Wall clock time and date at job start Sun Mar 29 2020 22:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31387 * 1 3 3 Si 1.86797 * 120.00043 * 2 1 4 4 H 1.48498 * 109.47367 * 0.02562 * 3 2 1 5 5 H 1.48498 * 109.46998 * 120.00083 * 3 2 1 6 6 H 1.48502 * 109.47536 * 239.99976 * 3 2 1 7 7 C 1.39014 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99937 * 186.70432 * 7 2 1 9 9 N 1.36918 * 120.00013 * 6.69985 * 7 2 1 10 10 C 1.34783 * 120.00161 * 44.77097 * 9 7 2 11 11 O 1.21608 * 119.99566 * 5.41686 * 10 9 7 12 12 C 1.47518 * 120.00241 * 185.41417 * 10 9 7 13 13 N 1.31917 * 126.46175 * 4.11506 * 12 10 9 14 14 N 1.28470 * 110.14137 * 179.87873 * 13 12 10 15 15 H 0.97009 * 124.93036 * 180.14198 * 14 13 12 16 16 C 1.35741 * 110.14436 * 0.39360 * 14 13 12 17 17 C 1.35522 * 107.12915 * 359.76416 * 16 14 13 18 18 F 1.35102 * 127.24461 * 179.97438 * 17 16 14 19 19 C 1.46499 * 120.00155 * 224.77853 * 9 7 2 20 20 C 1.53004 * 117.50077 * 2.13390 * 19 9 7 21 21 C 1.53003 * 117.49565 * 293.47602 * 19 9 7 22 22 H 0.97003 * 119.99878 * 354.99620 * 1 2 3 23 23 H 1.08001 * 126.43999 * 179.76571 * 16 14 13 24 24 H 1.08996 * 115.55498 * 147.81227 * 19 9 7 25 25 H 1.09004 * 117.49086 * 0.02562 * 20 19 9 26 26 H 1.08999 * 117.49783 * 145.01962 * 20 19 9 27 27 H 1.08997 * 117.49881 * 214.97857 * 21 19 9 28 28 H 1.08997 * 117.49945 * 359.97438 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3139 0.0000 0.0000 3 14 2.2479 1.6177 0.0000 4 1 1.2829 2.7465 0.0006 5 1 3.1016 1.6963 1.2125 6 1 3.1017 1.6965 -1.2125 7 6 2.0090 -1.2039 -0.0005 8 1 3.0834 -1.2071 0.1086 9 7 1.3314 -2.3855 -0.1394 10 6 0.3658 -2.5031 -1.0723 11 8 0.1632 -1.5950 -1.8554 12 6 -0.4453 -3.7333 -1.1435 13 7 -0.3872 -4.7595 -0.3167 14 7 -1.2332 -5.6598 -0.6690 15 1 -1.3710 -6.5029 -0.2092 16 6 -1.9026 -5.2627 -1.7811 17 6 -1.4290 -4.0380 -2.1160 18 9 -1.8137 -3.2695 -3.1585 19 6 1.6559 -3.5221 0.7261 20 6 2.7264 -3.3104 1.7986 21 6 3.0365 -4.1615 0.5646 22 1 -0.4850 0.8369 0.0733 23 1 -2.6688 -5.8184 -2.3013 24 1 0.8220 -4.1802 0.9704 25 1 3.1889 -2.3253 1.8603 26 1 2.5969 -3.8294 2.7483 27 1 3.1109 -5.2401 0.7031 28 1 3.7031 -3.7368 -0.1859 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001597713689.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:59 Heat of formation + Delta-G solvation = 53.678399 kcal Electronic energy + Delta-G solvation = -17266.752347 eV Core-core repulsion = 14236.450927 eV Total energy + Delta-G solvation = -3030.301420 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.081 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -48.01679 -42.07271 -38.22527 -35.84666 -32.78550 -31.49386 -30.50407 -30.00124 -25.41340 -23.03213 -21.56992 -21.33843 -20.84116 -19.50997 -18.02935 -16.55027 -15.99064 -15.74673 -15.37897 -14.80547 -14.43336 -14.20341 -13.90428 -13.63530 -13.09326 -12.75978 -11.98632 -11.71897 -11.12688 -10.95146 -10.81604 -10.61002 -10.45847 -10.13182 -9.82319 -9.30712 -8.94629 -8.71239 -8.41998 -8.15633 -6.94703 -6.05014 -3.85784 2.05859 2.52719 3.09249 3.33953 3.39784 3.40881 4.24282 4.55081 4.64423 4.94337 5.02432 5.11348 5.35043 5.42583 5.64070 5.83854 5.89209 5.95320 6.29950 6.34774 6.56960 6.82004 6.99200 7.09305 7.31589 7.62575 8.18438 8.32150 9.08314 9.21567 9.65517 10.34624 11.02013 Molecular weight = 239.08amu Principal moments of inertia in cm(-1) A = 0.025259 B = 0.010550 C = 0.007923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.239572 B = 2653.426601 C = 3533.258612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.827 5.827 2 C 0.058 3.942 3 Si 0.919 3.081 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.333 4.333 8 H 0.081 0.919 9 N -0.413 5.413 10 C 0.548 3.452 11 O -0.511 6.511 12 C 0.019 3.981 13 N -0.255 5.255 14 N -0.393 5.393 15 H 0.446 0.554 16 C -0.052 4.052 17 C 0.024 3.976 18 F -0.106 7.106 19 C 0.071 3.929 20 C -0.180 4.180 21 C -0.207 4.207 22 H 0.266 0.734 23 H 0.187 0.813 24 H 0.139 0.861 25 H 0.104 0.896 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -11.906 1.202 12.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.152 4.152 3 Si 0.746 3.254 4 H -0.210 1.210 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.461 4.461 8 H 0.098 0.902 9 N -0.133 5.133 10 C 0.333 3.667 11 O -0.385 6.385 12 C -0.144 4.144 13 N -0.090 5.090 14 N -0.107 5.107 15 H 0.290 0.710 16 C -0.197 4.197 17 C -0.007 4.007 18 F -0.085 7.085 19 C -0.035 4.035 20 C -0.218 4.218 21 C -0.246 4.246 22 H 0.076 0.924 23 H 0.204 0.796 24 H 0.156 0.844 25 H 0.122 0.878 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -1.649 -11.591 1.588 11.814 hybrid contribution -0.301 0.642 -0.531 0.886 sum -1.950 -10.949 1.056 11.171 Atomic orbital electron populations 1.69854 1.06326 1.27597 1.42319 1.25388 0.95121 0.99487 0.95207 0.86157 0.79073 0.81595 0.78542 1.21047 1.20202 1.19892 1.18934 0.91212 0.82147 1.53787 0.90154 1.42525 1.33513 1.09708 1.27533 1.16439 0.83491 0.83562 0.83182 1.90664 1.68449 1.38443 1.40991 1.23225 1.00374 0.96695 0.94150 1.73740 1.12448 0.99145 1.23650 1.43105 1.28459 1.17608 1.21495 0.70956 1.22438 1.04480 0.97895 0.94912 1.17295 1.01022 0.91345 0.91002 1.91487 1.89767 1.73813 1.53434 1.22413 0.92150 0.92938 0.96027 1.23095 1.04698 1.01669 0.92325 1.23240 1.02473 0.97603 1.01310 0.92397 0.79594 0.84382 0.87757 0.89933 0.90023 0.89490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.27 11.12 55.50 0.62 -24.66 15 2 C 0.06 1.68 4.75 -17.45 -0.08 1.59 15 3 Si 0.92 22.04 29.56 -169.99 -5.03 17.02 15 4 H -0.29 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 6 H -0.27 -6.58 7.11 56.52 0.40 -6.18 15 7 C -0.33 -9.38 7.95 -14.99 -0.12 -9.50 15 8 H 0.08 2.16 7.18 -52.49 -0.38 1.78 15 9 N -0.41 -11.04 2.85 -108.90 -0.31 -11.35 15 10 C 0.55 15.33 6.76 -12.47 -0.08 15.24 15 11 O -0.51 -16.26 14.36 5.27 0.08 -16.19 15 12 C 0.02 0.43 6.88 -82.75 -0.57 -0.14 15 13 N -0.26 -4.71 8.65 33.42 0.29 -4.43 15 14 N -0.39 -5.17 6.86 30.63 0.21 -4.96 15 15 H 0.45 3.53 8.96 -190.43 -1.71 1.82 15 16 C -0.05 -0.72 12.06 -16.79 -0.20 -0.92 15 17 C 0.02 0.47 8.03 -39.25 -0.32 0.16 15 18 F -0.11 -2.32 17.04 2.25 0.04 -2.29 15 19 C 0.07 1.55 5.62 -67.93 -0.38 1.17 15 20 C -0.18 -3.44 9.80 -26.69 -0.26 -3.71 15 21 C -0.21 -3.86 10.38 -26.69 -0.28 -4.13 15 22 H 0.27 7.73 8.32 -40.82 -0.34 7.40 15 23 H 0.19 1.64 8.06 -52.49 -0.42 1.22 15 24 H 0.14 2.86 5.10 -51.93 -0.26 2.59 15 25 H 0.10 2.15 6.70 -51.93 -0.35 1.80 15 26 H 0.08 1.34 8.14 -51.93 -0.42 0.92 15 27 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 28 H 0.09 1.71 8.14 -51.93 -0.42 1.29 15 LS Contribution 252.75 15.07 3.81 3.81 Total: -1.00 -35.93 252.75 -6.11 -42.04 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -3.52 Total: 1.24 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -2.29 Total: -0.23 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.81 Total: -45.40 kcal Atomic # 8 Polarization: -16.26 SS G_CDS: 0.08 Total: -16.19 kcal Atomic # 9 Polarization: -2.32 SS G_CDS: 0.04 Total: -2.29 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -35.93 -6.11 -42.04 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001597713689.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.719 kcal (2) G-P(sol) polarization free energy of solvation -35.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds