Wall clock time and date at job start Sun Mar 29 2020 21:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46646 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99535 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 C 1.50693 * 109.47154 * 179.72352 * 12 10 9 14 14 C 1.38264 * 119.93465 * 269.72222 * 13 12 10 15 15 C 1.38185 * 120.09369 * 179.76339 * 14 13 12 16 16 C 1.38655 * 119.96831 * 0.51192 * 15 14 13 17 17 O 1.35961 * 120.06527 * 179.72289 * 16 15 14 18 18 C 1.38908 * 119.87626 * 359.74171 * 16 15 14 19 19 F 1.35102 * 120.04855 * 179.97438 * 18 16 15 20 20 C 1.38254 * 119.94027 * 89.99555 * 13 12 10 21 21 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 24 24 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 25 25 H 1.07999 * 119.95563 * 0.02562 * 14 13 12 26 26 H 1.07997 * 120.01633 * 180.25144 * 15 14 13 27 27 H 0.96703 * 113.99576 * 270.02356 * 17 16 15 28 28 H 1.08005 * 119.98352 * 359.96040 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 6 2.2231 -6.0083 -0.0090 14 6 2.6680 -6.5313 -1.2091 15 6 3.5697 -7.5784 -1.2168 16 6 4.0211 -8.1126 -0.0196 17 8 4.9039 -9.1465 -0.0249 18 6 3.5693 -7.5897 1.1854 19 9 4.0064 -8.1078 2.3540 20 6 2.6707 -6.5380 1.1871 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 0.6165 -4.9246 0.8846 24 1 0.6178 -4.9168 -0.8953 25 1 2.3135 -6.1181 -2.1418 26 1 3.9194 -7.9832 -2.1550 27 1 4.4875 -10.0192 -0.0295 28 1 2.3188 -6.1302 2.1233 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001611113592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:28 Heat of formation + Delta-G solvation = -107.584497 kcal Electronic energy + Delta-G solvation = -16079.355778 eV Core-core repulsion = 13009.768723 eV Total energy + Delta-G solvation = -3069.587055 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.73967 -39.61111 -38.20319 -36.70245 -33.98851 -31.75438 -31.11739 -30.47698 -27.09826 -24.60477 -22.85366 -21.79712 -19.30640 -18.56785 -17.95678 -16.72009 -16.55822 -16.06592 -15.76332 -15.02856 -14.55776 -14.32264 -14.02716 -13.83133 -13.57545 -13.19005 -12.66389 -12.30039 -11.71895 -11.57973 -11.38239 -11.33811 -11.01114 -10.55236 -10.46324 -10.24437 -9.54612 -8.81360 -8.57929 -8.24172 -8.01772 -6.45739 -3.86921 1.18100 1.30270 3.17843 3.24009 3.28498 3.56267 3.84338 4.00594 4.16528 4.40788 4.79308 4.90717 5.12773 5.21117 5.34334 5.40169 5.74512 5.77148 5.95850 6.06459 6.15517 6.24075 6.36977 6.68421 6.84494 7.51599 7.56101 8.00645 8.55372 9.13084 9.48569 9.99648 10.71628 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.048351 B = 0.004853 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.963362 B = 5768.688417 C = 5822.681080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.024 3.976 3 Si 0.931 3.069 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.302 4.302 8 H 0.103 0.897 9 N -0.560 5.560 10 C 0.441 3.559 11 O -0.588 6.588 12 C -0.100 4.100 13 C -0.018 4.018 14 C -0.101 4.101 15 C -0.116 4.116 16 C 0.058 3.942 17 O -0.490 6.490 18 C 0.073 3.927 19 F -0.138 7.138 20 C -0.127 4.127 21 H 0.273 0.727 22 H 0.393 0.607 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.133 0.867 26 H 0.136 0.864 27 H 0.385 0.615 28 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 -14.340 -1.160 14.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.178 4.178 3 Si 0.758 3.242 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.199 1.199 7 C -0.432 4.432 8 H 0.121 0.879 9 N -0.196 5.196 10 C 0.226 3.774 11 O -0.473 6.473 12 C -0.141 4.141 13 C -0.019 4.019 14 C -0.120 4.120 15 C -0.134 4.134 16 C 0.013 3.987 17 O -0.299 6.299 18 C 0.054 3.946 19 F -0.117 7.117 20 C -0.146 4.146 21 H 0.083 0.917 22 H 0.227 0.773 23 H 0.110 0.890 24 H 0.112 0.888 25 H 0.150 0.850 26 H 0.153 0.847 27 H 0.240 0.760 28 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.933 -13.730 -1.109 13.807 hybrid contribution -0.421 0.446 0.250 0.662 sum 0.512 -13.284 -0.858 13.322 Atomic orbital electron populations 1.69599 1.05937 1.28375 1.50260 1.25266 0.95639 0.99752 0.97141 0.85917 0.78790 0.80385 0.79145 1.19852 1.20922 1.19851 1.19678 0.93398 0.82231 1.47859 0.87935 1.41869 1.09240 1.04536 1.63935 1.19683 0.88251 0.84500 0.84939 1.90564 1.13769 1.87164 1.55772 1.20637 0.97061 0.92058 1.04307 1.19302 0.96255 0.94245 0.92101 1.20975 0.97081 0.95702 0.98208 1.21208 0.97131 0.98010 0.97056 1.18351 0.95216 0.93903 0.91251 1.84902 1.32677 1.15953 1.96348 1.18014 0.98391 0.97378 0.80849 1.91466 1.88308 1.85927 1.45962 1.20936 0.98124 0.95782 0.99795 0.91740 0.77319 0.89016 0.88831 0.84952 0.84658 0.75982 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.14 13.05 55.50 0.72 -23.41 15 2 C 0.02 0.63 5.50 -17.47 -0.10 0.54 15 3 Si 0.93 20.91 29.55 -169.99 -5.02 15.88 15 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 5 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 15 7 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 15 8 H 0.10 2.98 7.16 -52.49 -0.38 2.60 15 9 N -0.56 -13.87 5.29 -10.96 -0.06 -13.93 15 10 C 0.44 10.11 7.78 -10.98 -0.09 10.03 15 11 O -0.59 -15.86 15.61 5.55 0.09 -15.78 15 12 C -0.10 -1.65 5.83 -29.04 -0.17 -1.82 15 13 C -0.02 -0.30 4.37 -104.61 -0.46 -0.75 15 14 C -0.10 -1.47 9.69 -39.59 -0.38 -1.86 15 15 C -0.12 -1.54 9.99 -39.45 -0.39 -1.94 15 16 C 0.06 0.84 6.71 -39.18 -0.26 0.57 15 17 O -0.49 -6.17 13.37 -19.62 -0.26 -6.43 15 18 C 0.07 1.15 7.31 -39.30 -0.29 0.87 15 19 F -0.14 -2.20 17.11 2.25 0.04 -2.16 15 20 C -0.13 -2.04 9.67 -39.54 -0.38 -2.42 15 21 H 0.27 6.93 8.31 -40.82 -0.34 6.60 15 22 H 0.39 9.20 7.90 -40.82 -0.32 8.88 15 23 H 0.09 1.31 8.08 -51.93 -0.42 0.89 15 24 H 0.09 1.30 8.08 -51.93 -0.42 0.88 15 25 H 0.13 1.69 8.06 -52.49 -0.42 1.27 15 26 H 0.14 1.44 8.06 -52.49 -0.42 1.02 15 27 H 0.39 2.73 9.06 45.56 0.41 3.14 15 28 H 0.14 2.04 8.06 -52.48 -0.42 1.62 15 LS Contribution 264.60 15.07 3.99 3.99 Total: -1.00 -32.74 264.60 -4.70 -37.43 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -1.53 Total: 9.67 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -2.66 Total: -5.26 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: 0.67 Total: -37.34 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.18 Total: -22.21 kcal Atomic # 9 Polarization: -2.20 SS G_CDS: 0.04 Total: -2.16 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -32.74 -4.70 -37.43 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.150 kcal (2) G-P(sol) polarization free energy of solvation -32.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds