Wall clock time and date at job start Sun Mar 29 2020 21:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86807 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46926 * 300.00068 * 3 2 1 6 6 H 1.48500 * 109.46894 * 59.99818 * 3 2 1 7 7 C 1.40123 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00323 * 180.02562 * 7 2 1 9 9 C 1.46117 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.21767 * 119.99706 * 0.02562 * 9 7 2 11 11 N 1.34772 * 120.00034 * 179.97438 * 9 7 2 12 12 C 1.39678 * 119.99990 * 179.97438 * 11 9 7 13 13 C 1.40519 * 125.98615 * 0.02562 * 12 11 9 14 14 C 1.35179 * 107.87693 * 180.02562 * 13 12 11 15 15 N 1.35071 * 107.89810 * 0.24317 * 14 13 12 16 16 C 1.46505 * 125.96480 * 179.75156 * 15 14 13 17 17 C 1.50699 * 109.46491 * 125.00122 * 16 15 14 18 18 O 1.20828 * 120.00443 * 0.02562 * 17 16 15 19 19 O 1.34234 * 120.00094 * 180.02562 * 17 16 15 20 20 N 1.31413 * 125.99018 * 180.02562 * 12 11 9 21 21 H 0.96993 * 119.99904 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00462 * 0.02562 * 11 9 7 23 23 H 1.07998 * 126.06615 * 359.97438 * 13 12 11 24 24 H 1.08002 * 126.04652 * 179.97438 * 14 13 12 25 25 H 1.08995 * 109.47233 * 245.00002 * 16 15 14 26 26 H 1.08994 * 109.47130 * 5.00770 * 16 15 14 27 27 H 0.96696 * 117.00136 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8815 2.3964 -1.2124 6 1 1.8815 2.3965 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0871 -1.2135 0.0010 9 6 1.2765 -2.4789 0.0005 10 8 0.0588 -2.4789 -0.0004 11 7 1.9504 -3.6461 0.0005 12 6 1.2521 -4.8557 0.0011 13 6 -0.1454 -5.0024 0.0011 14 6 -0.4239 -6.3252 0.0023 15 7 0.7484 -6.9961 0.0084 16 6 0.9061 -8.4526 0.0168 17 6 1.7727 -8.8706 -1.1430 18 8 2.2139 -8.0374 -1.8987 19 8 2.0547 -10.1686 -1.3366 20 7 1.7869 -6.0561 0.0016 21 1 -0.4849 0.8400 -0.0004 22 1 2.9204 -3.6461 0.0009 23 1 -0.8688 -4.2005 0.0012 24 1 -1.4093 -6.7672 0.0031 25 1 1.3750 -8.7620 0.9508 26 1 -0.0724 -8.9245 -0.0723 27 1 2.6143 -10.3881 -2.0941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601060207.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:03 Heat of formation + Delta-G solvation = -35.866773 kcal Electronic energy + Delta-G solvation = -16249.710417 eV Core-core repulsion = 13203.153237 eV Total energy + Delta-G solvation = -3046.557180 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.78041 -39.90000 -37.41109 -36.19215 -33.82024 -32.55217 -31.82249 -29.29916 -27.47757 -26.08143 -22.32356 -21.32467 -20.38070 -19.08352 -18.17585 -17.20461 -16.89335 -16.40221 -16.11023 -15.40606 -14.90879 -14.31479 -14.07143 -13.21989 -13.11117 -12.77747 -12.48771 -12.21238 -12.03636 -11.59190 -11.28955 -11.13043 -10.71419 -10.62318 -10.28186 -9.89824 -9.72854 -8.92703 -8.07522 -7.70551 -7.21542 -6.33053 -4.79343 2.10309 2.21029 2.65239 3.07811 3.10800 3.17908 3.22772 3.67318 4.02315 4.50626 4.54620 4.73389 4.96156 5.05517 5.26731 5.71255 6.01551 6.34788 6.45029 6.65947 7.14910 7.32796 7.52378 7.63456 7.80344 8.07784 8.14252 8.44480 8.88015 9.33512 10.41042 10.59013 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.061790 B = 0.004923 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.037129 B = 5685.699802 C = 5999.052294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.087 3.913 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.533 4.533 8 H 0.074 0.926 9 C 0.551 3.449 10 O -0.556 6.556 11 N -0.657 5.657 12 C 0.333 3.667 13 C -0.246 4.246 14 C 0.041 3.959 15 N -0.392 5.392 16 C 0.163 3.837 17 C 0.456 3.544 18 O -0.477 6.477 19 O -0.523 6.523 20 N -0.340 5.340 21 H 0.271 0.729 22 H 0.397 0.603 23 H 0.177 0.823 24 H 0.169 0.831 25 H 0.118 0.882 26 H 0.131 0.869 27 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -15.005 0.233 15.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.387 5.387 2 C -0.134 4.134 3 Si 0.739 3.261 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.570 4.570 8 H 0.093 0.907 9 C 0.357 3.643 10 O -0.436 6.436 11 N -0.306 5.306 12 C 0.074 3.926 13 C -0.277 4.277 14 C -0.100 4.100 15 N -0.179 5.179 16 C 0.039 3.961 17 C 0.294 3.706 18 O -0.361 6.361 19 O -0.335 6.335 20 N -0.171 5.171 21 H 0.082 0.918 22 H 0.230 0.770 23 H 0.195 0.805 24 H 0.186 0.814 25 H 0.136 0.864 26 H 0.149 0.851 27 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 0.852 -15.234 0.346 15.262 hybrid contribution 0.593 0.933 -0.584 1.251 sum 1.445 -14.301 -0.238 14.376 Atomic orbital electron populations 1.69989 1.07146 1.27711 1.33894 1.25735 0.94728 1.00499 0.92482 0.86196 0.80503 0.81109 0.78320 1.18587 1.20008 1.20005 1.20815 0.93945 0.88551 1.53684 0.90739 1.18388 0.87425 0.81473 0.77032 1.90526 1.13676 1.85534 1.53889 1.43550 1.09500 1.01871 1.75672 1.19619 0.91655 0.86855 0.94463 1.22188 0.95824 0.95758 1.13924 1.22484 0.90665 0.92792 1.04106 1.47388 1.04296 1.03256 1.62923 1.20639 1.01188 0.78244 0.96061 1.23703 0.80212 0.80094 0.86584 1.90844 1.48308 1.52258 1.44684 1.84480 1.67647 1.28253 1.53143 1.77492 1.09386 0.96018 1.34233 0.91770 0.76973 0.80545 0.81389 0.86394 0.85098 0.72981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -21.92 11.82 55.55 0.66 -21.27 15 2 C 0.09 2.35 5.50 -17.35 -0.10 2.25 15 3 Si 0.91 19.62 29.56 -169.99 -5.02 14.60 15 4 H -0.26 -5.45 7.11 56.52 0.40 -5.05 15 5 H -0.27 -5.79 7.11 56.52 0.40 -5.39 15 6 H -0.27 -5.77 7.11 56.52 0.40 -5.36 15 7 C -0.53 -14.76 9.53 -35.72 -0.34 -15.10 15 8 H 0.07 1.89 7.85 -52.48 -0.41 1.47 15 9 C 0.55 15.65 7.70 -13.10 -0.10 15.55 15 10 O -0.56 -17.23 12.13 5.13 0.06 -17.17 15 11 N -0.66 -16.19 5.43 -12.51 -0.07 -16.26 15 12 C 0.33 7.86 8.10 -154.66 -1.25 6.61 15 13 C -0.25 -5.47 9.60 -39.81 -0.38 -5.85 15 14 C 0.04 0.69 11.43 -17.21 -0.20 0.49 15 15 N -0.39 -6.63 3.41 -62.55 -0.21 -6.84 15 16 C 0.16 1.78 7.10 -5.19 -0.04 1.74 15 17 C 0.46 5.71 8.36 36.00 0.30 6.01 15 18 O -0.48 -8.54 16.45 -18.75 -0.31 -8.85 15 19 O -0.52 -4.46 13.42 -39.27 -0.53 -4.98 15 20 N -0.34 -7.30 11.66 31.39 0.37 -6.93 15 21 H 0.27 7.06 8.29 -40.82 -0.34 6.72 15 22 H 0.40 8.75 8.80 -40.82 -0.36 8.39 15 23 H 0.18 4.36 5.90 -52.49 -0.31 4.05 15 24 H 0.17 1.97 8.06 -52.49 -0.42 1.54 15 25 H 0.12 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.13 0.85 8.07 -51.93 -0.42 0.43 15 27 H 0.41 2.01 9.10 45.56 0.41 2.42 15 LS Contribution 256.73 15.07 3.87 3.87 Total: -1.00 -37.95 256.73 -4.36 -42.31 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -1.06 Total: 9.83 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -2.10 Total: 11.70 kcal Atomic # 7 Polarization: -52.05 SS G_CDS: 0.74 Total: -51.30 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.77 Total: -31.00 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -37.95 -4.36 -42.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060207.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.442 kcal (2) G-P(sol) polarization free energy of solvation -37.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds