Wall clock time and date at job start Sun Mar 29 2020 22:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36889 * 119.99734 * 2 1 4 4 H 1.07997 * 120.00246 * 171.45660 * 3 2 1 5 5 C 1.39032 * 120.00187 * 351.44912 * 3 2 1 6 6 N 1.31373 * 119.99976 * 7.61709 * 5 3 2 7 7 Si 1.86800 * 120.00095 * 187.61057 * 5 3 2 8 8 H 1.48493 * 109.47107 * 60.00509 * 7 5 3 9 9 H 1.48500 * 109.47024 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47260 * 300.00254 * 7 5 3 11 11 C 1.34776 * 120.00045 * 180.02562 * 2 1 3 12 12 O 1.21612 * 119.99641 * 183.45779 * 11 2 1 13 13 C 1.47592 * 120.00098 * 3.72691 * 11 2 1 14 14 C 1.39772 * 120.14624 * 303.87604 * 13 11 2 15 15 C 1.37840 * 119.97346 * 179.76412 * 14 13 11 16 16 C 1.38426 * 120.27326 * 0.49337 * 15 14 13 17 17 C 1.38637 * 120.29441 * 359.77858 * 16 15 14 18 18 O 1.35967 * 119.98957 * 179.97438 * 17 16 15 19 19 C 1.38787 * 120.02344 * 359.96520 * 17 16 15 20 20 F 1.35105 * 120.13836 * 180.02562 * 19 17 16 21 21 H 1.08998 * 109.46469 * 176.78071 * 1 2 3 22 22 H 1.09000 * 109.46642 * 296.78105 * 1 2 3 23 23 H 1.08998 * 109.47158 * 56.77929 * 1 2 3 24 24 H 0.97005 * 119.99786 * 179.97438 * 6 5 3 25 25 H 1.07999 * 120.01729 * 0.02578 * 14 13 11 26 26 H 1.08002 * 119.86338 * 180.25545 * 15 14 13 27 27 H 1.08001 * 119.85355 * 179.76462 * 16 15 14 28 28 H 0.96700 * 114.00384 * 269.98182 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1495 1.1855 0.0000 4 1 3.2205 1.1908 0.1389 5 6 1.4659 2.3829 -0.1790 6 7 0.1523 2.3928 -0.1983 7 14 2.4152 3.9776 -0.3919 8 1 3.2859 3.8790 -1.5908 9 1 1.4610 5.1024 -0.5638 10 1 3.2531 4.2191 0.8100 11 6 2.1390 -1.1672 -0.0005 12 8 3.3534 -1.1681 0.0630 13 6 1.4034 -2.4440 -0.0842 14 6 0.4142 -2.7471 0.8556 15 6 -0.2739 -3.9385 0.7713 16 6 0.0172 -4.8427 -0.2355 17 6 1.0000 -4.5560 -1.1703 18 8 1.2813 -5.4490 -2.1564 19 6 1.6968 -3.3578 -1.1001 20 9 2.6547 -3.0759 -2.0102 21 1 -0.3632 -1.0261 -0.0577 22 1 -0.3632 0.4631 0.9175 23 1 -0.3633 0.5630 -0.8597 24 1 -0.3246 3.2283 -0.3229 25 1 0.1862 -2.0463 1.6452 26 1 -1.0408 -4.1690 1.4960 27 1 -0.5236 -5.7758 -0.2930 28 1 1.9674 -6.0893 -1.9233 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001542521754.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:28 Heat of formation + Delta-G solvation = -99.250378 kcal Electronic energy + Delta-G solvation = -16908.756798 eV Core-core repulsion = 13839.531138 eV Total energy + Delta-G solvation = -3069.225661 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -49.95327 -41.06725 -39.82877 -37.57504 -36.83472 -33.78749 -31.86747 -30.76179 -28.34091 -26.78525 -24.55869 -23.61845 -21.43887 -19.55023 -19.03046 -18.43565 -17.99315 -17.66851 -16.86537 -16.51182 -16.06680 -15.77165 -15.68936 -15.45157 -14.66158 -14.52655 -13.89173 -13.71665 -13.31258 -13.19894 -12.85020 -12.78202 -12.54999 -12.22631 -12.12855 -11.85986 -11.09803 -10.61353 -10.02927 -9.87387 -9.66589 -8.35268 -6.01005 -0.12330 0.03515 1.34542 1.37433 1.48541 1.83506 2.18595 2.47284 2.76657 3.05239 3.08299 3.33788 3.71112 3.97058 4.03218 4.29855 4.54977 4.67846 4.95146 5.00941 5.10038 5.19016 5.29916 5.34093 5.44229 5.70288 5.92210 6.35668 6.69550 7.02306 7.30538 7.85911 8.54623 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.040325 B = 0.007155 C = 0.006563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.195556 B = 3912.574124 C = 4265.282277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.441 5.441 3 C -0.349 4.349 4 H 0.077 0.923 5 C 0.002 3.998 6 N -0.885 5.885 7 Si 0.998 3.002 8 H -0.276 1.276 9 H -0.261 1.261 10 H -0.268 1.268 11 C 0.453 3.547 12 O -0.639 6.639 13 C -0.138 4.138 14 C -0.082 4.082 15 C -0.093 4.093 16 C -0.093 4.093 17 C 0.073 3.927 18 O -0.495 6.495 19 C 0.065 3.935 20 F -0.151 7.151 21 H 0.066 0.934 22 H 0.056 0.944 23 H 0.067 0.933 24 H 0.277 0.723 25 H 0.142 0.858 26 H 0.187 0.813 27 H 0.185 0.815 28 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.872 -12.533 1.814 14.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.156 5.156 3 C -0.477 4.477 4 H 0.095 0.905 5 C -0.201 4.201 6 N -0.523 5.523 7 Si 0.820 3.180 8 H -0.202 1.202 9 H -0.185 1.185 10 H -0.193 1.193 11 C 0.243 3.757 12 O -0.529 6.529 13 C -0.142 4.142 14 C -0.101 4.101 15 C -0.111 4.111 16 C -0.112 4.112 17 C 0.027 3.973 18 O -0.307 6.307 19 C 0.044 3.956 20 F -0.129 7.129 21 H 0.084 0.916 22 H 0.075 0.925 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.160 0.840 26 H 0.204 0.796 27 H 0.202 0.798 28 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -6.890 -12.014 1.478 13.928 hybrid contribution 1.421 0.967 -0.227 1.734 sum -5.469 -11.047 1.251 12.390 Atomic orbital electron populations 1.22027 0.78179 0.99214 1.03516 1.43877 1.07570 1.04433 1.59716 1.19768 0.93571 0.84017 1.50337 0.90482 1.26170 0.96911 1.02212 0.94764 1.70211 1.06724 1.28879 1.46529 0.84944 0.77918 0.76169 0.78976 1.20186 1.18517 1.19310 1.18374 0.87078 0.84415 0.85877 1.90565 1.15632 1.87683 1.59066 1.20038 1.00753 0.94888 0.98543 1.21456 0.92898 0.98819 0.96914 1.21506 0.99599 0.91182 0.98800 1.21822 0.95806 1.02051 0.91486 1.18413 0.97948 0.88476 0.92419 1.84818 1.62157 1.45507 1.38268 1.18665 0.90486 0.96862 0.89584 1.91433 1.62189 1.94037 1.65264 0.91595 0.92540 0.91417 0.91217 0.84011 0.79611 0.79810 0.72896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.26 8.15 127.77 1.04 6.31 15 2 N -0.44 -24.43 3.02 -662.45 -2.00 -26.43 15 3 C -0.35 -20.75 9.54 84.09 0.80 -19.95 15 4 H 0.08 4.90 7.19 -2.91 -0.02 4.88 15 5 C 0.00 0.10 5.45 84.95 0.46 0.56 15 6 N -0.88 -45.98 9.49 21.68 0.21 -45.78 15 7 Si 1.00 42.89 29.56 68.60 2.03 44.92 15 8 H -0.28 -12.07 7.11 99.48 0.71 -11.36 15 9 H -0.26 -10.28 7.11 99.48 0.71 -9.58 15 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 15 11 C 0.45 24.91 6.81 86.71 0.59 25.50 15 12 O -0.64 -40.67 16.51 -4.07 -0.07 -40.73 15 13 C -0.14 -5.85 4.81 -20.07 -0.10 -5.94 15 14 C -0.08 -2.53 7.42 22.55 0.17 -2.36 15 15 C -0.09 -1.88 10.02 22.22 0.22 -1.66 15 16 C -0.09 -1.86 9.97 22.41 0.22 -1.63 15 17 C 0.07 2.09 6.70 22.50 0.15 2.24 15 18 O -0.49 -12.15 13.37 -93.18 -1.25 -13.39 15 19 C 0.06 2.59 7.29 22.77 0.17 2.76 15 20 F -0.15 -7.06 16.54 44.97 0.74 -6.31 15 21 H 0.07 2.57 4.58 -2.39 -0.01 2.56 15 22 H 0.06 2.63 7.56 -2.39 -0.02 2.61 15 23 H 0.07 3.40 6.49 -2.39 -0.02 3.38 15 24 H 0.28 13.34 8.31 -92.70 -0.77 12.57 15 25 H 0.14 4.21 7.51 -2.91 -0.02 4.18 15 26 H 0.19 1.97 8.06 -2.91 -0.02 1.95 15 27 H 0.18 2.02 8.06 -2.91 -0.02 2.00 15 28 H 0.41 5.85 9.06 -74.06 -0.67 5.18 15 Total: -1.00 -78.10 252.80 3.94 -74.16 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: 0.55 Total: 7.75 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: 3.73 Total: 5.82 kcal Atomic # 7 Polarization: -70.41 SS G_CDS: -1.79 Total: -72.21 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -1.31 Total: -54.13 kcal Atomic # 9 Polarization: -7.06 SS G_CDS: 0.74 Total: -6.31 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 2.03 Total: 44.92 kcal Total: -78.10 3.94 -74.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542521754.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.089 kcal (2) G-P(sol) polarization free energy of solvation -78.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds