Wall clock time and date at job start Sun Mar 29 2020 21:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00074 * 2 1 4 4 H 1.48500 * 109.46869 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47383 * 300.00334 * 3 2 1 6 6 H 1.48500 * 109.47270 * 60.00349 * 3 2 1 7 7 C 1.38812 * 119.99438 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99389 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00422 * 359.97438 * 7 2 1 10 10 C 1.46500 * 119.99983 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47092 * 324.99883 * 10 9 7 12 12 C 1.50703 * 109.47155 * 84.99922 * 10 9 7 13 13 O 1.20824 * 119.99775 * 0.02562 * 12 10 9 14 14 O 1.34231 * 120.00026 * 180.02562 * 12 10 9 15 15 C 1.50701 * 109.47209 * 204.99924 * 10 9 7 16 16 C 1.38250 * 119.97173 * 319.72743 * 15 10 9 17 17 C 1.38197 * 120.02190 * 179.72307 * 16 15 10 18 18 C 1.38460 * 119.97508 * 0.53107 * 17 16 15 19 19 F 1.35097 * 120.02687 * 179.72509 * 18 17 16 20 20 C 1.38458 * 119.94916 * 359.74186 * 18 17 16 21 21 C 1.38200 * 119.97538 * 0.02562 * 20 18 17 22 22 H 0.97001 * 120.00131 * 359.97438 * 1 2 3 23 23 H 0.96997 * 119.99743 * 0.02562 * 9 7 2 24 24 H 0.96696 * 116.99892 * 180.02562 * 14 12 10 25 25 H 1.07999 * 119.98378 * 359.97438 * 16 15 10 26 26 H 1.08000 * 120.00982 * 180.29524 * 17 16 15 27 27 H 1.07999 * 120.01619 * 179.97438 * 20 18 17 28 28 H 1.07993 * 119.98817 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3881 -0.0005 10 6 2.0580 -3.6568 -0.0017 11 1 2.9682 -3.5503 -0.5918 12 6 2.4175 -4.0306 1.4133 13 8 2.0945 -3.3112 2.3288 14 8 3.0965 -5.1627 1.6566 15 6 1.1935 -4.7354 -0.6019 16 6 -0.1554 -4.7855 -0.3032 17 6 -0.9503 -5.7708 -0.8576 18 6 -0.3931 -6.7145 -1.7038 19 9 -1.1681 -7.6814 -2.2419 20 6 0.9591 -6.6667 -1.9978 21 6 1.7511 -5.6776 -1.4460 22 1 -0.4850 0.8400 0.0004 23 1 0.3555 -2.3880 -0.0005 24 1 3.3039 -5.3603 2.5801 25 1 -0.5889 -4.0520 0.3605 26 1 -2.0050 -5.8069 -0.6278 27 1 1.3949 -7.4024 -2.6574 28 1 2.8058 -5.6404 -1.6749 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594609606.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:29 Heat of formation + Delta-G solvation = -118.006948 kcal Electronic energy + Delta-G solvation = -16525.477541 eV Core-core repulsion = 13455.438534 eV Total energy + Delta-G solvation = -3070.039007 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.86535 -41.29909 -39.83532 -37.11472 -36.34484 -33.89170 -32.12439 -31.19684 -27.98569 -25.59561 -23.93707 -23.40771 -21.55610 -19.59586 -18.93206 -18.54089 -17.55055 -17.24991 -17.07688 -16.54428 -16.44828 -15.78872 -15.49270 -15.16039 -14.44171 -14.37463 -14.26755 -13.78167 -13.20306 -13.09871 -12.87505 -12.57817 -12.29878 -12.17890 -11.94333 -11.82973 -11.70681 -11.06595 -10.03271 -9.57147 -9.26578 -8.02886 -5.35032 0.10673 0.30829 1.44011 1.46723 1.48589 1.58031 2.25245 2.49464 2.71035 3.28141 3.39026 3.70806 3.74721 3.87735 4.00300 4.31086 4.39164 4.58298 4.76011 4.96616 5.02013 5.16327 5.26868 5.42485 5.56571 5.78013 5.93031 6.15016 7.22731 7.24269 7.85029 8.10349 9.19847 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.027616 B = 0.007078 C = 0.006192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1013.655434 B = 3955.167187 C = 4520.660371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.962 5.962 2 C -0.063 4.063 3 Si 0.976 3.024 4 H -0.263 1.263 5 H -0.287 1.287 6 H -0.297 1.297 7 C -0.252 4.252 8 H 0.082 0.918 9 N -0.698 5.698 10 C 0.223 3.777 11 H 0.117 0.883 12 C 0.447 3.553 13 O -0.545 6.545 14 O -0.512 6.512 15 C -0.096 4.096 16 C -0.091 4.091 17 C -0.155 4.155 18 C 0.086 3.914 19 F -0.144 7.144 20 C -0.143 4.143 21 C -0.063 4.063 22 H 0.255 0.745 23 H 0.382 0.618 24 H 0.412 0.588 25 H 0.112 0.888 26 H 0.146 0.854 27 H 0.168 0.832 28 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.059 -14.725 -3.397 15.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.611 5.611 2 C -0.256 4.256 3 Si 0.805 3.195 4 H -0.187 1.187 5 H -0.213 1.213 6 H -0.224 1.224 7 C -0.383 4.383 8 H 0.100 0.900 9 N -0.337 5.337 10 C 0.109 3.891 11 H 0.134 0.866 12 C 0.286 3.714 13 O -0.434 6.434 14 O -0.324 6.324 15 C -0.097 4.097 16 C -0.110 4.110 17 C -0.173 4.173 18 C 0.067 3.933 19 F -0.122 7.122 20 C -0.162 4.162 21 C -0.082 4.082 22 H 0.063 0.937 23 H 0.216 0.784 24 H 0.272 0.728 25 H 0.130 0.870 26 H 0.164 0.836 27 H 0.186 0.814 28 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 3.980 -14.322 -3.583 15.291 hybrid contribution -0.392 0.988 1.085 1.519 sum 3.589 -13.334 -2.499 14.033 Atomic orbital electron populations 1.69816 1.06743 1.26488 1.58032 1.25612 0.96386 1.01306 1.02284 0.85050 0.78428 0.79394 0.76671 1.18693 1.21335 1.22437 1.19624 0.91651 0.84593 1.42442 0.90041 1.42523 1.05884 0.99793 1.85496 1.18996 0.96825 0.85316 0.87955 0.86558 1.26256 0.72960 0.77179 0.94962 1.90669 1.52356 1.52543 1.47866 1.84588 1.69150 1.41389 1.37224 1.19765 0.93920 0.96524 0.99539 1.20854 0.93711 0.97294 0.99109 1.21175 1.01627 0.95402 0.99143 1.17856 0.89903 0.88360 0.97163 1.91476 1.75106 1.61183 1.84482 1.21381 0.91253 1.01073 1.02471 1.21120 1.01558 0.91753 0.93734 0.93657 0.78374 0.72805 0.86974 0.83613 0.81431 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.33 13.06 21.65 0.28 -58.05 15 2 C -0.06 -3.56 5.50 84.86 0.47 -3.10 15 3 Si 0.98 45.72 29.55 68.60 2.03 47.75 15 4 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 5 H -0.29 -13.18 7.11 99.48 0.71 -12.47 15 6 H -0.30 -14.17 7.11 99.48 0.71 -13.47 15 7 C -0.25 -13.76 9.81 84.03 0.82 -12.94 15 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 15 9 N -0.70 -34.59 4.59 -330.08 -1.52 -36.10 15 10 C 0.22 8.48 3.00 43.50 0.13 8.61 15 11 H 0.12 3.98 7.94 -2.39 -0.02 3.96 15 12 C 0.45 17.15 7.64 71.24 0.54 17.69 15 13 O -0.55 -26.24 17.10 21.97 0.38 -25.87 15 14 O -0.51 -14.19 13.34 -51.42 -0.69 -14.87 15 15 C -0.10 -3.08 4.88 -19.86 -0.10 -3.18 15 16 C -0.09 -3.03 9.04 22.26 0.20 -2.83 15 17 C -0.15 -4.37 10.03 22.31 0.22 -4.15 15 18 C 0.09 2.22 7.30 22.38 0.16 2.38 15 19 F -0.14 -3.64 17.27 44.97 0.78 -2.87 15 20 C -0.14 -3.15 10.03 22.31 0.22 -2.92 15 21 C -0.06 -1.53 9.67 22.26 0.22 -1.32 15 22 H 0.25 14.90 8.31 -92.71 -0.77 14.13 15 23 H 0.38 20.31 6.08 -92.71 -0.56 19.75 15 24 H 0.41 7.98 9.10 -74.06 -0.67 7.31 15 25 H 0.11 4.25 6.93 -2.91 -0.02 4.23 15 26 H 0.15 3.61 8.06 -2.91 -0.02 3.58 15 27 H 0.17 2.54 8.06 -2.91 -0.02 2.52 15 28 H 0.17 2.97 8.04 -2.91 -0.02 2.95 15 Total: -1.00 -69.99 263.47 4.14 -65.85 By element: Atomic # 1 Polarization: 25.93 SS G_CDS: -0.02 Total: 25.91 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 2.90 Total: -1.75 kcal Atomic # 7 Polarization: -92.92 SS G_CDS: -1.23 Total: -94.15 kcal Atomic # 8 Polarization: -40.43 SS G_CDS: -0.31 Total: -40.74 kcal Atomic # 9 Polarization: -3.64 SS G_CDS: 0.78 Total: -2.87 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -69.99 4.14 -65.85 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594609606.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.154 kcal (2) G-P(sol) polarization free energy of solvation -69.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds