Wall clock time and date at job start Sun Mar 29 2020 22:21:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31296 * 1 3 3 Si 1.86798 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47382 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46738 * 299.99648 * 3 2 1 6 6 H 1.48494 * 109.47440 * 59.99442 * 3 2 1 7 7 C 1.38983 * 119.99923 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99917 * 180.02562 * 7 2 1 9 9 N 1.37320 * 120.00055 * 0.02562 * 7 2 1 10 10 C 1.36497 * 126.07148 * 180.02562 * 9 7 2 11 11 C 1.35679 * 107.50848 * 180.02562 * 10 9 7 12 12 N 1.40595 * 126.07814 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99527 * 179.97438 * 12 11 10 14 14 O 1.21303 * 120.00450 * 0.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 179.72943 * 13 12 11 16 16 H 1.09003 * 115.55260 * 325.94874 * 15 13 12 17 17 C 1.52996 * 117.49907 * 111.65661 * 15 13 12 18 18 C 1.53001 * 60.00183 * 107.49217 * 17 15 13 19 19 H 1.08997 * 117.49260 * 252.51121 * 18 17 15 20 20 F 1.39894 * 117.50460 * 107.49085 * 18 17 15 21 21 C 1.40649 * 107.83573 * 0.22685 * 11 10 9 22 22 N 1.30903 * 108.38945 * 359.60960 * 21 11 10 23 23 H 0.97004 * 120.00252 * 0.02562 * 1 2 3 24 24 H 1.07996 * 126.24207 * 0.04819 * 10 9 7 25 25 H 0.97001 * 119.99988 * 0.02562 * 12 11 10 26 26 H 1.09002 * 117.49756 * 214.97410 * 17 15 13 27 27 H 1.08996 * 117.50359 * 359.97438 * 17 15 13 28 28 H 1.07999 * 125.80209 * 179.74829 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2470 1.6177 0.0000 4 1 3.7070 1.3464 0.0006 5 1 1.8882 2.3963 -1.2126 6 1 1.8882 2.3965 1.2124 7 6 2.0079 -1.2036 0.0005 8 1 3.0878 -1.2036 0.0010 9 7 1.3213 -2.3929 0.0005 10 6 1.8749 -3.6405 0.0015 11 6 0.8577 -4.5384 0.0006 12 7 0.9890 -5.9382 0.0006 13 6 -0.1102 -6.7181 0.0001 14 8 -1.2128 -6.2123 -0.0009 15 6 0.0305 -8.2185 -0.0061 16 1 0.8843 -8.6084 -0.5602 17 6 -0.3993 -8.9735 1.2533 18 6 -1.2548 -9.0486 -0.0130 19 1 -2.2021 -8.5095 -0.0130 20 9 -1.2440 -10.2500 -0.7296 21 6 -0.3513 -3.8198 -0.0064 22 7 -0.0716 -2.5410 -0.0010 23 1 -0.4851 0.8401 -0.0004 24 1 2.9300 -3.8708 0.0032 25 1 1.8707 -6.3427 0.0017 26 1 0.1719 -9.8603 1.5280 27 1 -0.7835 -8.3851 2.0865 28 1 -1.3419 -4.2499 -0.0126 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348725337.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:41 Heat of formation + Delta-G solvation = 3.139048 kcal Electronic energy + Delta-G solvation = -16084.446290 eV Core-core repulsion = 13051.953319 eV Total energy + Delta-G solvation = -3032.492971 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.69192 -41.74555 -40.44590 -36.79811 -35.87103 -34.96209 -32.25055 -29.80705 -27.11477 -25.23125 -23.39217 -22.84940 -21.50650 -21.15669 -19.45693 -18.55056 -17.49546 -17.28871 -16.62658 -16.42479 -16.05819 -15.77325 -15.49205 -15.08635 -14.84945 -14.68936 -13.52520 -13.47996 -13.37463 -13.20609 -12.93435 -12.84018 -12.02789 -11.90037 -11.56245 -11.18211 -11.03784 -10.86291 -10.71426 -10.11337 -8.54669 -8.47487 -6.24899 1.14353 1.40216 1.42508 1.59359 1.81996 1.98066 2.21273 2.39320 2.68465 2.86603 3.08660 3.13313 3.58437 3.71786 4.02627 4.14891 4.43158 4.59036 4.69397 4.85445 5.00117 5.08487 5.10405 5.29011 5.45402 5.95612 6.30181 6.72348 6.73114 7.35408 7.46145 7.67281 8.52181 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.086791 B = 0.004511 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 322.537151 B = 6204.929341 C = 6400.087312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C -0.008 4.008 3 Si 1.020 2.980 4 H -0.240 1.240 5 H -0.273 1.273 6 H -0.273 1.273 7 C -0.353 4.353 8 H 0.142 0.858 9 N -0.169 5.169 10 C -0.079 4.079 11 C -0.047 4.047 12 N -0.608 5.608 13 C 0.527 3.473 14 O -0.579 6.579 15 C -0.195 4.195 16 H 0.162 0.838 17 C -0.134 4.134 18 C 0.036 3.964 19 H 0.136 0.864 20 F -0.186 7.186 21 C -0.060 4.060 22 N -0.311 5.311 23 H 0.276 0.724 24 H 0.190 0.810 25 H 0.422 0.578 26 H 0.146 0.854 27 H 0.115 0.885 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.885 -13.373 1.710 14.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.453 5.453 2 C -0.220 4.220 3 Si 0.839 3.161 4 H -0.162 1.162 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.159 0.841 9 N 0.062 4.938 10 C -0.229 4.229 11 C -0.153 4.153 12 N -0.252 5.252 13 C 0.315 3.685 14 O -0.459 6.459 15 C -0.216 4.216 16 H 0.180 0.820 17 C -0.172 4.172 18 C 0.000 4.000 19 H 0.154 0.846 20 F -0.167 7.167 21 C -0.236 4.236 22 N -0.143 5.143 23 H 0.086 0.914 24 H 0.207 0.793 25 H 0.260 0.740 26 H 0.164 0.836 27 H 0.134 0.866 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 4.464 -11.750 1.688 12.682 hybrid contribution 0.628 -0.262 -0.231 0.719 sum 5.092 -12.011 1.457 13.127 Atomic orbital electron populations 1.70406 1.08450 1.29042 1.37432 1.26899 0.96491 1.04401 0.94165 0.84524 0.79084 0.74355 0.78160 1.16242 1.19852 1.19802 1.20668 0.92985 0.80843 1.53906 0.84058 1.44868 1.03622 1.04877 1.40416 1.22022 0.98880 0.84151 1.17868 1.17352 0.92819 0.83736 1.21433 1.42342 1.09852 1.02248 1.70799 1.20043 0.83571 0.88548 0.76380 1.90598 1.27639 1.75824 1.51823 1.22830 1.02605 0.88988 1.07218 0.81999 1.23814 1.00317 1.02322 0.90734 1.22084 0.96924 0.83474 0.97518 0.84630 1.92796 1.97637 1.46688 1.79554 1.24184 0.99094 0.90958 1.09329 1.78152 0.92086 1.16601 1.27458 0.91409 0.79342 0.74026 0.83594 0.86639 0.81518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -47.76 11.81 21.66 0.26 -47.51 15 2 C -0.01 -0.42 5.50 84.95 0.47 0.04 15 3 Si 1.02 38.43 29.55 68.60 2.03 40.46 15 4 H -0.24 -8.03 7.11 99.48 0.71 -7.32 15 5 H -0.27 -10.16 7.11 99.48 0.71 -9.46 15 6 H -0.27 -10.12 7.11 99.48 0.71 -9.42 15 7 C -0.35 -18.60 10.25 84.01 0.86 -17.73 15 8 H 0.14 6.42 7.83 -2.91 -0.02 6.40 15 9 N -0.17 -9.35 3.74 -190.02 -0.71 -10.06 15 10 C -0.08 -3.60 11.49 83.37 0.96 -2.64 15 11 C -0.05 -2.14 6.90 37.73 0.26 -1.88 15 12 N -0.61 -20.04 5.47 -303.92 -1.66 -21.70 15 13 C 0.53 17.19 7.58 87.66 0.66 17.86 15 14 O -0.58 -24.40 13.41 -3.10 -0.04 -24.44 15 15 C -0.19 -4.12 6.17 -11.54 -0.07 -4.19 15 16 H 0.16 2.44 8.14 -2.39 -0.02 2.42 15 17 C -0.13 -2.20 10.22 30.59 0.31 -1.89 15 18 C 0.04 0.79 7.41 30.60 0.23 1.01 15 19 H 0.14 3.26 7.67 -2.39 -0.02 3.24 15 20 F -0.19 -4.27 17.60 44.97 0.79 -3.47 15 21 C -0.06 -3.29 10.85 85.42 0.93 -2.36 15 22 N -0.31 -18.81 10.40 -56.47 -0.59 -19.39 15 23 H 0.28 14.65 8.31 -92.71 -0.77 13.88 15 24 H 0.19 6.67 8.06 -2.91 -0.02 6.65 15 25 H 0.42 9.77 8.83 -92.71 -0.82 8.95 15 26 H 0.15 1.52 8.14 -2.39 -0.02 1.50 15 27 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 28 H 0.17 9.16 5.92 -2.91 -0.02 9.14 15 Total: -1.00 -75.01 260.71 5.07 -69.93 By element: Atomic # 1 Polarization: 27.57 SS G_CDS: 0.39 Total: 27.96 kcal Atomic # 6 Polarization: -16.38 SS G_CDS: 4.61 Total: -11.78 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -2.70 Total: -98.66 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -0.04 Total: -24.44 kcal Atomic # 9 Polarization: -4.27 SS G_CDS: 0.79 Total: -3.47 kcal Atomic # 14 Polarization: 38.43 SS G_CDS: 2.03 Total: 40.46 kcal Total: -75.01 5.07 -69.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348725337.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.073 kcal (2) G-P(sol) polarization free energy of solvation -75.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.934 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds