Wall clock time and date at job start Sun Mar 29 2020 22:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31413 * 1 3 3 Si 1.86804 * 119.99485 * 2 1 4 4 H 1.48494 * 109.47177 * 269.99875 * 3 2 1 5 5 H 1.48505 * 109.47036 * 30.00159 * 3 2 1 6 6 H 1.48499 * 109.46776 * 149.99648 * 3 2 1 7 7 C 1.38941 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00369 * 0.02562 * 7 2 1 9 9 N 1.37101 * 119.99927 * 180.02562 * 7 2 1 10 10 C 1.34780 * 119.99707 * 180.02562 * 9 7 2 11 11 O 1.21294 * 120.00356 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99795 * 180.02562 * 10 9 7 13 13 C 1.50703 * 109.47064 * 179.97438 * 12 10 9 14 14 C 1.38172 * 120.01277 * 264.72240 * 13 12 10 15 15 C 1.38432 * 120.03031 * 179.79239 * 14 13 12 16 16 F 1.35101 * 119.97184 * 180.25426 * 15 14 13 17 17 C 1.38482 * 120.05577 * 0.46314 * 15 14 13 18 18 C 1.38118 * 120.03175 * 359.78943 * 17 15 14 19 19 C 1.38676 * 120.01470 * 84.99834 * 13 12 10 20 20 O 1.35944 * 120.03666 * 359.97438 * 19 13 12 21 21 H 0.96993 * 120.00255 * 0.02562 * 1 2 3 22 22 H 0.96995 * 120.00282 * 359.97438 * 9 7 2 23 23 H 1.09002 * 109.47060 * 299.99722 * 12 10 9 24 24 H 1.09001 * 109.47380 * 59.99809 * 12 10 9 25 25 H 1.07999 * 119.98718 * 0.02562 * 14 13 12 26 26 H 1.08005 * 119.97977 * 179.76995 * 17 15 14 27 27 H 1.08004 * 120.01647 * 179.97438 * 18 17 15 28 28 H 0.96704 * 114.00161 * 89.99312 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6179 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4453 2.6527 0.7001 6 1 3.5455 1.4403 0.7001 7 6 2.0089 -1.2032 0.0005 8 1 1.4691 -2.1386 0.0005 9 7 3.3799 -1.2031 0.0011 10 6 4.0539 -2.3703 0.0011 11 8 3.4475 -3.4208 0.0011 12 6 5.5609 -2.3701 0.0022 13 6 6.0634 -3.7909 0.0026 14 6 6.3966 -4.4058 1.1943 15 6 6.8541 -5.7124 1.1954 16 9 7.1747 -6.3141 2.3617 17 6 6.9875 -6.4016 0.0018 18 6 6.6600 -5.7876 -1.1913 19 6 6.1969 -4.4798 -1.1935 20 8 5.8742 -3.8744 -2.3671 21 1 -0.4850 0.8400 -0.0004 22 1 3.8649 -0.3630 0.0007 23 1 5.9249 -1.8559 -0.8873 24 1 5.9236 -1.8566 0.8927 25 1 6.2966 -3.8682 2.1256 26 1 7.3481 -7.4197 0.0038 27 1 6.7646 -6.3252 -2.1222 28 1 6.6104 -3.4054 -2.7832 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001542735067.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:00 Heat of formation + Delta-G solvation = -98.506320 kcal Electronic energy + Delta-G solvation = -16338.846955 eV Core-core repulsion = 13269.653559 eV Total energy + Delta-G solvation = -3069.193396 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.79965 -39.89508 -38.06202 -36.36336 -34.03380 -32.54245 -31.61542 -29.51938 -27.62259 -24.56032 -22.72490 -21.76915 -19.38485 -18.44557 -18.26087 -16.97124 -16.71631 -16.03464 -15.46494 -15.19279 -14.87373 -14.27602 -14.01772 -13.56370 -13.51824 -13.01713 -12.72661 -12.63908 -12.08543 -11.71360 -11.59594 -11.49328 -11.12229 -10.59600 -10.37217 -9.96839 -9.56517 -9.00904 -8.52950 -8.28562 -8.17147 -6.29622 -3.81161 1.14985 1.24348 3.02710 3.07204 3.15414 3.49653 3.74899 4.10987 4.22357 4.30255 4.65387 4.82617 4.84592 5.11505 5.23161 5.40471 5.63537 5.68191 5.80670 5.94078 6.08598 6.14339 6.21406 6.51992 6.82232 7.57784 7.75281 8.15472 8.60152 8.96084 9.43325 9.83293 10.83623 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.038338 B = 0.005873 C = 0.005630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.178883 B = 4766.770009 C = 4972.035508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.041 3.959 3 Si 0.880 3.120 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.304 4.304 8 H 0.119 0.881 9 N -0.590 5.590 10 C 0.458 3.542 11 O -0.566 6.566 12 C -0.097 4.097 13 C -0.043 4.043 14 C -0.128 4.128 15 C 0.087 3.913 16 F -0.143 7.143 17 C -0.146 4.146 18 C -0.118 4.118 19 C 0.112 3.888 20 O -0.483 6.483 21 H 0.273 0.727 22 H 0.371 0.629 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.137 0.863 26 H 0.135 0.865 27 H 0.136 0.864 28 H 0.384 0.616 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.623 -4.654 -1.375 18.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.162 4.162 3 Si 0.707 3.293 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.433 4.433 8 H 0.137 0.863 9 N -0.229 5.229 10 C 0.244 3.756 11 O -0.448 6.448 12 C -0.137 4.137 13 C -0.044 4.044 14 C -0.147 4.147 15 C 0.068 3.932 16 F -0.121 7.121 17 C -0.165 4.165 18 C -0.137 4.137 19 C 0.067 3.933 20 O -0.293 6.293 21 H 0.084 0.916 22 H 0.203 0.797 23 H 0.111 0.889 24 H 0.109 0.891 25 H 0.155 0.845 26 H 0.153 0.847 27 H 0.154 0.846 28 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 16.438 -5.495 -1.221 17.375 hybrid contribution 0.958 1.486 0.116 1.772 sum 17.396 -4.009 -1.105 17.887 Atomic orbital electron populations 1.69622 1.05650 1.27473 1.49450 1.25038 0.95495 0.97965 0.97688 0.86666 0.79770 0.84035 0.78879 1.19607 1.20197 1.19478 1.19441 0.79242 0.96644 1.47978 0.86332 1.42182 1.07514 1.06040 1.67151 1.19479 0.87636 0.84592 0.83928 1.90593 1.69530 1.30969 1.53733 1.20518 0.96046 0.93185 1.03951 1.19557 0.96640 0.96140 0.92095 1.20889 1.01105 0.93724 0.98977 1.17586 1.02262 0.91970 0.81401 1.91478 1.90663 1.83434 1.46555 1.20899 1.03860 1.00768 0.90938 1.21179 0.99409 0.94781 0.98326 1.18243 0.97988 0.91528 0.85495 1.84993 1.38763 1.71223 1.34280 0.91625 0.79658 0.88889 0.89104 0.84477 0.84686 0.84591 0.76123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.01 13.96 55.50 0.77 -25.24 15 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 15 3 Si 0.88 19.37 27.74 -169.99 -4.71 14.65 15 4 H -0.27 -5.82 7.11 56.52 0.40 -5.42 15 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 15 6 H -0.27 -5.35 6.52 56.52 0.37 -4.99 15 7 C -0.30 -8.73 10.16 -14.94 -0.15 -8.89 15 8 H 0.12 3.91 7.39 -52.49 -0.39 3.52 15 9 N -0.59 -14.18 5.09 -10.96 -0.06 -14.24 15 10 C 0.46 10.55 7.78 -10.98 -0.09 10.47 15 11 O -0.57 -15.72 15.61 5.55 0.09 -15.64 15 12 C -0.10 -1.56 5.55 -29.03 -0.16 -1.72 15 13 C -0.04 -0.69 4.39 -104.48 -0.46 -1.15 15 14 C -0.13 -1.93 9.65 -39.53 -0.38 -2.32 15 15 C 0.09 1.25 7.30 -39.42 -0.29 0.96 15 16 F -0.14 -2.04 17.27 2.25 0.04 -2.00 15 17 C -0.15 -1.84 10.02 -39.54 -0.40 -2.24 15 18 C -0.12 -1.53 9.98 -39.44 -0.39 -1.92 15 19 C 0.11 1.69 6.68 -39.24 -0.26 1.43 15 20 O -0.48 -6.93 12.64 -19.56 -0.25 -7.17 15 21 H 0.27 7.42 8.31 -40.82 -0.34 7.08 15 22 H 0.37 7.71 5.76 -40.82 -0.24 7.48 15 23 H 0.09 1.25 7.69 -51.93 -0.40 0.85 15 24 H 0.09 1.22 8.05 -51.93 -0.42 0.80 15 25 H 0.14 1.89 8.06 -52.49 -0.42 1.46 15 26 H 0.14 1.34 8.06 -52.48 -0.42 0.91 15 27 H 0.14 1.40 8.06 -52.48 -0.42 0.98 15 28 H 0.38 3.12 9.06 45.56 0.41 3.54 15 LS Contribution 260.47 15.07 3.93 3.93 Total: -1.00 -35.21 260.47 -4.33 -39.54 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -1.46 Total: 10.51 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -2.67 Total: -4.34 kcal Atomic # 7 Polarization: -40.19 SS G_CDS: 0.72 Total: -39.48 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.16 Total: -22.81 kcal Atomic # 9 Polarization: -2.04 SS G_CDS: 0.04 Total: -2.00 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -4.71 Total: 14.65 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -35.21 -4.33 -39.54 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001542735067.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.964 kcal (2) G-P(sol) polarization free energy of solvation -35.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds