Wall clock time and date at job start Sun Mar 29 2020 22:00:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99641 * 2 1 4 4 H 1.48504 * 109.47146 * 269.99839 * 3 2 1 5 5 H 1.48495 * 109.47444 * 30.00036 * 3 2 1 6 6 H 1.48504 * 109.47131 * 150.00279 * 3 2 1 7 7 C 1.37868 * 120.00106 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00092 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00350 * 0.02562 * 7 2 1 10 10 S 1.81401 * 109.47119 * 179.97438 * 9 7 2 11 11 C 1.81404 * 102.99536 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46815 * 179.97438 * 11 10 9 13 13 N 1.46507 * 109.47241 * 180.02562 * 12 11 10 14 14 C 1.35763 * 119.62574 * 90.00014 * 13 12 11 15 15 C 1.35346 * 120.69997 * 180.27933 * 14 13 12 16 16 C 1.40202 * 119.94860 * 359.43664 * 15 14 13 17 17 C 1.36395 * 119.26120 * 0.57668 * 16 15 14 18 18 C 1.34664 * 119.61981 * 270.02413 * 13 12 11 19 19 O 1.22055 * 119.98569 * 359.97438 * 18 13 12 20 20 H 0.96995 * 120.00273 * 359.97438 * 1 2 3 21 21 H 1.08997 * 109.47100 * 59.99427 * 9 7 2 22 22 H 1.09001 * 109.46431 * 299.99580 * 9 7 2 23 23 H 1.09004 * 109.46772 * 60.00334 * 11 10 9 24 24 H 1.08991 * 109.47764 * 300.00116 * 11 10 9 25 25 H 1.08991 * 109.47264 * 60.00498 * 12 11 10 26 26 H 1.09001 * 109.47142 * 300.00134 * 12 11 10 27 27 H 1.08002 * 119.64669 * 359.97438 * 14 13 12 28 28 H 1.07996 * 120.02410 * 179.69320 * 15 14 13 29 29 H 1.08002 * 120.36615 * 180.31976 * 16 15 14 30 30 H 1.08002 * 120.34395 * 179.74309 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 16 2.4300 -3.8778 0.0005 11 6 1.3517 -5.3366 0.0013 12 6 2.2086 -6.6041 0.0008 13 7 1.3379 -7.7823 0.0008 14 6 0.9386 -8.3218 -1.1794 15 6 0.1297 -9.4066 -1.2047 16 6 -0.2946 -9.9916 -0.0033 17 6 0.1073 -9.4479 1.1813 18 6 0.9423 -8.3175 1.1715 19 8 1.3097 -7.8212 2.2242 20 1 -0.4850 0.8400 0.0004 21 1 0.6248 -2.5571 -0.8896 22 1 0.6242 -2.5566 0.8904 23 1 0.7223 -5.3236 -0.8885 24 1 0.7229 -5.3232 0.8914 25 1 2.8383 -6.6174 0.8903 26 1 2.8372 -6.6173 -0.8897 27 1 1.2659 -7.8775 -2.1078 28 1 -0.1853 -9.8239 -2.1497 29 1 -0.9358 -10.8605 -0.0157 30 1 -0.2125 -9.8819 2.1172 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001459110234.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:42 Heat of formation + Delta-G solvation = -32.620502 kcal Electronic energy + Delta-G solvation = -13984.376097 eV Core-core repulsion = 11484.252901 eV Total energy + Delta-G solvation = -2500.123196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 239.072 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.31617 -38.00136 -36.20014 -35.33229 -31.96324 -30.76030 -30.69380 -26.11843 -25.11572 -24.52097 -22.99673 -18.71261 -18.60717 -18.30142 -17.48827 -17.18894 -16.65210 -16.22558 -15.82214 -15.58079 -15.07553 -14.61266 -14.33936 -14.22660 -14.09506 -13.30302 -12.94699 -12.82848 -12.75299 -12.56144 -12.44686 -12.09440 -11.65833 -11.08246 -11.04720 -10.83432 -10.77480 -8.98240 -8.57665 -8.36547 -6.50793 -0.08003 0.68855 0.92887 1.39525 1.41257 1.53413 1.80181 1.88596 2.35240 2.67752 2.98375 3.54409 3.67831 3.82745 3.92399 4.14571 4.20051 4.29418 4.44367 4.61409 4.67734 4.86548 4.87737 5.07394 5.20301 5.39760 5.53496 5.67601 5.82745 6.10241 6.56891 6.97774 7.18043 8.75774 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.054120 B = 0.004280 C = 0.004252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.248050 B = 6540.401762 C = 6582.798682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.014 3.986 3 Si 0.980 3.020 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.265 1.265 7 C -0.539 4.539 8 H 0.066 0.934 9 C 0.092 3.908 10 S -0.284 6.284 11 C -0.093 4.093 12 C 0.119 3.881 13 N -0.493 5.493 14 C 0.126 3.874 15 C -0.227 4.227 16 C 0.009 3.991 17 C -0.283 4.283 18 C 0.488 3.512 19 O -0.614 6.614 20 H 0.271 0.729 21 H 0.021 0.979 22 H 0.007 0.993 23 H 0.095 0.905 24 H 0.054 0.946 25 H 0.085 0.915 26 H 0.136 0.864 27 H 0.199 0.801 28 H 0.186 0.814 29 H 0.172 0.828 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -19.765 -7.141 21.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.186 4.186 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.202 1.202 6 H -0.190 1.190 7 C -0.577 4.577 8 H 0.084 0.916 9 C -0.055 4.055 10 S -0.058 6.058 11 C -0.242 4.242 12 C -0.004 4.004 13 N -0.202 5.202 14 C 0.000 4.000 15 C -0.249 4.249 16 C -0.012 4.012 17 C -0.305 4.305 18 C 0.293 3.707 19 O -0.502 6.502 20 H 0.080 0.920 21 H 0.039 0.961 22 H 0.025 0.975 23 H 0.113 0.887 24 H 0.072 0.928 25 H 0.103 0.897 26 H 0.154 0.846 27 H 0.216 0.784 28 H 0.204 0.796 29 H 0.189 0.811 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 0.888 -19.298 -6.483 20.377 hybrid contribution -1.294 1.027 0.510 1.729 sum -0.405 -18.271 -5.973 19.226 Atomic orbital electron populations 1.70063 1.07814 1.28708 1.49931 1.25952 0.95887 1.03204 0.93604 0.85224 0.78381 0.77177 0.78958 1.18980 1.20162 1.18960 1.20993 0.93580 0.89998 1.53171 0.91625 1.20774 0.94078 0.92713 0.97960 1.86259 1.19948 1.01568 1.98002 1.23496 1.00859 0.95308 1.04512 1.21596 0.91593 0.80569 1.06595 1.45660 1.41337 1.25529 1.07706 1.22835 0.93678 0.94071 0.89420 1.21236 1.03944 0.98841 1.00851 1.21916 0.91724 0.96733 0.90860 1.22118 1.06871 0.99614 1.01850 1.17839 0.83415 0.86653 0.82792 1.90943 1.61321 1.66194 1.31757 0.91993 0.96081 0.97465 0.88656 0.92752 0.89702 0.84632 0.78373 0.79633 0.81076 0.83724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.06 13.29 21.44 0.28 -54.77 16 2 C 0.01 0.81 5.46 84.65 0.46 1.28 16 3 Si 0.98 43.79 29.54 68.60 2.03 45.82 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 7 C -0.54 -31.10 9.13 25.60 0.23 -30.87 16 8 H 0.07 3.74 7.71 -2.91 -0.02 3.72 16 9 C 0.09 5.02 5.70 71.24 0.41 5.42 16 10 S -0.28 -12.37 21.66 -56.49 -1.22 -13.59 16 11 C -0.09 -3.19 6.26 71.98 0.45 -2.74 16 12 C 0.12 3.24 5.34 86.38 0.46 3.71 16 13 N -0.49 -12.09 2.58 -650.97 -1.68 -13.77 16 14 C 0.13 1.81 10.28 83.42 0.86 2.67 16 15 C -0.23 -2.40 10.01 22.08 0.22 -2.18 16 16 C 0.01 0.13 10.10 22.32 0.23 0.35 16 17 C -0.28 -6.49 9.99 22.40 0.22 -6.26 16 18 C 0.49 15.24 7.41 84.82 0.63 15.87 16 19 O -0.61 -25.81 16.64 -5.49 -0.09 -25.90 16 20 H 0.27 14.98 8.31 -92.71 -0.77 14.20 16 21 H 0.02 1.17 8.14 -2.39 -0.02 1.15 16 22 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 23 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.08 2.76 7.39 -2.39 -0.02 2.75 16 26 H 0.14 2.69 8.01 -2.39 -0.02 2.67 16 27 H 0.20 1.34 8.04 -2.91 -0.02 1.32 16 28 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 29 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 30 H 0.14 3.18 8.06 -2.91 -0.02 3.15 16 Total: -1.00 -76.39 280.90 4.60 -71.78 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.12 Total: 3.19 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.17 Total: -12.75 kcal Atomic # 7 Polarization: -67.14 SS G_CDS: -1.40 Total: -68.54 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.09 Total: -25.90 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -12.37 SS G_CDS: -1.22 Total: -13.59 kcal Total: -76.39 4.60 -71.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459110234.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.164 kcal (2) G-P(sol) polarization free energy of solvation -76.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds