Wall clock time and date at job start Sun Mar 29 2020 22:00:00
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31413 * 1
3 3 Si 1.86804 * 119.99485 * 2 1
4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1
5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1
6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1
7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3
8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1
9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1
10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2
11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7
12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7
13 13 C 1.50703 * 109.47064 * 179.97438 * 12 10 9
14 14 C 1.38172 * 120.01277 * 264.72240 * 13 12 10
15 15 C 1.38432 * 120.03031 * 179.79239 * 14 13 12
16 16 F 1.35101 * 119.97184 * 180.25426 * 15 14 13
17 17 C 1.38482 * 120.05577 * 0.46314 * 15 14 13
18 18 C 1.38118 * 120.03175 * 359.78943 * 17 15 14
19 19 C 1.38676 * 120.01470 * 84.99834 * 13 12 10
20 20 O 1.35944 * 120.03666 * 359.97438 * 19 13 12
21 21 H 0.96993 * 120.00255 * 0.02562 * 1 2 3
22 22 H 0.96995 * 120.00282 * 359.97438 * 9 7 2
23 23 H 1.09002 * 109.47060 * 299.99722 * 12 10 9
24 24 H 1.09001 * 109.47380 * 59.99809 * 12 10 9
25 25 H 1.07999 * 119.98718 * 0.02562 * 14 13 12
26 26 H 1.08005 * 119.97977 * 179.76995 * 17 15 14
27 27 H 1.08004 * 120.01647 * 179.97438 * 18 17 15
28 28 H 0.96704 * 114.00161 * 89.99312 * 20 19 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3141 0.0000 0.0000
3 14 2.2480 1.6179 0.0000
4 1 2.4955 2.0465 -1.4000
5 1 1.4453 2.6527 0.7001
6 1 3.5455 1.4403 0.7001
7 6 2.0089 -1.2032 0.0005
8 1 1.4691 -2.1386 0.0005
9 7 3.3799 -1.2031 0.0011
10 6 4.0539 -2.3703 0.0011
11 8 3.4475 -3.4208 0.0011
12 6 5.5609 -2.3701 0.0022
13 6 6.0634 -3.7909 0.0026
14 6 6.3966 -4.4058 1.1943
15 6 6.8541 -5.7124 1.1954
16 9 7.1747 -6.3141 2.3617
17 6 6.9875 -6.4016 0.0018
18 6 6.6600 -5.7876 -1.1913
19 6 6.1969 -4.4798 -1.1935
20 8 5.8742 -3.8744 -2.3671
21 1 -0.4850 0.8400 -0.0004
22 1 3.8649 -0.3630 0.0007
23 1 5.9249 -1.8559 -0.8873
24 1 5.9236 -1.8566 0.8927
25 1 6.2966 -3.8682 2.1256
26 1 7.3481 -7.4197 0.0038
27 1 6.7646 -6.3252 -2.1222
28 1 6.6104 -3.4054 -2.7832
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001542735067.mol2 28
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 22:00:00
Heat of formation + Delta-G solvation = -98.506320 kcal
Electronic energy + Delta-G solvation = -16338.846955 eV
Core-core repulsion = 13269.653559 eV
Total energy + Delta-G solvation = -3069.193396 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 239.074 amu
Computer time = 0.19 seconds
Orbital eigenvalues (eV)
-48.79965 -39.89508 -38.06202 -36.36336 -34.03380 -32.54245 -31.61542 -29.51938
-27.62259 -24.56032 -22.72490 -21.76915 -19.38485 -18.44557 -18.26087 -16.97124
-16.71631 -16.03464 -15.46494 -15.19279 -14.87373 -14.27602 -14.01772 -13.56370
-13.51824 -13.01713 -12.72661 -12.63908 -12.08543 -11.71360 -11.59594 -11.49328
-11.12229 -10.59600 -10.37217 -9.96839 -9.56517 -9.00904 -8.52950 -8.28562
-8.17147 -6.29622 -3.81161 1.14985 1.24348 3.02710 3.07204 3.15414
3.49653 3.74899 4.10987 4.22357 4.30255 4.65387 4.82617 4.84592
5.11505 5.23161 5.40471 5.63537 5.68191 5.80670 5.94078 6.08598
6.14339 6.21406 6.51992 6.82232 7.57784 7.75281 8.15472 8.60152
8.96084 9.43325 9.83293 10.83623
Molecular weight = 239.07amu
Principal moments of inertia in cm(-1)
A = 0.038338 B = 0.005873 C = 0.005630
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 730.178883 B = 4766.770009 C = 4972.035508
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.882 5.882
2 C 0.041 3.959
3 Si 0.880 3.120
4 H -0.271 1.271
5 H -0.277 1.277
6 H -0.269 1.269
7 C -0.304 4.304
8 H 0.119 0.881
9 N -0.590 5.590
10 C 0.458 3.542
11 O -0.566 6.566
12 C -0.097 4.097
13 C -0.043 4.043
14 C -0.128 4.128
15 C 0.087 3.913
16 F -0.143 7.143
17 C -0.146 4.146
18 C -0.118 4.118
19 C 0.112 3.888
20 O -0.483 6.483
21 H 0.273 0.727
22 H 0.371 0.629
23 H 0.093 0.907
24 H 0.091 0.909
25 H 0.137 0.863
26 H 0.135 0.865
27 H 0.136 0.864
28 H 0.384 0.616
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 17.623 -4.654 -1.375 18.279
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.522 5.522
2 C -0.162 4.162
3 Si 0.707 3.293
4 H -0.196 1.196
5 H -0.202 1.202
6 H -0.195 1.195
7 C -0.433 4.433
8 H 0.137 0.863
9 N -0.229 5.229
10 C 0.244 3.756
11 O -0.448 6.448
12 C -0.137 4.137
13 C -0.044 4.044
14 C -0.147 4.147
15 C 0.068 3.932
16 F -0.121 7.121
17 C -0.165 4.165
18 C -0.137 4.137
19 C 0.067 3.933
20 O -0.293 6.293
21 H 0.084 0.916
22 H 0.203 0.797
23 H 0.111 0.889
24 H 0.109 0.891
25 H 0.155 0.845
26 H 0.153 0.847
27 H 0.154 0.846
28 H 0.239 0.761
Dipole moment (debyes) X Y Z Total
from point charges 16.438 -5.495 -1.221 17.375
hybrid contribution 0.958 1.486 0.116 1.772
sum 17.396 -4.009 -1.105 17.887
Atomic orbital electron populations
1.69622 1.05650 1.27473 1.49450 1.25038 0.95495 0.97965 0.97688
0.86666 0.79770 0.84035 0.78879 1.19607 1.20197 1.19478 1.19441
0.79242 0.96644 1.47978 0.86332 1.42182 1.07514 1.06040 1.67151
1.19479 0.87636 0.84592 0.83928 1.90593 1.69530 1.30969 1.53733
1.20518 0.96046 0.93185 1.03951 1.19557 0.96640 0.96140 0.92095
1.20889 1.01105 0.93724 0.98977 1.17586 1.02262 0.91970 0.81401
1.91478 1.90663 1.83434 1.46555 1.20899 1.03860 1.00768 0.90938
1.21179 0.99409 0.94781 0.98326 1.18243 0.97988 0.91528 0.85495
1.84993 1.38763 1.71223 1.34280 0.91625 0.79658 0.88889 0.89104
0.84477 0.84686 0.84591 0.76123
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.88 -26.01 13.96 55.50 0.77 -25.24 15
2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 15
3 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 15
4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15
5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15
6 H -0.27 -5.35 6.52 56.52 0.37 -4.99 15
7 C -0.30 -8.73 10.16 -14.94 -0.15 -8.89 15
8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 15
9 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 15
10 C 0.46 10.55 7.78 -10.98 -0.09 10.47 15
11 O -0.57 -15.72 15.61 5.55 0.09 -15.64 15
12 C -0.10 -1.56 5.55 -29.03 -0.16 -1.72 15
13 C -0.04 -0.69 4.39 -104.48 -0.46 -1.15 15
14 C -0.13 -1.93 9.65 -39.53 -0.38 -2.32 15
15 C 0.09 1.25 7.30 -39.42 -0.29 0.96 15
16 F -0.14 -2.04 17.27 2.25 0.04 -2.00 15
17 C -0.15 -1.84 10.02 -39.54 -0.40 -2.24 15
18 C -0.12 -1.53 9.98 -39.44 -0.39 -1.92 15
19 C 0.11 1.69 6.68 -39.24 -0.26 1.43 15
20 O -0.48 -6.93 12.64 -19.56 -0.25 -7.17 15
21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15
22 H 0.37 7.71 5.76 -40.82 -0.24 7.48 15
23 H 0.09 1.25 7.69 -51.93 -0.40 0.85 15
24 H 0.09 1.22 8.05 -51.93 -0.42 0.80 15
25 H 0.14 1.89 8.06 -52.49 -0.42 1.46 15
26 H 0.14 1.34 8.06 -52.48 -0.42 0.91 15
27 H 0.14 1.40 8.06 -52.48 -0.42 0.98 15
28 H 0.38 3.12 9.06 45.56 0.41 3.54 15
LS Contribution 260.47 15.07 3.93 3.93
Total: -1.00 -35.21 260.47 -4.33 -39.54
By element:
Atomic # 1 Polarization: 11.97 SS G_CDS: -1.46 Total: 10.51 kcal
Atomic # 6 Polarization: -1.67 SS G_CDS: -2.67 Total: -4.34 kcal
Atomic # 7 Polarization: -40.19 SS G_CDS: 0.72 Total: -39.48 kcal
Atomic # 8 Polarization: -22.65 SS G_CDS: -0.16 Total: -22.81 kcal
Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal
Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal
Total LS contribution 3.93 Total: 3.93 kcal
Total: -35.21 -4.33 -39.54 kcal
The number of atoms in the molecule is 28
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001542735067.mol2 28
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -58.964 kcal
(2) G-P(sol) polarization free energy of solvation -35.212 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.176 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.330 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.506 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.19 seconds