Wall clock time and date at job start Sun Mar 29 2020 21:56:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30636 * 1 3 3 Si 1.86795 * 120.00339 * 2 1 4 4 H 1.48510 * 109.47165 * 274.99028 * 3 2 1 5 5 H 1.48504 * 109.47108 * 34.98446 * 3 2 1 6 6 H 1.48498 * 109.47234 * 154.98891 * 3 2 1 7 7 C 1.40133 * 119.99669 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00144 * 186.24820 * 7 2 1 9 9 C 1.41805 * 120.00144 * 6.25101 * 7 2 1 10 10 O 1.21780 * 119.99923 * 353.76161 * 9 7 2 11 11 N 1.34775 * 120.00106 * 173.76721 * 9 7 2 12 12 C 1.40159 * 120.00094 * 179.97438 * 11 9 7 13 13 C 1.40417 * 126.14495 * 0.02562 * 12 11 9 14 14 N 1.30793 * 108.20650 * 179.71710 * 13 12 11 15 15 N 1.40045 * 108.42511 * 0.43863 * 14 13 12 16 16 C 1.46502 * 125.96929 * 179.81820 * 15 14 13 17 17 C 1.50701 * 109.47175 * 304.69321 * 16 15 14 18 18 O 1.20827 * 119.99938 * 359.97438 * 17 16 15 19 19 O 1.34232 * 120.00344 * 180.02562 * 17 16 15 20 20 C 1.35175 * 108.05470 * 359.55405 * 15 14 13 21 21 H 0.97002 * 119.99380 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00056 * 0.02562 * 11 9 7 23 23 H 1.07995 * 125.89856 * 359.97438 * 13 12 11 24 24 H 1.08999 * 109.47272 * 184.68878 * 16 15 14 25 25 H 1.09000 * 109.47465 * 64.69024 * 16 15 14 26 26 H 0.96695 * 117.00518 * 179.97438 * 19 17 16 27 27 H 1.08003 * 126.19741 * 180.22685 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2404 1.6176 0.0000 4 1 2.3825 2.1072 -1.3949 5 1 1.4946 2.6199 0.8028 6 1 3.5867 1.4119 0.5919 7 6 2.0070 -1.2136 -0.0005 8 1 3.0822 -1.2165 0.1013 9 6 1.3042 -2.4380 -0.1348 10 8 0.0864 -2.4441 -0.1354 11 7 1.9840 -3.5948 -0.2617 12 6 1.2894 -4.8050 -0.3938 13 6 -0.1059 -4.9615 -0.4109 14 7 -0.3727 -6.2336 -0.5560 15 7 0.8378 -6.9345 -0.6265 16 6 0.9851 -8.3835 -0.7848 17 6 0.2248 -9.0882 0.3090 18 8 -0.3779 -8.4461 1.1362 19 8 0.2180 -10.4294 0.3649 20 6 1.8463 -6.0397 -0.5288 21 1 -0.4849 0.8401 0.0004 22 1 2.9540 -3.5899 -0.2608 23 1 -0.8332 -4.1679 -0.3239 24 1 2.0402 -8.6502 -0.7239 25 1 0.5896 -8.6851 -1.7547 26 1 -0.2833 -10.8363 1.0847 27 1 2.9025 -6.2640 -0.5527 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605581752.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:08 Heat of formation + Delta-G solvation = -69.318492 kcal Electronic energy + Delta-G solvation = -16230.147571 eV Core-core repulsion = 13182.139816 eV Total energy + Delta-G solvation = -3048.007755 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.21138 -41.04040 -39.34763 -37.14367 -35.41019 -34.44183 -33.85881 -30.53877 -29.22173 -27.58250 -23.60484 -23.07144 -21.75967 -21.02133 -19.20394 -19.01945 -18.17081 -17.55591 -17.41933 -17.08777 -16.11738 -15.93716 -15.65380 -14.84072 -14.66464 -14.47830 -13.93740 -13.63909 -13.49196 -13.11524 -12.80677 -12.59702 -12.58006 -11.97709 -11.89975 -11.57568 -11.29390 -10.85965 -10.27266 -9.76650 -8.34938 -8.32919 -6.90694 0.84335 1.14839 1.41673 1.42966 1.46635 1.60604 1.92294 2.14954 2.25853 2.56795 3.15635 3.75788 3.84216 4.03901 4.21634 4.27523 4.36741 4.78842 4.82886 5.28494 5.53901 5.57952 5.95330 6.08797 6.25666 6.50391 6.76923 6.81188 6.94773 7.57358 8.48057 8.66445 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.078564 B = 0.004704 C = 0.004560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.313083 B = 5950.723676 C = 6138.808573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.030 3.970 3 Si 1.002 2.998 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.245 1.245 7 C -0.566 4.566 8 H 0.093 0.907 9 C 0.533 3.467 10 O -0.619 6.619 11 N -0.669 5.669 12 C 0.012 3.988 13 C 0.018 3.982 14 N -0.303 5.303 15 N -0.373 5.373 16 C 0.149 3.851 17 C 0.466 3.534 18 O -0.544 6.544 19 O -0.502 6.502 20 C 0.008 3.992 21 H 0.277 0.723 22 H 0.408 0.592 23 H 0.167 0.833 24 H 0.190 0.810 25 H 0.151 0.849 26 H 0.430 0.570 27 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.041 -16.230 -2.481 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.188 4.188 3 Si 0.821 3.179 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.168 1.168 7 C -0.601 4.601 8 H 0.111 0.889 9 C 0.341 3.659 10 O -0.507 6.507 11 N -0.315 5.315 12 C -0.094 4.094 13 C -0.169 4.169 14 N -0.126 5.126 15 N -0.161 5.161 16 C 0.028 3.972 17 C 0.307 3.693 18 O -0.433 6.433 19 O -0.316 6.316 20 C -0.138 4.138 21 H 0.087 0.913 22 H 0.243 0.757 23 H 0.184 0.816 24 H 0.207 0.793 25 H 0.169 0.831 26 H 0.292 0.708 27 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 7.193 -16.752 -2.663 18.425 hybrid contribution 0.386 1.233 0.779 1.509 sum 7.579 -15.519 -1.885 17.374 Atomic orbital electron populations 1.70191 1.09769 1.29296 1.34117 1.27043 0.95455 1.05225 0.91030 0.84941 0.78983 0.74752 0.79211 1.18704 1.19914 1.16833 1.20538 0.96018 0.90622 1.52926 0.88897 1.17408 0.87122 0.83716 0.77655 1.90490 1.15827 1.86553 1.57796 1.42940 1.09188 1.03253 1.76112 1.18331 0.91729 0.88247 1.11051 1.24293 0.96896 0.93548 1.02195 1.77221 1.06335 1.04941 1.24117 1.47738 1.03347 1.06200 1.58857 1.21397 1.05459 0.72957 0.97400 1.23908 0.78615 0.81366 0.85384 1.90856 1.42751 1.68105 1.41584 1.84429 1.70708 1.20263 1.56168 1.22274 0.96040 0.86466 1.09069 0.91280 0.75667 0.81590 0.79280 0.83115 0.70819 0.75480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -48.68 11.76 21.85 0.26 -48.42 15 2 C 0.03 1.65 5.49 85.33 0.47 2.11 15 3 Si 1.00 39.81 29.56 68.60 2.03 41.84 15 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 5 H -0.27 -10.60 7.11 99.48 0.71 -9.90 15 6 H -0.25 -8.93 7.11 99.48 0.71 -8.23 15 7 C -0.57 -31.30 9.31 23.61 0.22 -31.08 15 8 H 0.09 4.51 7.86 -2.91 -0.02 4.49 15 9 C 0.53 30.92 7.53 85.12 0.64 31.56 15 10 O -0.62 -41.25 12.05 -4.60 -0.06 -41.31 15 11 N -0.67 -30.73 5.44 -311.98 -1.70 -32.42 15 12 C 0.01 0.54 6.90 37.85 0.26 0.80 15 13 C 0.02 0.88 10.84 85.38 0.93 1.81 15 14 N -0.30 -13.13 11.64 -56.69 -0.66 -13.79 15 15 N -0.37 -11.49 3.40 -350.93 -1.19 -12.68 15 16 C 0.15 2.50 7.10 85.63 0.61 3.11 15 17 C 0.47 10.15 8.36 71.24 0.60 10.75 15 18 O -0.54 -18.89 16.48 21.96 0.36 -18.53 15 19 O -0.50 -6.54 13.42 -51.44 -0.69 -7.23 15 20 C 0.01 0.24 11.50 83.69 0.96 1.20 15 21 H 0.28 15.12 8.29 -92.71 -0.77 14.35 15 22 H 0.41 15.09 8.78 -92.71 -0.81 14.28 15 23 H 0.17 9.67 5.91 -2.91 -0.02 9.66 15 24 H 0.19 1.05 8.07 -2.39 -0.02 1.03 15 25 H 0.15 1.75 8.14 -2.39 -0.02 1.73 15 26 H 0.43 2.75 9.10 -74.06 -0.67 2.07 15 27 H 0.23 3.96 8.06 -2.91 -0.02 3.93 15 Total: -1.00 -90.94 256.31 2.79 -88.15 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: -0.24 Total: 24.14 kcal Atomic # 6 Polarization: 15.58 SS G_CDS: 4.68 Total: 20.26 kcal Atomic # 7 Polarization: -104.03 SS G_CDS: -3.29 Total: -107.32 kcal Atomic # 8 Polarization: -66.69 SS G_CDS: -0.38 Total: -67.07 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -90.94 2.79 -88.15 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605581752.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.828 kcal (2) G-P(sol) polarization free energy of solvation -90.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds