Wall clock time and date at job start Sun Mar 29 2020 21:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33506 * 125.83264 * 2 1 4 4 C 1.34897 * 109.89326 * 179.97438 * 3 2 1 5 5 C 1.46602 * 125.65546 * 180.02562 * 4 3 2 6 6 O 1.21601 * 120.00035 * 179.97438 * 5 4 3 7 7 O 1.34882 * 119.99634 * 0.02562 * 5 4 3 8 8 C 1.36155 * 108.69448 * 0.02562 * 4 3 2 9 9 C 1.37914 * 125.82784 * 179.97438 * 2 1 3 10 10 C 1.47417 * 126.77504 * 0.02562 * 9 2 1 11 11 O 1.21623 * 120.00300 * 0.02605 * 10 9 2 12 12 N 1.34785 * 119.99860 * 180.02562 * 10 9 2 13 13 C 1.36967 * 119.99584 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00255 * 359.97438 * 13 12 10 15 15 C 1.38984 * 119.99797 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99883 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47344 * 59.99438 * 17 15 13 19 19 H 1.48496 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46923 * 299.99466 * 17 15 13 21 21 H 1.09003 * 109.46726 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47362 * 119.96807 * 1 2 3 23 23 H 1.08995 * 109.47402 * 239.97164 * 1 2 3 24 24 H 0.96698 * 116.99364 * 180.02562 * 7 5 4 25 25 H 1.07998 * 126.68920 * 179.73750 * 8 4 3 26 26 H 0.97000 * 119.99652 * 0.02562 * 12 10 9 27 27 H 0.96998 * 120.00368 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2885 1.0824 0.0000 4 6 3.5856 0.7119 0.0006 5 6 4.7345 1.6226 0.0013 6 8 5.8651 1.1751 0.0022 7 8 4.5372 2.9570 0.0019 8 6 3.6511 -0.6481 0.0004 9 6 2.3142 -1.1182 0.0005 10 6 1.8735 -2.5249 0.0006 11 8 0.6866 -2.7903 -0.0003 12 7 2.7859 -3.5170 0.0016 13 6 2.3763 -4.8240 0.0012 14 1 1.3223 -5.0596 0.0004 15 6 3.3171 -5.8470 0.0028 16 7 4.5995 -5.5603 0.0042 17 14 2.7586 -7.6295 0.0015 18 1 1.9448 -7.8924 -1.2125 19 1 3.9466 -8.5205 0.0030 20 1 1.9405 -7.8928 1.2125 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5133 -0.8902 23 1 -0.3634 -0.5142 0.8897 24 1 5.3254 3.5171 0.0020 25 1 4.5471 -1.2509 -0.0033 26 1 3.7325 -3.3053 0.0027 27 1 5.2562 -6.2742 0.0050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600825944.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:46 Heat of formation + Delta-G solvation = -119.514991 kcal Electronic energy + Delta-G solvation = -16339.658773 eV Core-core repulsion = 13257.181584 eV Total energy + Delta-G solvation = -3082.477190 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.55667 -39.91697 -38.02677 -36.22566 -34.13068 -32.94366 -31.88052 -31.16390 -27.75364 -25.37061 -23.56588 -22.18158 -20.69476 -19.48833 -18.35308 -17.72789 -17.34212 -16.56996 -15.53451 -15.25134 -15.09933 -14.52779 -14.01386 -13.60356 -13.38908 -13.04157 -12.89393 -12.64221 -12.52467 -11.72574 -11.71546 -11.57617 -11.14746 -10.98622 -10.50604 -10.31154 -9.82010 -9.54700 -8.64004 -8.36367 -8.08085 -6.54321 -3.90930 0.92927 2.00193 2.43539 2.88840 3.19038 3.21042 3.23177 3.26016 4.08296 4.25124 4.72722 4.83432 5.16949 5.26297 5.29851 5.56270 5.72386 5.80953 5.84535 6.24446 6.27612 6.28744 6.47733 7.01636 7.43628 7.76724 7.94046 8.48042 9.04244 9.40753 9.92988 10.62537 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.006297 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.689107 B = 4445.178693 C = 5329.724546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.082 3.918 3 O -0.150 6.150 4 C -0.094 4.094 5 C 0.575 3.425 6 O -0.497 6.497 7 O -0.508 6.508 8 C -0.071 4.071 9 C -0.209 4.209 10 C 0.497 3.503 11 O -0.595 6.595 12 N -0.541 5.541 13 C -0.299 4.299 14 H 0.108 0.892 15 C 0.025 3.975 16 N -0.891 5.891 17 Si 0.936 3.064 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 H 0.071 0.929 22 H 0.100 0.900 23 H 0.100 0.900 24 H 0.415 0.585 25 H 0.169 0.831 26 H 0.394 0.606 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.021 12.510 -0.007 12.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.026 3.974 3 O -0.045 6.045 4 C -0.143 4.143 5 C 0.420 3.580 6 O -0.386 6.386 7 O -0.320 6.320 8 C -0.091 4.091 9 C -0.214 4.214 10 C 0.284 3.716 11 O -0.482 6.482 12 N -0.175 5.175 13 C -0.429 4.429 14 H 0.126 0.874 15 C -0.179 4.179 16 N -0.530 5.530 17 Si 0.762 3.238 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 H 0.090 0.910 22 H 0.118 0.882 23 H 0.118 0.882 24 H 0.274 0.726 25 H 0.187 0.813 26 H 0.228 0.772 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.726 12.111 -0.008 12.233 hybrid contribution 1.196 -0.501 0.001 1.297 sum -0.531 11.610 -0.007 11.622 Atomic orbital electron populations 1.20457 0.83049 1.02835 1.05849 1.23482 0.94317 0.82607 0.97033 1.83904 1.15465 1.34569 1.70605 1.20175 0.81265 0.92253 1.20629 1.18863 0.86177 0.80468 0.72497 1.91007 1.22683 1.77823 1.47137 1.84671 1.43317 1.18077 1.85891 1.22177 0.98838 0.92066 0.96019 1.20913 0.91802 0.96310 1.12355 1.16657 0.86349 0.82516 0.86036 1.90596 1.16130 1.83509 1.57985 1.41760 1.08416 1.05503 1.61799 1.19747 0.95029 0.80564 1.47552 0.87436 1.25376 0.94806 1.00943 0.96757 1.69607 1.00296 1.34611 1.48511 0.85838 0.77940 0.80787 0.79237 1.19682 1.20820 1.19678 0.91010 0.88205 0.88202 0.72615 0.81325 0.77193 0.91392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.91 9.14 36.00 0.33 -0.59 15 2 C 0.08 1.39 7.41 -34.43 -0.26 1.14 15 3 O -0.15 -2.45 10.61 5.71 0.06 -2.39 15 4 C -0.09 -1.56 7.14 -36.96 -0.26 -1.83 15 5 C 0.58 8.43 8.31 34.10 0.28 8.71 15 6 O -0.50 -8.29 17.63 -19.34 -0.34 -8.63 15 7 O -0.51 -5.57 13.44 -42.60 -0.57 -6.14 15 8 C -0.07 -1.28 10.05 -39.01 -0.39 -1.67 15 9 C -0.21 -4.17 6.16 -104.95 -0.65 -4.82 15 10 C 0.50 12.00 7.77 -12.52 -0.10 11.90 15 11 O -0.59 -15.56 15.23 5.26 0.08 -15.48 15 12 N -0.54 -13.86 5.28 -11.95 -0.06 -13.92 15 13 C -0.30 -8.20 9.68 -14.98 -0.14 -8.35 15 14 H 0.11 3.03 7.15 -52.49 -0.38 2.65 15 15 C 0.02 0.65 5.50 -17.46 -0.10 0.55 15 16 N -0.89 -23.87 13.05 55.50 0.72 -23.15 15 17 Si 0.94 20.50 29.55 -169.99 -5.02 15.47 15 18 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 20 H -0.27 -5.89 7.11 56.52 0.40 -5.49 15 21 H 0.07 0.76 8.14 -51.93 -0.42 0.33 15 22 H 0.10 1.42 8.08 -51.93 -0.42 1.00 15 23 H 0.10 1.43 8.08 -51.93 -0.42 1.01 15 24 H 0.42 2.24 9.11 45.56 0.42 2.66 15 25 H 0.17 2.95 7.59 -52.49 -0.40 2.55 15 26 H 0.39 9.74 6.92 -40.82 -0.28 9.45 15 27 H 0.28 6.98 8.31 -40.82 -0.34 6.65 15 LS Contribution 260.67 15.07 3.93 3.93 Total: -1.00 -32.06 260.67 -3.53 -35.59 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -1.04 Total: 9.66 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: -1.28 Total: 5.06 kcal Atomic # 7 Polarization: -37.73 SS G_CDS: 0.66 Total: -37.07 kcal Atomic # 8 Polarization: -31.87 SS G_CDS: -0.77 Total: -32.64 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -32.06 -3.53 -35.59 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600825944.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.923 kcal (2) G-P(sol) polarization free energy of solvation -32.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds