.27 6.98 8.31 -40.82 -0.34 6.64 15 24 H 0.15 2.82 8.06 -52.49 -0.42 2.40 15 25 H 0.40 5.30 8.83 -40.82 -0.36 4.94 15 26 H 0.11 0.88 8.14 -51.93 -0.42 0.46 15 27 H 0.12 1.18 8.14 -51.93 -0.42 0.76 15 28 H 0.18 4.54 5.92 -52.49 -0.31 4.23 15 LS Contribution 260.71 15.07 3.93 3.93 Total: -1.00 -32.81 260.71 -4.73 -37.54 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -2.31 Total: 9.24 kcal Atomic # 6 Polarization: -6.02 SS G_CDS: -2.32 Total: -8.34 kcal Atomic # 7 Polarization: -43.70 SS G_CDS: 0.88 Total: -42.82 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.07 Total: -11.09 kcal Atomic # 9 Polarization: -2.31 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.02 Total: 13.81 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.81 -4.73 -37.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348725337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.535 kcal (2) G-P(sol) polarization free energy of solvation -32.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.541 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds