Wall clock time and date at job start Sun Mar 29 2020 21:59:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46646 * 239.99773 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47259 * 119.99535 * 3 2 1 7 7 C 1.38942 * 120.00005 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00163 * 180.02562 * 7 2 1 9 9 N 1.37101 * 120.00412 * 0.02562 * 7 2 1 10 10 C 1.34777 * 120.00327 * 180.02562 * 9 7 2 11 11 O 1.21293 * 119.99756 * 359.97438 * 10 9 7 12 12 C 1.50702 * 119.99928 * 180.27606 * 10 9 7 13 13 C 1.50693 * 109.47154 * 179.72352 * 12 10 9 14 14 C 1.38264 * 119.93465 * 269.72222 * 13 12 10 15 15 C 1.38185 * 120.09369 * 179.76339 * 14 13 12 16 16 C 1.38655 * 119.96831 * 0.51192 * 15 14 13 17 17 O 1.35961 * 120.06527 * 179.72289 * 16 15 14 18 18 C 1.38908 * 119.87626 * 359.74171 * 16 15 14 19 19 F 1.35102 * 120.04855 * 179.97438 * 18 16 15 20 20 C 1.38254 * 119.94027 * 89.99555 * 13 12 10 21 21 H 0.96996 * 120.00330 * 0.02562 * 1 2 3 22 22 H 0.97000 * 119.99355 * 359.97438 * 9 7 2 23 23 H 1.09004 * 109.46965 * 299.72211 * 12 10 9 24 24 H 1.09000 * 109.47154 * 59.71645 * 12 10 9 25 25 H 1.07999 * 119.95563 * 0.02562 * 14 13 12 26 26 H 1.07997 * 120.01633 * 180.25144 * 15 14 13 27 27 H 0.96703 * 113.99576 * 270.02356 * 17 16 15 28 28 H 1.08005 * 119.98352 * 359.96040 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6963 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6965 1.2126 7 6 2.0089 -1.2033 0.0005 8 1 3.0889 -1.2033 0.0010 9 7 1.3234 -2.3907 0.0005 10 6 1.9973 -3.5578 0.0016 11 8 3.2103 -3.5578 0.0021 12 6 1.2438 -4.8630 -0.0047 13 6 2.2231 -6.0083 -0.0090 14 6 2.6680 -6.5313 -1.2091 15 6 3.5697 -7.5784 -1.2168 16 6 4.0211 -8.1126 -0.0196 17 8 4.9039 -9.1465 -0.0249 18 6 3.5693 -7.5897 1.1854 19 9 4.0064 -8.1078 2.3540 20 6 2.6707 -6.5380 1.1871 21 1 -0.4850 0.8400 -0.0004 22 1 0.3534 -2.3906 0.0005 23 1 0.6165 -4.9246 0.8846 24 1 0.6178 -4.9168 -0.8953 25 1 2.3135 -6.1181 -2.1418 26 1 3.9194 -7.9832 -2.1550 27 1 4.4875 -10.0192 -0.0295 28 1 2.3188 -6.1302 2.1233 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001611113592.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:28 Heat of formation + Delta-G solvation = -131.640365 kcal Electronic energy + Delta-G solvation = -16080.398919 eV Core-core repulsion = 13009.768723 eV Total energy + Delta-G solvation = -3070.630196 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -49.93719 -40.85735 -39.82197 -37.87361 -35.95804 -33.40913 -32.72963 -31.61900 -28.52088 -26.43150 -23.98132 -23.06251 -21.04343 -19.92652 -19.59874 -17.93846 -17.75717 -17.72486 -17.00299 -16.49440 -16.18608 -15.83745 -15.68232 -14.98795 -14.89771 -14.50554 -14.37144 -13.53875 -13.51160 -12.97795 -12.80497 -12.64799 -12.52199 -12.42032 -12.11529 -11.60008 -11.51016 -10.43604 -10.02056 -9.90415 -9.48495 -8.46917 -5.95704 0.04373 0.17330 1.39351 1.41892 1.52316 2.05227 2.27874 2.44883 2.96503 3.20386 3.32269 3.37510 3.68042 3.83129 4.23944 4.25268 4.46408 4.55713 4.65609 4.87145 4.98509 5.05203 5.17701 5.41239 5.52097 5.77015 5.99939 6.58919 6.73442 7.12054 7.55829 8.11495 8.69882 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.048351 B = 0.004853 C = 0.004808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 578.963362 B = 5768.688417 C = 5822.681080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.010 4.010 3 Si 0.990 3.010 4 H -0.272 1.272 5 H -0.270 1.270 6 H -0.274 1.274 7 C -0.336 4.336 8 H 0.077 0.923 9 N -0.570 5.570 10 C 0.440 3.560 11 O -0.631 6.631 12 C -0.087 4.087 13 C -0.042 4.042 14 C -0.103 4.103 15 C -0.112 4.112 16 C 0.065 3.935 17 O -0.498 6.498 18 C 0.050 3.950 19 F -0.145 7.145 20 C -0.138 4.138 21 H 0.278 0.722 22 H 0.399 0.601 23 H 0.115 0.885 24 H 0.125 0.875 25 H 0.150 0.850 26 H 0.166 0.834 27 H 0.411 0.589 28 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.469 -14.955 -1.988 15.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.210 4.210 3 Si 0.813 3.187 4 H -0.197 1.197 5 H -0.194 1.194 6 H -0.199 1.199 7 C -0.466 4.466 8 H 0.095 0.905 9 N -0.207 5.207 10 C 0.229 3.771 11 O -0.519 6.519 12 C -0.126 4.126 13 C -0.042 4.042 14 C -0.121 4.121 15 C -0.130 4.130 16 C 0.020 3.980 17 O -0.311 6.311 18 C 0.031 3.969 19 F -0.124 7.124 20 C -0.157 4.157 21 H 0.088 0.912 22 H 0.233 0.767 23 H 0.133 0.867 24 H 0.143 0.857 25 H 0.168 0.832 26 H 0.184 0.816 27 H 0.270 0.730 28 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 0.610 -14.380 -1.936 14.522 hybrid contribution -0.282 0.511 0.499 0.768 sum 0.328 -13.869 -1.437 13.947 Atomic orbital electron populations 1.69652 1.06720 1.29399 1.50097 1.25991 0.96523 1.02278 0.96229 0.85039 0.77833 0.76883 0.78908 1.19689 1.19397 1.19916 1.19626 0.92689 0.84144 1.50116 0.90468 1.41934 1.09433 1.04580 1.64747 1.20791 0.88068 0.86001 0.82287 1.90531 1.16110 1.88150 1.57090 1.20571 0.96918 0.88142 1.06996 1.19374 0.97283 0.94777 0.92808 1.21278 0.96839 0.95647 0.98344 1.21515 0.96315 0.97303 0.97904 1.18485 0.94398 0.94117 0.91044 1.84832 1.32913 1.17117 1.96233 1.18240 0.99311 0.98085 0.81293 1.91441 1.88464 1.86038 1.46412 1.21051 0.98458 0.96132 1.00087 0.91235 0.76688 0.86665 0.85684 0.83194 0.81615 0.73008 0.84429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.71 13.05 21.66 0.28 -48.43 15 2 C -0.01 -0.53 5.50 84.92 0.47 -0.07 15 3 Si 0.99 42.60 29.55 68.60 2.03 44.63 15 4 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 5 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.34 -18.87 9.68 84.04 0.81 -18.06 15 8 H 0.08 4.64 7.16 -2.91 -0.02 4.62 15 9 N -0.57 -28.43 5.29 -306.98 -1.62 -30.05 15 10 C 0.44 20.19 7.78 87.66 0.68 20.87 15 11 O -0.63 -34.57 15.61 -3.07 -0.05 -34.62 15 12 C -0.09 -2.71 5.83 29.10 0.17 -2.54 15 13 C -0.04 -1.29 4.37 -19.86 -0.09 -1.38 15 14 C -0.10 -2.76 9.69 22.26 0.22 -2.55 15 15 C -0.11 -2.70 9.99 22.36 0.22 -2.48 15 16 C 0.07 1.75 6.71 22.53 0.15 1.90 15 17 O -0.50 -11.39 13.37 -93.11 -1.24 -12.63 15 18 C 0.05 1.55 7.31 22.45 0.16 1.71 15 19 F -0.14 -4.58 17.11 44.97 0.77 -3.81 15 20 C -0.14 -4.35 9.67 22.30 0.22 -4.14 15 21 H 0.28 13.86 8.31 -92.71 -0.77 13.09 15 22 H 0.40 18.62 7.90 -92.71 -0.73 17.89 15 23 H 0.12 3.06 8.08 -2.38 -0.02 3.04 15 24 H 0.13 3.12 8.08 -2.39 -0.02 3.10 15 25 H 0.15 3.41 8.06 -2.91 -0.02 3.39 15 26 H 0.17 2.91 8.06 -2.91 -0.02 2.89 15 27 H 0.41 4.71 9.06 -74.06 -0.67 4.04 15 28 H 0.14 4.12 8.06 -2.91 -0.02 4.10 15 Total: -1.00 -70.54 264.60 3.00 -67.55 By element: Atomic # 1 Polarization: 24.27 SS G_CDS: -0.18 Total: 24.08 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: 3.01 Total: -6.72 kcal Atomic # 7 Polarization: -77.14 SS G_CDS: -1.34 Total: -78.48 kcal Atomic # 8 Polarization: -45.96 SS G_CDS: -1.29 Total: -47.25 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.77 Total: -3.81 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -70.54 3.00 -67.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001611113592.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.092 kcal (2) G-P(sol) polarization free energy of solvation -70.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds