Wall clock time and date at job start Sun Mar 29 2020 22:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86803 * 119.99968 * 2 1 4 4 H 1.48498 * 109.47387 * 240.00286 * 3 2 1 5 5 H 1.48504 * 109.47023 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.47133 * 119.99928 * 3 2 1 7 7 C 1.40051 * 120.00015 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99687 * 179.97438 * 7 2 1 9 9 C 1.46374 * 120.00192 * 359.97438 * 7 2 1 10 10 O 1.21686 * 119.99872 * 0.02562 * 9 7 2 11 11 N 1.34774 * 119.99747 * 179.97438 * 9 7 2 12 12 C 1.46499 * 119.99541 * 179.97438 * 11 9 7 13 13 C 1.50702 * 109.47186 * 180.02562 * 12 11 9 14 14 C 1.38713 * 120.03923 * 269.72697 * 13 12 11 15 15 O 1.35901 * 120.04463 * 0.25168 * 14 13 12 16 16 C 1.38728 * 119.91377 * 180.27283 * 14 13 12 17 17 C 1.38180 * 119.99364 * 359.97438 * 16 14 13 18 18 C 1.38209 * 120.08170 * 0.02562 * 17 16 14 19 19 C 1.38345 * 120.04089 * 90.00029 * 13 12 11 20 20 F 1.35099 * 119.99613 * 359.75075 * 19 13 12 21 21 H 0.96999 * 120.00295 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00622 * 0.02562 * 11 9 7 23 23 H 1.09002 * 109.47169 * 60.00714 * 12 11 9 24 24 H 1.08996 * 109.47427 * 300.00268 * 12 11 9 25 25 H 0.96701 * 113.99797 * 89.99421 * 15 14 13 26 26 H 1.08000 * 120.00558 * 180.02562 * 16 14 13 27 27 H 1.07998 * 119.95624 * 179.97438 * 17 16 14 28 28 H 1.08001 * 119.95480 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2125 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6964 1.2125 7 6 2.0070 -1.2129 -0.0005 8 1 3.0870 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4806 -0.0005 11 7 1.9491 -3.6477 -0.0016 12 6 1.2166 -4.9164 -0.0010 13 6 2.1959 -6.0618 -0.0018 14 6 2.6419 -6.5934 -1.2029 15 8 2.2002 -6.0785 -2.3805 16 6 3.5390 -7.6515 -1.2006 17 6 3.9875 -8.1742 -0.0026 18 6 3.5431 -7.6444 1.1940 19 6 2.6469 -6.5883 1.1955 20 9 2.2132 -6.0721 2.3662 21 1 -0.4850 0.8400 0.0004 22 1 2.9191 -3.6477 -0.0020 23 1 0.5890 -4.9740 -0.8904 24 1 0.5910 -4.9743 0.8896 25 1 2.7460 -5.3579 -2.7240 26 1 3.8875 -8.0662 -2.1349 27 1 4.6856 -8.9982 -0.0015 28 1 3.8946 -8.0548 2.1291 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001638864067.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:01 Heat of formation + Delta-G solvation = -133.540866 kcal Electronic energy + Delta-G solvation = -16422.184005 eV Core-core repulsion = 13351.471397 eV Total energy + Delta-G solvation = -3070.712608 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 239.074 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -49.99220 -40.89022 -39.26740 -37.52286 -35.56558 -34.53008 -32.07123 -30.70277 -28.80132 -26.59371 -23.68296 -22.83670 -21.77075 -19.68753 -19.34875 -18.05918 -17.60231 -17.36991 -16.91917 -16.64286 -16.02778 -15.85742 -15.56515 -15.23813 -14.73526 -14.45859 -14.04259 -13.52952 -13.20386 -13.01868 -12.88519 -12.70775 -12.66417 -12.37464 -12.06729 -11.64444 -10.93881 -10.19044 -9.71202 -9.65858 -9.59163 -8.31096 -6.89485 0.02002 0.07807 1.39491 1.43471 1.55561 2.23139 2.40804 2.44012 2.99774 3.17210 3.46323 3.55971 3.58073 3.83842 4.01592 4.32714 4.55323 4.62017 4.76414 4.95200 5.14347 5.27994 5.28900 5.30930 5.77031 5.81817 6.09558 6.20792 6.70934 6.83208 7.47415 8.44058 8.64090 Molecular weight = 239.07amu Principal moments of inertia in cm(-1) A = 0.035745 B = 0.005935 C = 0.005728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.139272 B = 4716.524353 C = 4886.902886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.026 3.974 3 Si 1.003 2.997 4 H -0.251 1.251 5 H -0.274 1.274 6 H -0.255 1.255 7 C -0.571 4.571 8 H 0.090 0.910 9 C 0.536 3.464 10 O -0.633 6.633 11 N -0.745 5.745 12 C 0.184 3.816 13 C -0.181 4.181 14 C 0.142 3.858 15 O -0.505 6.505 16 C -0.149 4.149 17 C -0.055 4.055 18 C -0.159 4.159 19 C 0.103 3.897 20 F -0.151 7.151 21 H 0.275 0.725 22 H 0.393 0.607 23 H 0.048 0.952 24 H 0.029 0.971 25 H 0.410 0.590 26 H 0.166 0.834 27 H 0.184 0.816 28 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.378 -14.308 -1.646 19.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.189 4.189 3 Si 0.821 3.179 4 H -0.174 1.174 5 H -0.199 1.199 6 H -0.179 1.179 7 C -0.607 4.607 8 H 0.108 0.892 9 C 0.341 3.659 10 O -0.521 6.521 11 N -0.400 5.400 12 C 0.059 3.941 13 C -0.183 4.183 14 C 0.096 3.904 15 O -0.318 6.318 16 C -0.167 4.167 17 C -0.073 4.073 18 C -0.178 4.178 19 C 0.083 3.917 20 F -0.129 7.129 21 H 0.085 0.915 22 H 0.226 0.774 23 H 0.067 0.933 24 H 0.047 0.953 25 H 0.269 0.731 26 H 0.183 0.817 27 H 0.201 0.799 28 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 11.849 -14.625 -1.554 18.887 hybrid contribution 0.201 1.340 0.301 1.388 sum 12.050 -13.286 -1.253 17.980 Atomic orbital electron populations 1.70194 1.09678 1.29144 1.36179 1.27055 0.95562 1.05142 0.91116 0.85005 0.78126 0.74340 0.80385 1.17441 1.19923 1.17895 1.21375 0.94755 0.89748 1.54856 0.89209 1.18712 0.86869 0.84213 0.76088 1.90556 1.16354 1.87832 1.57324 1.45809 1.08946 1.03893 1.81337 1.19382 0.92754 0.82228 0.99695 1.20329 1.03639 1.00508 0.93798 1.18279 0.93833 0.94513 0.83739 1.84727 1.56511 1.55740 1.34831 1.21802 0.96851 0.96805 1.01221 1.21391 0.97686 0.98809 0.89427 1.21501 0.98221 0.95857 1.02213 1.17830 0.97959 0.96057 0.79838 1.91482 1.88601 1.86525 1.46334 0.91472 0.77362 0.93330 0.95293 0.73059 0.81684 0.79925 0.81896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.58 11.83 21.84 0.26 -51.33 15 2 C 0.03 1.49 5.50 85.31 0.47 1.96 15 3 Si 1.00 41.30 29.56 68.60 2.03 43.33 15 4 H -0.25 -9.56 7.11 99.48 0.71 -8.85 15 5 H -0.27 -10.92 7.11 99.48 0.71 -10.22 15 6 H -0.25 -9.89 7.11 99.48 0.71 -9.19 15 7 C -0.57 -33.05 9.54 24.83 0.24 -32.81 15 8 H 0.09 4.60 7.85 -2.91 -0.02 4.58 15 9 C 0.54 32.52 7.75 86.36 0.67 33.19 15 10 O -0.63 -44.56 15.02 -4.30 -0.06 -44.63 15 11 N -0.75 -35.74 5.54 -471.15 -2.61 -38.35 15 12 C 0.18 8.14 5.40 85.63 0.46 8.60 15 13 C -0.18 -5.99 5.27 -19.72 -0.10 -6.10 15 14 C 0.14 3.79 6.68 22.50 0.15 3.94 15 15 O -0.50 -13.93 12.55 -92.43 -1.16 -15.09 15 16 C -0.15 -2.65 9.99 22.37 0.22 -2.43 15 17 C -0.06 -0.80 10.04 22.25 0.22 -0.57 15 18 C -0.16 -3.16 10.02 22.33 0.22 -2.93 15 19 C 0.10 3.09 7.24 22.36 0.16 3.25 15 20 F -0.15 -5.36 16.48 44.97 0.74 -4.62 15 21 H 0.28 15.62 8.29 -92.71 -0.77 14.85 15 22 H 0.39 16.29 8.44 -92.71 -0.78 15.51 15 23 H 0.05 2.32 7.53 -2.39 -0.02 2.30 15 24 H 0.03 1.43 7.64 -2.39 -0.02 1.41 15 25 H 0.41 8.51 9.06 -74.06 -0.67 7.84 15 26 H 0.17 1.97 8.06 -2.91 -0.02 1.94 15 27 H 0.18 1.01 8.06 -2.91 -0.02 0.98 15 28 H 0.16 2.33 8.06 -2.91 -0.02 2.31 15 Total: -1.00 -82.81 262.70 1.68 -81.14 By element: Atomic # 1 Polarization: 23.69 SS G_CDS: -0.23 Total: 23.46 kcal Atomic # 6 Polarization: 3.38 SS G_CDS: 2.72 Total: 6.10 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -2.35 Total: -89.68 kcal Atomic # 8 Polarization: -58.49 SS G_CDS: -1.22 Total: -59.72 kcal Atomic # 9 Polarization: -5.36 SS G_CDS: 0.74 Total: -4.62 kcal Atomic # 14 Polarization: 41.30 SS G_CDS: 2.03 Total: 43.33 kcal Total: -82.81 1.68 -81.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001638864067.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.403 kcal (2) G-P(sol) polarization free energy of solvation -82.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds