Wall clock time and date at job start Sun Mar 29 2020 22:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50694 * 120.00046 * 2 1 4 4 N 1.46503 * 109.47079 * 125.00109 * 3 2 1 5 5 C 1.36757 * 127.14036 * 264.68206 * 4 3 2 6 6 N 1.30299 * 107.31645 * 179.89751 * 5 4 3 7 7 N 1.28518 * 110.07883 * 0.37731 * 6 5 4 8 8 C 1.31291 * 109.85702 * 359.76256 * 7 6 5 9 9 S 1.76199 * 126.48303 * 180.02562 * 8 7 6 10 10 C 1.80998 * 100.00379 * 359.95414 * 9 8 7 11 11 C 1.52997 * 109.47317 * 179.97438 * 10 9 8 12 12 C 1.50699 * 109.47358 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99623 * 0.02562 * 12 11 10 14 14 C 1.37877 * 120.00092 * 179.97438 * 12 11 10 15 15 N 1.31509 * 119.99720 * 180.02562 * 14 12 11 16 16 Si 1.86800 * 119.99904 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.46821 * 90.00354 * 16 14 12 18 18 H 1.48504 * 109.46821 * 209.99724 * 16 14 12 19 19 H 1.48492 * 109.47419 * 330.00281 * 16 14 12 20 20 H 1.08005 * 119.99846 * 0.02562 * 1 2 3 21 21 H 1.07995 * 120.00080 * 179.72892 * 1 2 3 22 22 H 1.08000 * 119.99390 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47261 * 245.00047 * 3 2 1 24 24 H 1.08997 * 109.47273 * 4.99972 * 3 2 1 25 25 H 1.07999 * 126.34022 * 359.97438 * 5 4 3 26 26 H 1.08999 * 109.47141 * 300.00728 * 10 9 8 27 27 H 1.09008 * 109.46700 * 60.00363 * 10 9 8 28 28 H 1.09004 * 109.47245 * 300.00720 * 11 10 9 29 29 H 1.09001 * 109.46956 * 59.99864 * 11 10 9 30 30 H 0.96999 * 119.99998 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1314 5 6 2.7790 1.8836 2.3642 6 7 3.8561 1.6865 3.0703 7 7 4.7335 1.0596 2.3712 8 6 4.2574 0.8163 1.1721 9 16 5.0911 -0.0184 -0.1367 10 6 6.6681 -0.3796 0.6750 11 6 7.5836 -1.1251 -0.2982 12 6 8.8963 -1.4264 0.3778 13 1 9.0609 -1.1175 1.3995 14 6 9.8867 -2.0974 -0.3078 15 7 11.0321 -2.3607 0.2824 16 14 9.6015 -2.6322 -2.0747 17 1 10.0401 -1.5528 -2.9955 18 1 10.3816 -3.8654 -2.3505 19 1 8.1565 -2.9036 -2.2827 20 1 -0.5400 0.9354 -0.0004 21 1 -0.5400 -0.9352 -0.0044 22 1 1.8499 -0.9354 0.0004 23 1 2.6213 1.4026 -0.9314 24 1 1.3586 2.1316 0.0896 25 1 1.8821 2.3881 2.6920 26 1 7.1426 0.5535 0.9786 27 1 6.4907 -0.9998 1.5537 28 1 7.1087 -2.0582 -0.6014 29 1 7.7609 -0.5054 -1.1772 30 1 11.7287 -2.8331 -0.1998 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350439717.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:30:33 Heat of formation + Delta-G solvation = 91.922931 kcal Electronic energy + Delta-G solvation = -14045.197369 eV Core-core repulsion = 11582.767533 eV Total energy + Delta-G solvation = -2462.429837 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.76003 -36.42637 -33.78754 -32.94455 -31.32838 -30.55031 -27.13855 -25.63445 -22.80678 -22.27556 -20.85862 -20.33542 -17.94920 -17.02245 -16.33747 -16.16986 -15.16856 -15.06171 -14.44322 -14.07271 -13.90028 -13.39617 -12.84255 -12.75060 -11.93628 -11.92347 -11.50245 -11.27210 -10.78210 -10.48247 -10.28670 -10.20493 -10.16156 -10.01660 -9.82558 -9.70537 -9.27857 -8.61125 -7.43452 -6.10406 -4.11018 1.29167 1.60403 1.76369 2.57568 2.79060 2.93281 3.27323 3.35025 3.37187 4.21194 4.36302 4.39013 4.54606 4.78200 5.01767 5.22198 5.23624 5.39369 5.61514 5.89343 5.96538 6.00641 6.09232 6.15126 6.50816 6.71040 7.01751 7.12879 7.62240 8.43428 8.72622 8.93509 9.48761 11.02358 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.036256 B = 0.005406 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 772.094884 B = 5178.507527 C = 5801.827996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.178 4.178 3 C 0.136 3.864 4 N -0.468 5.468 5 C 0.148 3.852 6 N -0.290 5.290 7 N -0.291 5.291 8 C 0.173 3.827 9 S -0.042 6.042 10 C -0.065 4.065 11 C 0.001 3.999 12 C -0.519 4.519 13 H 0.078 0.922 14 C 0.072 3.928 15 N -0.897 5.897 16 Si 0.877 3.123 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.265 1.265 20 H 0.100 0.900 21 H 0.106 0.894 22 H 0.122 0.878 23 H 0.106 0.894 24 H 0.102 0.898 25 H 0.217 0.783 26 H 0.091 0.909 27 H 0.091 0.909 28 H 0.027 0.973 29 H 0.022 0.978 30 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.895 6.782 -3.486 23.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.197 4.197 3 C 0.014 3.986 4 N -0.163 5.163 5 C -0.142 4.142 6 N -0.128 5.128 7 N -0.135 5.135 8 C -0.201 4.201 9 S 0.188 5.812 10 C -0.213 4.213 11 C -0.039 4.039 12 C -0.559 4.559 13 H 0.096 0.904 14 C -0.130 4.130 15 N -0.535 5.535 16 Si 0.704 3.296 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.189 1.189 20 H 0.119 0.881 21 H 0.125 0.875 22 H 0.140 0.860 23 H 0.125 0.875 24 H 0.121 0.879 25 H 0.234 0.766 26 H 0.110 0.890 27 H 0.110 0.890 28 H 0.045 0.955 29 H 0.041 0.959 30 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.137 6.498 -3.423 22.377 hybrid contribution -0.685 0.003 -0.706 0.983 sum -21.822 6.501 -4.128 23.141 Atomic orbital electron populations 1.23945 0.95376 1.02578 0.98190 1.23164 0.96344 0.98421 1.01784 1.21001 0.91736 0.97503 0.88356 1.46685 1.12382 1.43929 1.13322 1.26592 1.02016 1.03261 0.82316 1.73951 0.98998 1.14159 1.25706 1.74794 1.22866 1.15932 0.99941 1.27150 0.87234 1.04303 1.01439 1.85487 1.16626 1.66806 1.12314 1.23776 0.90102 1.05200 1.02261 1.19440 0.94732 0.95204 0.94477 1.20906 0.96042 1.37634 1.01311 0.90392 1.24954 0.94814 0.95154 0.98096 1.69892 1.05183 1.40987 1.37412 0.86814 0.78860 0.78552 0.85363 1.20048 1.21123 1.18908 0.88139 0.87525 0.86029 0.87549 0.87935 0.76623 0.89041 0.89021 0.95494 0.95926 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.99 14.32 29.01 0.42 -0.57 16 2 C -0.18 -1.46 9.85 -36.03 -0.35 -1.81 16 3 C 0.14 1.13 6.46 -5.20 -0.03 1.10 16 4 N -0.47 -5.91 2.79 -119.46 -0.33 -6.24 16 5 C 0.15 1.85 12.80 -88.95 -1.14 0.71 16 6 N -0.29 -5.02 12.17 29.90 0.36 -4.65 16 7 N -0.29 -5.65 11.60 30.68 0.36 -5.29 16 8 C 0.17 2.88 8.07 -88.34 -0.71 2.17 16 9 S -0.04 -0.70 21.93 -107.50 -2.36 -3.06 16 10 C -0.07 -1.34 5.17 37.16 0.19 -1.15 16 11 C 0.00 0.03 4.04 -27.89 -0.11 -0.08 16 12 C -0.52 -14.62 9.66 -34.44 -0.33 -14.96 16 13 H 0.08 2.37 7.99 -52.49 -0.42 1.96 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -27.35 13.96 55.43 0.77 -26.58 16 16 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 17 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.26 -6.10 6.54 56.52 0.37 -5.73 16 20 H 0.10 0.43 7.84 -52.48 -0.41 0.02 16 21 H 0.11 0.58 8.06 -52.49 -0.42 0.16 16 22 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 23 H 0.11 0.88 8.02 -51.93 -0.42 0.46 16 24 H 0.10 0.53 7.79 -51.93 -0.40 0.12 16 25 H 0.22 1.55 8.06 -52.49 -0.42 1.13 16 26 H 0.09 1.94 8.14 -51.92 -0.42 1.52 16 27 H 0.09 1.95 8.14 -51.91 -0.42 1.53 16 28 H 0.03 0.62 7.20 -51.93 -0.37 0.25 16 29 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 281.69 15.07 4.25 4.25 Total: -1.00 -33.20 281.69 -7.50 -40.70 By element: Atomic # 1 Polarization: 0.68 SS G_CDS: -3.70 Total: -3.02 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -2.18 Total: -12.61 kcal Atomic # 7 Polarization: -43.92 SS G_CDS: 1.16 Total: -42.76 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: -0.70 SS G_CDS: -2.36 Total: -3.06 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -33.20 -7.50 -40.70 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350439717.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.623 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds