Wall clock time and date at job start Sun Mar 29 2020 21:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30635 * 1 3 3 Si 1.86807 * 119.99855 * 2 1 4 4 H 1.48499 * 109.47074 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.46926 * 300.00068 * 3 2 1 6 6 H 1.48500 * 109.46894 * 59.99818 * 3 2 1 7 7 C 1.40123 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00323 * 180.02562 * 7 2 1 9 9 C 1.46117 * 120.00120 * 0.02562 * 7 2 1 10 10 O 1.21767 * 119.99706 * 0.02562 * 9 7 2 11 11 N 1.34772 * 120.00034 * 179.97438 * 9 7 2 12 12 C 1.39678 * 119.99990 * 179.97438 * 11 9 7 13 13 C 1.40519 * 125.98615 * 0.02562 * 12 11 9 14 14 C 1.35179 * 107.87693 * 180.02562 * 13 12 11 15 15 N 1.35071 * 107.89810 * 0.24317 * 14 13 12 16 16 C 1.46505 * 125.96480 * 179.75156 * 15 14 13 17 17 C 1.50699 * 109.46491 * 125.00122 * 16 15 14 18 18 O 1.20828 * 120.00443 * 0.02562 * 17 16 15 19 19 O 1.34234 * 120.00094 * 180.02562 * 17 16 15 20 20 N 1.31413 * 125.99018 * 180.02562 * 12 11 9 21 21 H 0.96993 * 119.99904 * 0.02562 * 1 2 3 22 22 H 0.96998 * 120.00462 * 0.02562 * 11 9 7 23 23 H 1.07998 * 126.06615 * 359.97438 * 13 12 11 24 24 H 1.08002 * 126.04652 * 179.97438 * 14 13 12 25 25 H 1.08995 * 109.47233 * 245.00002 * 16 15 14 26 26 H 1.08994 * 109.47130 * 5.00770 * 16 15 14 27 27 H 0.96696 * 117.00136 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.7003 1.3465 0.0006 5 1 1.8815 2.3964 -1.2124 6 1 1.8815 2.3965 1.2125 7 6 2.0070 -1.2135 0.0005 8 1 3.0871 -1.2135 0.0010 9 6 1.2765 -2.4789 0.0005 10 8 0.0588 -2.4789 -0.0004 11 7 1.9504 -3.6461 0.0005 12 6 1.2521 -4.8557 0.0011 13 6 -0.1454 -5.0024 0.0011 14 6 -0.4239 -6.3252 0.0023 15 7 0.7484 -6.9961 0.0084 16 6 0.9061 -8.4526 0.0168 17 6 1.7727 -8.8706 -1.1430 18 8 2.2139 -8.0374 -1.8987 19 8 2.0547 -10.1686 -1.3366 20 7 1.7869 -6.0561 0.0016 21 1 -0.4849 0.8400 -0.0004 22 1 2.9204 -3.6461 0.0009 23 1 -0.8688 -4.2005 0.0012 24 1 -1.4093 -6.7672 0.0031 25 1 1.3750 -8.7620 0.9508 26 1 -0.0724 -8.9245 -0.0723 27 1 2.6143 -10.3881 -2.0941 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060207.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:02 Heat of formation + Delta-G solvation = -67.027923 kcal Electronic energy + Delta-G solvation = -16251.061666 eV Core-core repulsion = 13203.153237 eV Total energy + Delta-G solvation = -3047.908428 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.18031 -41.02746 -39.39492 -37.13067 -35.58417 -34.57657 -33.34732 -30.86235 -29.12006 -27.81480 -23.70480 -22.93412 -21.74472 -20.85273 -19.20962 -19.09661 -18.10751 -17.64116 -17.48089 -17.13045 -16.37721 -15.94048 -15.75383 -14.73944 -14.64912 -14.30961 -13.92207 -13.70899 -13.40798 -13.19437 -12.81905 -12.72210 -12.56552 -11.97608 -11.90624 -11.50171 -11.36946 -10.93677 -9.85588 -9.64572 -8.94877 -8.36924 -6.94735 0.87679 1.16062 1.36046 1.41024 1.44282 1.60817 1.91337 2.09640 2.25558 2.54309 2.90563 3.59588 3.81447 4.02809 4.21973 4.27783 4.55849 4.90478 5.04032 5.25831 5.48037 5.59082 5.68179 6.08245 6.20915 6.31054 6.68535 6.79639 6.96006 7.41745 8.32954 8.57023 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.061790 B = 0.004923 C = 0.004666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.037129 B = 5685.699802 C = 5999.052294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.031 3.969 3 Si 1.004 2.996 4 H -0.249 1.249 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.561 4.561 8 H 0.091 0.909 9 C 0.536 3.464 10 O -0.593 6.593 11 N -0.658 5.658 12 C 0.297 3.703 13 C -0.306 4.306 14 C 0.088 3.912 15 N -0.378 5.378 16 C 0.149 3.851 17 C 0.465 3.535 18 O -0.542 6.542 19 O -0.503 6.503 20 N -0.356 5.356 21 H 0.280 0.720 22 H 0.404 0.596 23 H 0.141 0.859 24 H 0.231 0.769 25 H 0.150 0.850 26 H 0.191 0.809 27 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.263 -16.890 0.599 16.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.185 4.185 3 Si 0.823 3.177 4 H -0.172 1.172 5 H -0.192 1.192 6 H -0.190 1.190 7 C -0.597 4.597 8 H 0.109 0.891 9 C 0.342 3.658 10 O -0.477 6.477 11 N -0.307 5.307 12 C 0.040 3.960 13 C -0.337 4.337 14 C -0.056 4.056 15 N -0.164 5.164 16 C 0.027 3.973 17 C 0.307 3.693 18 O -0.431 6.431 19 O -0.317 6.317 20 N -0.188 5.188 21 H 0.090 0.910 22 H 0.239 0.761 23 H 0.159 0.841 24 H 0.248 0.752 25 H 0.168 0.832 26 H 0.208 0.792 27 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 1.181 -17.230 0.717 17.285 hybrid contribution 0.475 1.162 -0.700 1.438 sum 1.656 -16.068 0.017 16.153 Atomic orbital electron populations 1.70129 1.09449 1.29477 1.34760 1.26992 0.95655 1.04835 0.91065 0.84870 0.79205 0.74892 0.78735 1.17164 1.19154 1.18963 1.21333 0.94980 0.89129 1.54306 0.89056 1.18752 0.87302 0.82845 0.76870 1.90502 1.15121 1.86515 1.55574 1.43139 1.09730 1.02065 1.75757 1.19829 0.92456 0.86988 0.96705 1.21981 0.94823 0.97727 1.19179 1.23097 0.92713 0.90824 0.98995 1.47837 1.03357 1.05219 1.60018 1.21425 1.04627 0.74487 0.96725 1.23912 0.79105 0.80441 0.85881 1.90854 1.51028 1.54083 1.47118 1.84433 1.67504 1.25805 1.53919 1.77372 1.11549 0.95881 1.33949 0.91020 0.76140 0.84111 0.75232 0.83240 0.79224 0.70866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.43 11.82 21.85 0.26 -48.17 15 2 C 0.03 1.72 5.50 85.33 0.47 2.19 15 3 Si 1.00 40.47 29.56 68.60 2.03 42.50 15 4 H -0.25 -9.37 7.11 99.48 0.71 -8.66 15 5 H -0.27 -10.33 7.11 99.48 0.71 -9.62 15 6 H -0.26 -10.18 7.11 99.48 0.71 -9.48 15 7 C -0.56 -32.11 9.53 24.77 0.24 -31.87 15 8 H 0.09 4.71 7.85 -2.91 -0.02 4.69 15 9 C 0.54 32.18 7.70 86.29 0.66 32.85 15 10 O -0.59 -39.22 12.13 -4.56 -0.06 -39.27 15 11 N -0.66 -34.23 5.43 -311.70 -1.69 -35.92 15 12 C 0.30 14.55 8.10 133.46 1.08 15.63 15 13 C -0.31 -14.02 9.60 22.12 0.21 -13.81 15 14 C 0.09 2.75 11.43 83.49 0.95 3.71 15 15 N -0.38 -11.79 3.41 -351.81 -1.20 -12.99 15 16 C 0.15 2.51 7.10 85.63 0.61 3.12 15 17 C 0.47 10.17 8.36 71.24 0.60 10.76 15 18 O -0.54 -18.79 16.45 21.96 0.36 -18.43 15 19 O -0.50 -6.61 13.42 -51.46 -0.69 -7.30 15 20 N -0.36 -15.24 11.66 -54.59 -0.64 -15.88 15 21 H 0.28 14.98 8.29 -92.71 -0.77 14.21 15 22 H 0.40 18.81 8.80 -92.71 -0.82 18.00 15 23 H 0.14 7.47 5.90 -2.91 -0.02 7.45 15 24 H 0.23 4.12 8.06 -2.91 -0.02 4.10 15 25 H 0.15 1.77 8.14 -2.39 -0.02 1.75 15 26 H 0.19 1.06 8.07 -2.39 -0.02 1.04 15 27 H 0.43 2.79 9.10 -74.06 -0.67 2.11 15 Total: -1.00 -90.24 256.73 2.96 -87.28 By element: Atomic # 1 Polarization: 25.83 SS G_CDS: -0.24 Total: 25.59 kcal Atomic # 6 Polarization: 17.76 SS G_CDS: 4.82 Total: 22.58 kcal Atomic # 7 Polarization: -109.69 SS G_CDS: -3.27 Total: -112.96 kcal Atomic # 8 Polarization: -64.61 SS G_CDS: -0.38 Total: -65.00 kcal Atomic # 14 Polarization: 40.47 SS G_CDS: 2.03 Total: 42.50 kcal Total: -90.24 2.96 -87.28 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060207.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.253 kcal (2) G-P(sol) polarization free energy of solvation -90.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds