Wall clock time and date at job start Sun Mar 29 2020 22:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99641 * 2 1 4 4 H 1.48504 * 109.47146 * 269.99839 * 3 2 1 5 5 H 1.48495 * 109.47444 * 30.00036 * 3 2 1 6 6 H 1.48504 * 109.47131 * 150.00279 * 3 2 1 7 7 C 1.37868 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00350 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.81404 * 102.99536 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46815 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47241 * 180.02562 * 12 11 10 14 14 C 1.35763 * 119.62574 * 90.00014 * 13 12 11 15 15 C 1.35346 * 120.69997 * 180.27933 * 14 13 12 16 16 C 1.40202 * 119.94860 * 359.43664 * 15 14 13 17 17 C 1.36395 * 119.26120 * 0.57668 * 16 15 14 18 18 C 1.34664 * 119.61981 * 270.02413 * 13 12 11 19 19 O 1.22055 * 119.98569 * 359.97438 * 18 13 12 20 20 H 0.96995 * 120.00273 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47100 * 59.99427 * 9 7 2 22 22 H 1.09001 * 109.46431 * 299.99580 * 9 7 2 23 23 H 1.09004 * 109.46772 * 60.00334 * 11 10 9 24 24 H 1.08991 * 109.47764 * 300.00116 * 11 10 9 25 25 H 1.08991 * 109.47264 * 60.00498 * 12 11 10 26 26 H 1.09001 * 109.47142 * 300.00134 * 12 11 10 27 27 H 1.08002 * 119.64669 * 359.97438 * 14 13 12 28 28 H 1.07996 * 120.02410 * 179.69320 * 15 14 13 29 29 H 1.08002 * 120.36615 * 180.31976 * 16 15 14 30 30 H 1.08002 * 120.34395 * 179.74309 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0005 11 6 1.3517 -5.3366 0.0013 12 6 2.2086 -6.6041 0.0008 13 7 1.3379 -7.7823 0.0008 14 6 0.9386 -8.3218 -1.1794 15 6 0.1297 -9.4066 -1.2047 16 6 -0.2946 -9.9916 -0.0033 17 6 0.1073 -9.4479 1.1813 18 6 0.9423 -8.3175 1.1715 19 8 1.3097 -7.8212 2.2242 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5566 0.8904 23 1 0.7223 -5.3236 -0.8885 24 1 0.7229 -5.3232 0.8914 25 1 2.8383 -6.6174 0.8903 26 1 2.8372 -6.6173 -0.8897 27 1 1.2659 -7.8775 -2.1078 28 1 -0.1853 -9.8239 -2.1497 29 1 -0.9358 -10.8605 -0.0157 30 1 -0.2125 -9.8819 2.1172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459110234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:42 Heat of formation + Delta-G solvation = -12.089110 kcal Electronic energy + Delta-G solvation = -13983.485789 eV Core-core repulsion = 11484.252901 eV Total energy + Delta-G solvation = -2499.232888 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.34729 -36.92066 -35.23566 -33.17864 -30.83170 -29.82574 -28.57749 -24.91219 -23.73988 -23.05147 -21.89807 -17.65516 -17.36120 -16.63951 -16.40499 -15.84217 -15.10730 -14.87578 -14.49589 -14.28577 -14.12674 -12.92052 -12.66982 -12.44143 -12.34184 -12.25109 -12.06920 -11.83828 -11.25174 -10.88095 -10.76307 -10.30235 -10.10433 -9.86551 -9.58244 -8.97163 -8.64112 -8.06771 -6.78223 -6.21985 -4.26788 0.71877 1.78193 2.17868 2.94198 3.25088 3.30876 3.36397 3.58205 3.76236 4.33570 4.46404 4.54773 4.76665 4.98697 5.03290 5.10341 5.15280 5.20794 5.42500 5.77146 5.84915 5.91614 6.05296 6.12840 6.41442 7.02731 7.03795 7.07538 7.72160 7.96767 8.01326 8.74952 9.36621 10.89380 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.054120 B = 0.004280 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.248050 B = 6540.401762 C = 6582.798682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.066 3.934 3 Si 0.908 3.092 4 H -0.277 1.277 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.514 4.514 8 H 0.068 0.932 9 C 0.094 3.906 10 S -0.291 6.291 11 C -0.108 4.108 12 C 0.110 3.890 13 N -0.492 5.492 14 C 0.141 3.859 15 C -0.242 4.242 16 C -0.018 4.018 17 C -0.247 4.247 18 C 0.509 3.491 19 O -0.546 6.546 20 H 0.266 0.734 21 H 0.036 0.964 22 H 0.037 0.963 23 H 0.076 0.924 24 H 0.081 0.919 25 H 0.109 0.891 26 H 0.099 0.901 27 H 0.162 0.838 28 H 0.143 0.857 29 H 0.132 0.868 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.412 -18.475 -4.684 19.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.735 3.265 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.553 4.553 8 H 0.086 0.914 9 C -0.053 4.053 10 S -0.066 6.066 11 C -0.257 4.257 12 C -0.012 4.012 13 N -0.203 5.203 14 C 0.012 3.988 15 C -0.265 4.265 16 C -0.040 4.040 17 C -0.269 4.269 18 C 0.311 3.689 19 O -0.428 6.428 20 H 0.076 0.924 21 H 0.055 0.945 22 H 0.055 0.945 23 H 0.094 0.906 24 H 0.099 0.901 25 H 0.127 0.873 26 H 0.117 0.883 27 H 0.180 0.820 28 H 0.161 0.839 29 H 0.150 0.850 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.800 -17.972 -3.975 18.424 hybrid contribution -1.173 0.812 -0.147 1.435 sum -0.373 -17.160 -4.122 17.652 Atomic orbital electron populations 1.69954 1.06182 1.27431 1.49516 1.24968 0.94981 0.99326 0.94562 0.86325 0.79765 0.82080 0.78341 1.20321 1.20935 1.19480 1.20666 0.93511 0.88631 1.52514 0.91361 1.21074 0.93503 0.90487 1.00215 1.86541 1.20494 1.01445 1.98076 1.23495 1.01299 0.96007 1.04929 1.21784 0.92006 0.81458 1.05965 1.45750 1.41520 1.26162 1.06841 1.22061 0.93452 0.93445 0.89809 1.20627 1.06145 1.00255 0.99521 1.21416 0.93682 0.96864 0.92004 1.22133 1.05239 0.99429 1.00067 1.17229 0.83005 0.85770 0.82942 1.90994 1.58325 1.63958 1.29499 0.92436 0.94547 0.94468 0.90578 0.90074 0.87320 0.88278 0.82023 0.83879 0.84996 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.09 13.29 55.43 0.74 -25.35 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.75 16 3 Si 0.91 21.38 29.54 -169.99 -5.02 16.36 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 7 C -0.51 -14.54 9.13 -34.44 -0.31 -14.85 16 8 H 0.07 1.92 7.71 -52.48 -0.40 1.52 16 9 C 0.09 2.46 5.70 36.01 0.21 2.67 16 10 S -0.29 -6.27 21.66 -107.50 -2.33 -8.60 16 11 C -0.11 -1.86 6.26 37.16 0.23 -1.62 16 12 C 0.11 1.53 5.34 -4.04 -0.02 1.51 16 13 N -0.49 -6.31 2.58 -119.77 -0.31 -6.62 16 14 C 0.14 1.28 10.28 -16.84 -0.17 1.10 16 15 C -0.24 -1.89 10.01 -39.88 -0.40 -2.29 16 16 C -0.02 -0.15 10.10 -39.51 -0.40 -0.55 16 17 C -0.25 -2.89 9.99 -39.38 -0.39 -3.29 16 18 C 0.51 7.74 7.41 -15.44 -0.11 7.63 16 19 O -0.55 -10.66 16.64 4.87 0.08 -10.58 16 20 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 21 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.04 1.03 8.14 -51.92 -0.42 0.61 16 23 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 24 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 25 H 0.11 1.71 7.39 -51.93 -0.38 1.33 16 26 H 0.10 1.11 8.01 -51.93 -0.42 0.70 16 27 H 0.16 0.98 8.04 -52.49 -0.42 0.56 16 28 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 29 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 30 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 280.90 15.07 4.23 4.23 Total: -1.00 -32.91 280.90 -7.80 -40.71 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -3.72 Total: -2.21 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -1.47 Total: -7.95 kcal Atomic # 7 Polarization: -32.40 SS G_CDS: 0.43 Total: -31.97 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -6.27 SS G_CDS: -2.33 Total: -8.60 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -32.91 -7.80 -40.71 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459110234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.622 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds