Wall clock time and date at job start Sun Mar 29 2020 21:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.33506 * 125.83264 * 2 1 4 4 C 1.34897 * 109.89326 * 179.97438 * 3 2 1 5 5 C 1.46602 * 125.65546 * 180.02562 * 4 3 2 6 6 O 1.21601 * 120.00035 * 179.97438 * 5 4 3 7 7 O 1.34882 * 119.99634 * 0.02562 * 5 4 3 8 8 C 1.36155 * 108.69448 * 0.02562 * 4 3 2 9 9 C 1.37914 * 125.82784 * 179.97438 * 2 1 3 10 10 C 1.47417 * 126.77504 * 0.02562 * 9 2 1 11 11 O 1.21623 * 120.00300 * 0.02605 * 10 9 2 12 12 N 1.34785 * 119.99860 * 180.02562 * 10 9 2 13 13 C 1.36967 * 119.99584 * 180.02562 * 12 10 9 14 14 H 1.07997 * 120.00255 * 359.97438 * 13 12 10 15 15 C 1.38984 * 119.99797 * 180.02562 * 13 12 10 16 16 N 1.31410 * 119.99883 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00150 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47344 * 59.99438 * 17 15 13 19 19 H 1.48496 * 109.47159 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.46923 * 299.99466 * 17 15 13 21 21 H 1.09003 * 109.46726 * 359.97438 * 1 2 3 22 22 H 1.08996 * 109.47362 * 119.96807 * 1 2 3 23 23 H 1.08995 * 109.47402 * 239.97164 * 1 2 3 24 24 H 0.96698 * 116.99364 * 180.02562 * 7 5 4 25 25 H 1.07998 * 126.68920 * 179.73750 * 8 4 3 26 26 H 0.97000 * 119.99652 * 0.02562 * 12 10 9 27 27 H 0.96998 * 120.00368 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2885 1.0824 0.0000 4 6 3.5856 0.7119 0.0006 5 6 4.7345 1.6226 0.0013 6 8 5.8651 1.1751 0.0022 7 8 4.5372 2.9570 0.0019 8 6 3.6511 -0.6481 0.0004 9 6 2.3142 -1.1182 0.0005 10 6 1.8735 -2.5249 0.0006 11 8 0.6866 -2.7903 -0.0003 12 7 2.7859 -3.5170 0.0016 13 6 2.3763 -4.8240 0.0012 14 1 1.3223 -5.0596 0.0004 15 6 3.3171 -5.8470 0.0028 16 7 4.5995 -5.5603 0.0042 17 14 2.7586 -7.6295 0.0015 18 1 1.9448 -7.8924 -1.2125 19 1 3.9466 -8.5205 0.0030 20 1 1.9405 -7.8928 1.2125 21 1 -0.3633 1.0277 0.0005 22 1 -0.3634 -0.5133 -0.8902 23 1 -0.3634 -0.5142 0.8897 24 1 5.3254 3.5171 0.0020 25 1 4.5471 -1.2509 -0.0033 26 1 3.7325 -3.3053 0.0027 27 1 5.2562 -6.2742 0.0050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600825944.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:46 Heat of formation + Delta-G solvation = -143.357149 kcal Electronic energy + Delta-G solvation = -16340.692647 eV Core-core repulsion = 13257.181584 eV Total energy + Delta-G solvation = -3083.511063 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.067 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.94848 -41.05616 -39.94091 -37.28659 -36.10050 -34.46218 -33.35777 -32.95241 -29.06779 -27.25513 -24.98499 -23.65028 -22.15177 -20.96655 -20.09457 -19.21399 -18.71266 -17.88565 -17.29940 -16.44761 -16.43236 -16.41323 -15.75712 -15.29726 -14.85586 -14.45087 -14.26661 -14.14103 -13.82014 -13.51951 -12.94534 -12.87942 -12.75798 -12.45916 -12.18759 -12.12442 -11.59214 -11.19707 -10.60017 -10.11442 -9.74642 -8.52837 -5.99772 -0.36135 0.48295 1.17531 1.42531 1.45045 1.54299 1.63979 2.06161 2.27870 2.40203 3.05494 3.25682 3.52684 3.74587 3.97092 4.22500 4.46290 4.56034 4.66820 4.67313 4.93758 5.17732 5.31560 5.36823 5.66096 5.93969 6.49160 6.81142 7.02439 7.44050 7.97278 8.64418 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.031114 B = 0.006297 C = 0.005252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.689107 B = 4445.178693 C = 5329.724546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.106 3.894 3 O -0.137 6.137 4 C -0.089 4.089 5 C 0.588 3.412 6 O -0.519 6.519 7 O -0.493 6.493 8 C -0.080 4.080 9 C -0.248 4.248 10 C 0.502 3.498 11 O -0.619 6.619 12 N -0.556 5.556 13 C -0.336 4.336 14 H 0.091 0.909 15 C -0.013 4.013 16 N -0.916 5.916 17 Si 1.001 2.999 18 H -0.268 1.268 19 H -0.271 1.271 20 H -0.268 1.268 21 H 0.113 0.887 22 H 0.097 0.903 23 H 0.097 0.903 24 H 0.442 0.558 25 H 0.167 0.833 26 H 0.395 0.605 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.271 13.925 -0.007 13.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.050 3.950 3 O -0.031 6.031 4 C -0.138 4.138 5 C 0.433 3.567 6 O -0.411 6.411 7 O -0.308 6.308 8 C -0.100 4.100 9 C -0.252 4.252 10 C 0.291 3.709 11 O -0.508 6.508 12 N -0.190 5.190 13 C -0.465 4.465 14 H 0.109 0.891 15 C -0.213 4.213 16 N -0.556 5.556 17 Si 0.823 3.177 18 H -0.193 1.193 19 H -0.196 1.196 20 H -0.193 1.193 21 H 0.132 0.868 22 H 0.115 0.885 23 H 0.115 0.885 24 H 0.305 0.695 25 H 0.184 0.816 26 H 0.229 0.771 27 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.956 13.583 -0.008 13.723 hybrid contribution 1.241 -0.713 0.001 1.431 sum -0.715 12.871 -0.007 12.891 Atomic orbital electron populations 1.20630 0.80676 1.05528 1.05425 1.23968 0.95449 0.81822 0.93792 1.83952 1.15313 1.33848 1.69998 1.20404 0.81850 0.92165 1.19332 1.18485 0.84882 0.81416 0.71956 1.91014 1.23301 1.78548 1.48213 1.84607 1.45077 1.16292 1.84816 1.22130 0.98127 0.93064 0.96664 1.20591 0.93509 0.94794 1.16312 1.17207 0.85839 0.83943 0.83959 1.90555 1.17138 1.84528 1.58593 1.41796 1.08628 1.05470 1.63112 1.19783 0.94656 0.81959 1.50072 0.89143 1.26212 0.94729 1.04689 0.95687 1.69682 1.01075 1.35943 1.48894 0.84876 0.77844 0.75713 0.79261 1.19290 1.19600 1.19280 0.86792 0.88502 0.88504 0.69459 0.81566 0.77107 0.90963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.71 9.14 71.23 0.65 -1.06 15 2 C 0.11 3.46 7.41 25.61 0.19 3.65 15 3 O -0.14 -4.10 10.61 -0.58 -0.01 -4.11 15 4 C -0.09 -2.78 7.14 23.97 0.17 -2.61 15 5 C 0.59 15.85 8.31 70.00 0.58 16.44 15 6 O -0.52 -16.50 17.63 19.51 0.34 -16.15 15 7 O -0.49 -9.04 13.44 -56.42 -0.76 -9.79 15 8 C -0.08 -2.87 10.05 22.64 0.23 -2.64 15 9 C -0.25 -9.88 6.16 -20.08 -0.12 -10.00 15 10 C 0.50 24.85 7.77 86.66 0.67 25.52 15 11 O -0.62 -33.12 15.23 -4.10 -0.06 -33.19 15 12 N -0.56 -29.49 5.28 -309.97 -1.64 -31.12 15 13 C -0.34 -18.97 9.68 84.07 0.81 -18.15 15 14 H 0.09 5.30 7.15 -2.91 -0.02 5.28 15 15 C -0.01 -0.66 5.50 84.93 0.47 -0.20 15 16 N -0.92 -49.77 13.05 21.67 0.28 -49.49 15 17 Si 1.00 42.19 29.55 68.60 2.03 44.21 15 18 H -0.27 -11.06 7.11 99.48 0.71 -10.36 15 19 H -0.27 -10.84 7.11 99.48 0.71 -10.14 15 20 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 21 H 0.11 1.95 8.14 -2.39 -0.02 1.93 15 22 H 0.10 2.61 8.08 -2.39 -0.02 2.59 15 23 H 0.10 2.61 8.08 -2.39 -0.02 2.59 15 24 H 0.44 3.04 9.11 -74.06 -0.67 2.36 15 25 H 0.17 5.98 7.59 -2.91 -0.02 5.95 15 26 H 0.39 20.33 6.92 -92.71 -0.64 19.69 15 27 H 0.28 14.25 8.31 -92.71 -0.77 13.48 15 Total: -1.00 -69.44 260.67 3.78 -65.67 By element: Atomic # 1 Polarization: 23.10 SS G_CDS: -0.07 Total: 23.03 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 3.65 Total: 10.95 kcal Atomic # 7 Polarization: -79.26 SS G_CDS: -1.35 Total: -80.61 kcal Atomic # 8 Polarization: -62.76 SS G_CDS: -0.48 Total: -63.24 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.21 kcal Total: -69.44 3.78 -65.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600825944.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.691 kcal (2) G-P(sol) polarization free energy of solvation -69.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds